react-msaview 5.0.1 → 5.0.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (226) hide show
  1. package/bundle/index.js +79 -79
  2. package/bundle/index.js.LICENSE.txt +0 -15
  3. package/bundle/index.js.map +1 -1
  4. package/dist/colorSchemes.js +1 -1
  5. package/dist/colorSchemes.js.map +1 -1
  6. package/dist/components/ConservationTrack.d.ts +2 -2
  7. package/dist/components/Loading.d.ts +1 -1
  8. package/dist/components/Loading.js +2 -2
  9. package/dist/components/Loading.js.map +1 -1
  10. package/dist/components/MSAView.d.ts +1 -1
  11. package/dist/components/MSAView.js +8 -8
  12. package/dist/components/MSAView.js.map +1 -1
  13. package/dist/components/ResizeHandles.d.ts +1 -1
  14. package/dist/components/SequenceTextArea.js +2 -2
  15. package/dist/components/SequenceTextArea.js.map +1 -1
  16. package/dist/components/TextTrack.d.ts +2 -2
  17. package/dist/components/TextTrack.js +1 -1
  18. package/dist/components/TextTrack.js.map +1 -1
  19. package/dist/components/Track.d.ts +1 -1
  20. package/dist/components/Track.js +1 -1
  21. package/dist/components/Track.js.map +1 -1
  22. package/dist/components/VerticalScrollbar.d.ts +1 -1
  23. package/dist/components/dialogs/AboutDialog.js +1 -1
  24. package/dist/components/dialogs/AboutDialog.js.map +1 -1
  25. package/dist/components/dialogs/AddTrackDialog.d.ts +1 -1
  26. package/dist/components/dialogs/DomainDialog.d.ts +1 -1
  27. package/dist/components/dialogs/DomainDialog.js +3 -3
  28. package/dist/components/dialogs/DomainDialog.js.map +1 -1
  29. package/dist/components/dialogs/ExportSVGDialog.d.ts +1 -1
  30. package/dist/components/dialogs/ExportSVGDialog.js +1 -1
  31. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  32. package/dist/components/dialogs/FeatureDialog.d.ts +1 -1
  33. package/dist/components/dialogs/FeatureDialog.js +1 -1
  34. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  35. package/dist/components/dialogs/InterProScanDialog.d.ts +1 -1
  36. package/dist/components/dialogs/InterProScanDialog.js +1 -1
  37. package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
  38. package/dist/components/dialogs/MetadataDialog.d.ts +1 -1
  39. package/dist/components/dialogs/MetadataDialog.js +1 -1
  40. package/dist/components/dialogs/MetadataDialog.js.map +1 -1
  41. package/dist/components/dialogs/SettingsDialog.d.ts +1 -1
  42. package/dist/components/dialogs/SettingsDialog.js +2 -2
  43. package/dist/components/dialogs/SettingsDialog.js.map +1 -1
  44. package/dist/components/dialogs/TrackInfoDialog.js +1 -1
  45. package/dist/components/dialogs/TrackInfoDialog.js.map +1 -1
  46. package/dist/components/dialogs/UserProvidedDomainsDialog.d.ts +1 -1
  47. package/dist/components/dialogs/UserProvidedDomainsDialog.js +1 -1
  48. package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +1 -1
  49. package/dist/components/header/GappynessSlider.d.ts +1 -1
  50. package/dist/components/header/Header.d.ts +1 -1
  51. package/dist/components/header/Header.js +10 -10
  52. package/dist/components/header/Header.js.map +1 -1
  53. package/dist/components/header/HeaderInfoArea.d.ts +1 -1
  54. package/dist/components/header/HeaderMenu.d.ts +1 -1
  55. package/dist/components/header/HeaderMenu.js +6 -6
  56. package/dist/components/header/HeaderMenu.js.map +1 -1
  57. package/dist/components/header/HeaderStatusArea.d.ts +1 -1
  58. package/dist/components/header/MultiAlignmentSelector.d.ts +1 -1
  59. package/dist/components/header/SettingsMenu.d.ts +1 -1
  60. package/dist/components/header/SettingsMenu.js +1 -1
  61. package/dist/components/header/SettingsMenu.js.map +1 -1
  62. package/dist/components/header/ZoomControls.d.ts +1 -1
  63. package/dist/components/header/ZoomMenu.d.ts +1 -1
  64. package/dist/components/header/ZoomStar.d.ts +1 -1
  65. package/dist/components/import/ImportForm.d.ts +1 -1
  66. package/dist/components/import/ImportForm.js +2 -2
  67. package/dist/components/import/ImportForm.js.map +1 -1
  68. package/dist/components/import/ImportFormExamples.d.ts +1 -1
  69. package/dist/components/import/ImportFormExamples.js +2 -2
  70. package/dist/components/import/ImportFormExamples.js.map +1 -1
  71. package/dist/components/import/util.d.ts +1 -1
  72. package/dist/components/minimap/Minimap.d.ts +1 -1
  73. package/dist/components/minimap/MinimapSVG.d.ts +1 -1
  74. package/dist/components/msa/MSACanvas.d.ts +1 -1
  75. package/dist/components/msa/MSACanvas.js +2 -2
  76. package/dist/components/msa/MSACanvas.js.map +1 -1
  77. package/dist/components/msa/MSACanvasBlock.d.ts +1 -1
  78. package/dist/components/msa/MSACanvasBlock.js +3 -3
  79. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  80. package/dist/components/msa/MSAMouseoverCanvas.d.ts +1 -1
  81. package/dist/components/msa/MSAMouseoverCanvas.js +1 -1
  82. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  83. package/dist/components/msa/MSAPanel.d.ts +1 -1
  84. package/dist/components/msa/MSAPanel.js +2 -2
  85. package/dist/components/msa/MSAPanel.js.map +1 -1
  86. package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +1 -1
  87. package/dist/components/msa/renderMSABlock.d.ts +1 -1
  88. package/dist/components/msa/renderMSAMouseover.d.ts +1 -1
  89. package/dist/components/tracks/renderTracksSvg.d.ts +2 -2
  90. package/dist/components/tree/TreeBranchMenu.d.ts +1 -1
  91. package/dist/components/tree/TreeCanvas.d.ts +1 -1
  92. package/dist/components/tree/TreeCanvas.js +2 -2
  93. package/dist/components/tree/TreeCanvas.js.map +1 -1
  94. package/dist/components/tree/TreeCanvasBlock.d.ts +1 -1
  95. package/dist/components/tree/TreeCanvasBlock.js +3 -3
  96. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  97. package/dist/components/tree/TreeNodeMenu.d.ts +1 -1
  98. package/dist/components/tree/TreeNodeMenu.js +1 -1
  99. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  100. package/dist/components/tree/TreePanel.d.ts +1 -1
  101. package/dist/components/tree/TreePanel.js +1 -1
  102. package/dist/components/tree/TreePanel.js.map +1 -1
  103. package/dist/components/tree/TreeRuler.d.ts +1 -1
  104. package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts +1 -1
  105. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js +1 -1
  106. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map +1 -1
  107. package/dist/components/tree/renderTreeCanvas.d.ts +1 -1
  108. package/dist/createPaletteMap.d.ts +7 -0
  109. package/dist/createPaletteMap.js +11 -0
  110. package/dist/createPaletteMap.js.map +1 -0
  111. package/dist/createPaletteMap.test.d.ts +1 -0
  112. package/dist/createPaletteMap.test.js +49 -0
  113. package/dist/createPaletteMap.test.js.map +1 -0
  114. package/dist/index.d.ts +2 -2
  115. package/dist/index.js +2 -2
  116. package/dist/index.js.map +1 -1
  117. package/dist/launchInterProScan.d.ts +1 -1
  118. package/dist/launchInterProScan.js +1 -1
  119. package/dist/launchInterProScan.js.map +1 -1
  120. package/dist/model/msaModel.js +1 -1
  121. package/dist/model/msaModel.js.map +1 -1
  122. package/dist/model/treeModel.js +1 -1
  123. package/dist/model/treeModel.js.map +1 -1
  124. package/dist/model.d.ts +11 -3
  125. package/dist/model.js +54 -35
  126. package/dist/model.js.map +1 -1
  127. package/dist/neighborJoining.test.js +1 -1
  128. package/dist/neighborJoining.test.js.map +1 -1
  129. package/dist/parseAsn1.test.js +1 -1
  130. package/dist/parseAsn1.test.js.map +1 -1
  131. package/dist/renderToSvg.d.ts +1 -1
  132. package/dist/renderToSvg.js +10 -10
  133. package/dist/renderToSvg.js.map +1 -1
  134. package/dist/reparseTree.d.ts +1 -1
  135. package/dist/rowCoordinateCalculations.js +1 -1
  136. package/dist/rowCoordinateCalculations.js.map +1 -1
  137. package/dist/rowCoordinateCalculations.test.js +1 -1
  138. package/dist/rowCoordinateCalculations.test.js.map +1 -1
  139. package/dist/seqPosToGlobalCol.js +1 -1
  140. package/dist/seqPosToGlobalCol.js.map +1 -1
  141. package/dist/seqPosToGlobalCol.test.js +1 -1
  142. package/dist/seqPosToGlobalCol.test.js.map +1 -1
  143. package/dist/util.d.ts +1 -1
  144. package/dist/vendor/copyToClipboard.d.ts +10 -0
  145. package/dist/vendor/copyToClipboard.js +113 -0
  146. package/dist/vendor/copyToClipboard.js.map +1 -0
  147. package/dist/vendor/fileSaver.d.ts +11 -0
  148. package/dist/vendor/fileSaver.js +80 -0
  149. package/dist/vendor/fileSaver.js.map +1 -0
  150. package/dist/version.d.ts +1 -1
  151. package/dist/version.js +1 -1
  152. package/dist/webpack.d.ts +2 -2
  153. package/dist/webpack.js +2 -2
  154. package/dist/webpack.js.map +1 -1
  155. package/package.json +25 -22
  156. package/src/colorSchemes.ts +1 -1
  157. package/src/components/ConservationTrack.tsx +2 -2
  158. package/src/components/Loading.tsx +3 -3
  159. package/src/components/MSAView.tsx +12 -9
  160. package/src/components/ResizeHandles.tsx +1 -1
  161. package/src/components/SequenceTextArea.tsx +2 -2
  162. package/src/components/TextTrack.tsx +3 -3
  163. package/src/components/Track.tsx +2 -2
  164. package/src/components/VerticalScrollbar.tsx +1 -1
  165. package/src/components/dialogs/AboutDialog.tsx +1 -1
  166. package/src/components/dialogs/AddTrackDialog.tsx +1 -1
  167. package/src/components/dialogs/DomainDialog.tsx +4 -4
  168. package/src/components/dialogs/ExportSVGDialog.tsx +2 -2
  169. package/src/components/dialogs/FeatureDialog.tsx +2 -2
  170. package/src/components/dialogs/InterProScanDialog.tsx +2 -2
  171. package/src/components/dialogs/MetadataDialog.tsx +2 -2
  172. package/src/components/dialogs/SettingsDialog.tsx +3 -3
  173. package/src/components/dialogs/TrackInfoDialog.tsx +2 -1
  174. package/src/components/dialogs/UserProvidedDomainsDialog.tsx +3 -3
  175. package/src/components/header/GappynessSlider.tsx +1 -1
  176. package/src/components/header/Header.tsx +11 -11
  177. package/src/components/header/HeaderInfoArea.tsx +1 -1
  178. package/src/components/header/HeaderMenu.tsx +9 -7
  179. package/src/components/header/HeaderStatusArea.tsx +1 -1
  180. package/src/components/header/MultiAlignmentSelector.tsx +1 -1
  181. package/src/components/header/SettingsMenu.tsx +2 -2
  182. package/src/components/header/ZoomControls.tsx +1 -1
  183. package/src/components/header/ZoomMenu.tsx +1 -1
  184. package/src/components/header/ZoomStar.tsx +1 -1
  185. package/src/components/import/ImportForm.tsx +3 -3
  186. package/src/components/import/ImportFormExamples.tsx +3 -3
  187. package/src/components/import/util.ts +1 -1
  188. package/src/components/minimap/Minimap.tsx +1 -1
  189. package/src/components/minimap/MinimapSVG.tsx +1 -1
  190. package/src/components/msa/MSACanvas.tsx +3 -3
  191. package/src/components/msa/MSACanvasBlock.tsx +4 -4
  192. package/src/components/msa/MSAMouseoverCanvas.tsx +2 -2
  193. package/src/components/msa/MSAPanel.tsx +3 -3
  194. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +2 -2
  195. package/src/components/msa/renderMSABlock.ts +2 -2
  196. package/src/components/msa/renderMSAMouseover.ts +1 -1
  197. package/src/components/tracks/renderTracksSvg.ts +2 -2
  198. package/src/components/tree/TreeBranchMenu.tsx +1 -1
  199. package/src/components/tree/TreeCanvas.tsx +3 -3
  200. package/src/components/tree/TreeCanvasBlock.tsx +4 -4
  201. package/src/components/tree/TreeNodeMenu.tsx +4 -2
  202. package/src/components/tree/TreePanel.tsx +2 -2
  203. package/src/components/tree/TreeRuler.tsx +1 -1
  204. package/src/components/tree/dialogs/TreeNodeInfoDialog.tsx +2 -2
  205. package/src/components/tree/renderTreeCanvas.ts +1 -1
  206. package/src/createPaletteMap.test.ts +57 -0
  207. package/src/createPaletteMap.ts +11 -0
  208. package/src/index.ts +2 -2
  209. package/src/launchInterProScan.ts +2 -2
  210. package/src/model/msaModel.ts +1 -1
  211. package/src/model/treeModel.ts +1 -1
  212. package/src/model.ts +57 -37
  213. package/src/neighborJoining.test.ts +1 -1
  214. package/src/parseAsn1.test.ts +1 -1
  215. package/src/renderToSvg.tsx +17 -19
  216. package/src/reparseTree.ts +1 -1
  217. package/src/rowCoordinateCalculations.test.ts +1 -1
  218. package/src/rowCoordinateCalculations.ts +1 -1
  219. package/src/seqPosToGlobalCol.test.ts +1 -1
  220. package/src/seqPosToGlobalCol.ts +1 -1
  221. package/src/util.ts +1 -1
  222. package/src/vendor/copyToClipboard.ts +125 -0
  223. package/src/vendor/fileSaver.ts +107 -0
  224. package/src/version.ts +1 -1
  225. package/src/webpack.ts +2 -2
  226. package/src/declare.d.ts +0 -1
package/dist/model.js.map CHANGED
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package/dist/neighborJoining.test.js CHANGED
@@ -1,5 +1,5 @@
1
1
  import { describe, expect, test } from 'vitest';
2
- import { calculateNeighborJoiningTree } from './neighborJoining';
2
+ import { calculateNeighborJoiningTree } from "./neighborJoining.js";
3
3
  describe('calculateNeighborJoiningTree', () => {
4
4
  test('generates valid Newick tree for 2 sequences', () => {
5
5
  const rows = [
package/dist/neighborJoining.test.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"neighborJoining.test.js","sourceRoot":"","sources":["../src/neighborJoining.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAE/C,OAAO,EAAE,4BAA4B,EAAE,MAAM,mBAAmB,CAAA;AAEhE,QAAQ,CAAC,8BAA8B,EAAE,GAAG,EAAE;IAC5C,IAAI,CAAC,6CAA6C,EAAE,GAAG,EAAE;QACvD,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,MAAM,CAAC;YAChB,CAAC,MAAM,EAAE,MAAM,CAAC;SACjB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;QAC9B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,6CAA6C,EAAE,GAAG,EAAE;QACvD,MAAM,IAAI,GAAuB;YAC/B,CAAC,OAAO,EAAE,YAAY,CAAC;YACvB,CAAC,OAAO,EAAE,YAAY,CAAC;YACvB,CAAC,SAAS,EAAE,YAAY,CAAC;SAC1B,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QAC/B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QAC/B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;QACjC,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;IAC7B,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,6CAA6C,EAAE,GAAG,EAAE;QACvD,MAAM,IAAI,GAAuB;YAC/B,CAAC,GAAG,EAAE,eAAe,CAAC;YACtB,CAAC,GAAG,EAAE,eAAe,CAAC;YACtB,CAAC,GAAG,EAAE,eAAe,CAAC;YACtB,CAAC,GAAG,EAAE,eAAe,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;IAC7B,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,iCAAiC,EAAE,GAAG,EAAE;QAC3C,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,4CAA4C;QAC5C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,WAAW,CAAC,CAAA;IACnC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,IAAI,GAAuB,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAA;QACnD,MAAM,CAAC,GAAG,EAAE,CAAC,4BAA4B,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CACtD,2BAA2B,CAC5B,CAAA;IACH,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,6BAA6B,EAAE,GAAG,EAAE;QACvC,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;QAC9B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;QAC9B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,8CAA8C,EAAE,GAAG,EAAE;QACxD,MAAM,IAAI,GAAuB;YAC/B,CAAC,OAAO,EAAE,MAAM,CAAC;YACjB,CAAC,QAAQ,EAAE,MAAM,CAAC;SACnB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,uCAAuC;QACvC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;QACjC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;IACtC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,uDAAuD;QACvD,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,CAAA;QACxC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAA;QAC5B,IAAI,KAAK,EAAE,CAAC;YACV,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACtD,iEAAiE;YACjE,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;gBAC1B,MAAM,CAAC,GAAG,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,CAAA;YACvC,CAAC;QACH,CAAC;IACH,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,gDAAgD,EAAE,GAAG,EAAE;QAC1D,MAAM,IAAI,GAAuB;YAC/B,CAAC,UAAU,EAAE,eAAe,CAAC;YAC7B,CAAC,UAAU,EAAE,eAAe,CAAC;YAC7B,CAAC,WAAW,EAAE,eAAe,CAAC;SAC/B,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,8DAA8D;QAC9D,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,CAAA;QAClC,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,CAAA;QAClC,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,WAAW,CAAC,CAAA;IACrC,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}
1
+ {"version":3,"file":"neighborJoining.test.js","sourceRoot":"","sources":["../src/neighborJoining.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAE/C,OAAO,EAAE,4BAA4B,EAAE,MAAM,sBAAsB,CAAA;AAEnE,QAAQ,CAAC,8BAA8B,EAAE,GAAG,EAAE;IAC5C,IAAI,CAAC,6CAA6C,EAAE,GAAG,EAAE;QACvD,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,MAAM,CAAC;YAChB,CAAC,MAAM,EAAE,MAAM,CAAC;SACjB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;QAC9B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,6CAA6C,EAAE,GAAG,EAAE;QACvD,MAAM,IAAI,GAAuB;YAC/B,CAAC,OAAO,EAAE,YAAY,CAAC;YACvB,CAAC,OAAO,EAAE,YAAY,CAAC;YACvB,CAAC,SAAS,EAAE,YAAY,CAAC;SAC1B,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QAC/B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QAC/B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;QACjC,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;IAC7B,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,6CAA6C,EAAE,GAAG,EAAE;QACvD,MAAM,IAAI,GAAuB;YAC/B,CAAC,GAAG,EAAE,eAAe,CAAC;YACtB,CAAC,GAAG,EAAE,eAAe,CAAC;YACtB,CAAC,GAAG,EAAE,eAAe,CAAC;YACtB,CAAC,GAAG,EAAE,eAAe,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;QAC3B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,GAAG,CAAC,CAAA;IAC7B,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,iCAAiC,EAAE,GAAG,EAAE;QAC3C,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,4CAA4C;QAC5C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,WAAW,CAAC,CAAA;IACnC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,IAAI,GAAuB,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAA;QACnD,MAAM,CAAC,GAAG,EAAE,CAAC,4BAA4B,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CACtD,2BAA2B,CAC5B,CAAA;IACH,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,6BAA6B,EAAE,GAAG,EAAE;QACvC,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;QAC9B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;QAC9B,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;IAChC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,8CAA8C,EAAE,GAAG,EAAE;QACxD,MAAM,IAAI,GAAuB;YAC/B,CAAC,OAAO,EAAE,MAAM,CAAC;YACjB,CAAC,QAAQ,EAAE,MAAM,CAAC;SACnB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,uCAAuC;QACvC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;QACjC,MAAM,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;IACtC,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,IAAI,GAAuB;YAC/B,CAAC,MAAM,EAAE,YAAY,CAAC;YACtB,CAAC,MAAM,EAAE,YAAY,CAAC;SACvB,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,uDAAuD;QACvD,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,CAAA;QACxC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAA;QAC5B,IAAI,KAAK,EAAE,CAAC;YACV,MAAM,OAAO,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACtD,iEAAiE;YACjE,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;gBAC1B,MAAM,CAAC,GAAG,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,CAAA;YACvC,CAAC;QACH,CAAC;IACH,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,gDAAgD,EAAE,GAAG,EAAE;QAC1D,MAAM,IAAI,GAAuB;YAC/B,CAAC,UAAU,EAAE,eAAe,CAAC;YAC7B,CAAC,UAAU,EAAE,eAAe,CAAC;YAC7B,CAAC,WAAW,EAAE,eAAe,CAAC;SAC/B,CAAA;QACD,MAAM,IAAI,GAAG,4BAA4B,CAAC,IAAI,CAAC,CAAA;QAE/C,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,CAAA;QAC1B,8DAA8D;QAC9D,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,CAAA;QAClC,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,CAAA;QAClC,MAAM,CAAC,IAAI,CAAC,CAAC,SAAS,CAAC,WAAW,CAAC,CAAA;IACrC,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}
package/dist/parseAsn1.test.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import fs from 'fs';
2
2
  import { expect, test } from 'vitest';
3
- import { parseAsn1 } from './parseAsn1';
3
+ import { parseAsn1 } from "./parseAsn1.js";
4
4
  const r = fs.readFileSync(require.resolve('../test/data/tree.asn'), 'utf8');
5
5
  test('real data file', () => {
6
6
  expect(parseAsn1(r)).toMatchSnapshot();
package/dist/parseAsn1.test.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"parseAsn1.test.js","sourceRoot":"","sources":["../src/parseAsn1.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,IAAI,CAAA;AAEnB,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAErC,OAAO,EAAE,SAAS,EAAE,MAAM,aAAa,CAAA;AAEvC,MAAM,CAAC,GAAG,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,uBAAuB,CAAC,EAAE,MAAM,CAAC,CAAA;AAE3E,IAAI,CAAC,gBAAgB,EAAE,GAAG,EAAE;IAC1B,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,eAAe,EAAE,CAAA;AACxC,CAAC,CAAC,CAAA"}
1
+ {"version":3,"file":"parseAsn1.test.js","sourceRoot":"","sources":["../src/parseAsn1.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,IAAI,CAAA;AAEnB,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAErC,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAgB,CAAA;AAE1C,MAAM,CAAC,GAAG,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,uBAAuB,CAAC,EAAE,MAAM,CAAC,CAAA;AAE3E,IAAI,CAAC,gBAAgB,EAAE,GAAG,EAAE;IAC1B,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,eAAe,EAAE,CAAA;AACxC,CAAC,CAAC,CAAA"}
package/dist/renderToSvg.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- import type { MsaViewModel } from './model';
1
+ import type { MsaViewModel } from './model.ts';
2
2
  import type { Theme } from '@mui/material';
3
3
  export interface ExportSvgOptions {
4
4
  theme: Theme;
package/dist/renderToSvg.js CHANGED
@@ -2,12 +2,12 @@
2
2
  import React from 'react';
3
3
  import { renderToStaticMarkup } from '@jbrowse/core/util';
4
4
  import { when } from 'mobx';
5
- import MinimapSVG from './components/minimap/MinimapSVG';
6
- import { renderBoxFeatureCanvasBlock } from './components/msa/renderBoxFeatureCanvasBlock';
7
- import { renderMSABlock } from './components/msa/renderMSABlock';
8
- import { renderAllTracks } from './components/tracks/renderTracksSvg';
9
- import { renderTreeCanvas } from './components/tree/renderTreeCanvas';
10
- import { colorContrast } from './util';
5
+ import MinimapSVG from "./components/minimap/MinimapSVG.js";
6
+ import { renderBoxFeatureCanvasBlock } from "./components/msa/renderBoxFeatureCanvasBlock.js";
7
+ import { renderMSABlock } from "./components/msa/renderMSABlock.js";
8
+ import { renderAllTracks } from "./components/tracks/renderTracksSvg.js";
9
+ import { renderTreeCanvas } from "./components/tree/renderTreeCanvas.js";
10
+ import { colorContrast } from "./util.js";
11
11
  export async function renderToSvg(model, opts) {
12
12
  await when(() => !!model.dataInitialized);
13
13
  const { width, height, scrollX, scrollY, totalTrackAreaHeight } = model;
@@ -44,7 +44,7 @@ export async function renderToSvg(model, opts) {
44
44
  throw new Error('unknown export type');
45
45
  }
46
46
  async function render({ width, height, contentHeight, trackHeight, offsetX, offsetY, theme, model, includeMinimap, includeTracks, }) {
47
- const { Context } = await import('svgcanvas');
47
+ const { Context } = await import('@jbrowse/svgcanvas');
48
48
  const Wrapper = includeMinimap ? MinimapWrapper : NullWrapper;
49
49
  return renderToStaticMarkup(React.createElement(SvgWrapper, { width: width, height: height },
50
50
  React.createElement(Wrapper, { model: model },
@@ -57,8 +57,8 @@ function CoreRendering({ model, theme, width, contentHeight, offsetX, offsetY, C
57
57
  const clipId1 = `tree-${id}`;
58
58
  const clipId2 = `msa-${id}`;
59
59
  const contrastScheme = colorContrast(colorScheme, theme);
60
- const ctx1 = Context(width, contentHeight);
61
- const ctx2 = Context(width, contentHeight);
60
+ const ctx1 = new Context(width, contentHeight);
61
+ const ctx2 = new Context(width, contentHeight);
62
62
  renderBoxFeatureCanvasBlock({
63
63
  ctx: ctx2,
64
64
  offsetX,
@@ -102,7 +102,7 @@ function TrackRendering({ model, theme, width, trackHeight, offsetX, Context, })
102
102
  const clipId = `tracks-${id}`;
103
103
  const contrastScheme = colorContrast(colorScheme, theme);
104
104
  const msaAreaWidth = width - treeAreaWidth;
105
- const ctx = Context(msaAreaWidth, trackHeight);
105
+ const ctx = new Context(msaAreaWidth, trackHeight);
106
106
  renderAllTracks({
107
107
  model,
108
108
  ctx,
package/dist/renderToSvg.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/reparseTree.d.ts CHANGED
@@ -1,2 +1,2 @@
1
- import type { NodeWithIds } from './types';
1
+ import type { NodeWithIds } from './types.ts';
2
2
  export declare function reparseTree(tree: NodeWithIds): NodeWithIds;
package/dist/rowCoordinateCalculations.js CHANGED
@@ -1,4 +1,4 @@
1
- import { isBlank } from './util';
1
+ import { isBlank } from "./util.js";
2
2
  /**
3
3
  * MSA Coordinate Systems:
4
4
  *
package/dist/rowCoordinateCalculations.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/rowCoordinateCalculations.test.js CHANGED
@@ -1,5 +1,5 @@
1
1
  import { expect, test } from 'vitest';
2
- import { globalColToSeqPos, globalColToVisibleCol, visibleColToGlobalCol, visibleColToSeqPos, } from './rowCoordinateCalculations';
2
+ import { globalColToSeqPos, globalColToVisibleCol, visibleColToGlobalCol, visibleColToSeqPos, } from "./rowCoordinateCalculations.js";
3
3
  // Tests for visibleColToGlobalCol (visible → global)
4
4
  test('visibleColToGlobalCol with blanks at positions [2, 5, 8]', () => {
5
5
  const blanks = [2, 5, 8];
package/dist/rowCoordinateCalculations.test.js.map CHANGED
@@ -1 +1 @@
1
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package/dist/seqPosToGlobalCol.js CHANGED
@@ -1,4 +1,4 @@
1
- import { isBlank } from './util';
1
+ import { isBlank } from "./util.js";
2
2
  /**
3
3
  * Convert a sequence position (ungapped, 0-based) to a global column index.
4
4
  * This finds the global column that contains the Nth non-gap character.
package/dist/seqPosToGlobalCol.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"seqPosToGlobalCol.js","sourceRoot":"","sources":["../src/seqPosToGlobalCol.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,QAAQ,CAAA;AAEhC;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,iBAAiB,CAAC,EAChC,GAAG,EACH,MAAM,GAIP;IACC,IAAI,WAAW,GAAG,CAAC,CAAA;IACnB,IAAI,SAAS,GAAG,CAAC,CAAA;IACjB,uCAAuC;IACvC,OAAO,SAAS,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;QAC9B,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC;YAC7B,IAAI,WAAW,KAAK,MAAM,EAAE,CAAC;gBAC3B,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,WAAW,EAAE,CAAA;QACf,CAAC;QACD,SAAS,EAAE,CAAA;IACb,CAAC;IACD,oEAAoE;IACpE,iEAAiE;IACjE,OAAO,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;AACrC,CAAC"}
1
+ {"version":3,"file":"seqPosToGlobalCol.js","sourceRoot":"","sources":["../src/seqPosToGlobalCol.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAA;AAEnC;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,iBAAiB,CAAC,EAChC,GAAG,EACH,MAAM,GAIP;IACC,IAAI,WAAW,GAAG,CAAC,CAAA;IACnB,IAAI,SAAS,GAAG,CAAC,CAAA;IACjB,uCAAuC;IACvC,OAAO,SAAS,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;QAC9B,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC;YAC7B,IAAI,WAAW,KAAK,MAAM,EAAE,CAAC;gBAC3B,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,WAAW,EAAE,CAAA;QACf,CAAC;QACD,SAAS,EAAE,CAAA;IACb,CAAC;IACD,oEAAoE;IACpE,iEAAiE;IACjE,OAAO,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;AACrC,CAAC"}
package/dist/seqPosToGlobalCol.test.js CHANGED
@@ -1,5 +1,5 @@
1
1
  import { describe, expect, test } from 'vitest';
2
- import { seqPosToGlobalCol } from './seqPosToGlobalCol';
2
+ import { seqPosToGlobalCol } from "./seqPosToGlobalCol.js";
3
3
  describe('seqPosToGlobalCol', () => {
4
4
  test('converts sequence position to global column with no gaps', () => {
5
5
  const row = 'ATGCATGC';
package/dist/seqPosToGlobalCol.test.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"seqPosToGlobalCol.test.js","sourceRoot":"","sources":["../src/seqPosToGlobalCol.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAE/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAA;AAEvD,QAAQ,CAAC,mBAAmB,EAAE,GAAG,EAAE;IACjC,IAAI,CAAC,0DAA0D,EAAE,GAAG,EAAE;QACpE,MAAM,GAAG,GAAG,UAAU,CAAA;QACtB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,uDAAuD,EAAE,GAAG,EAAE;QACjE,MAAM,GAAG,GAAG,aAAa,CAAA;QACzB,kEAAkE;QAClE,iEAAiE;QAEjE,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA,CAAC,IAAI;QAC3D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA,CAAC,WAAW;IACpE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,mBAAmB,EAAE,GAAG,EAAE;QAC7B,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC3D,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,4BAA4B,EAAE,GAAG,EAAE;QACtC,MAAM,GAAG,GAAG,SAAS,CAAA;QACrB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,GAAG,GAAG,SAAS,CAAA;QACrB,6CAA6C;QAC7C,wCAAwC;QAExC,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,sBAAsB,EAAE,GAAG,EAAE;QAChC,MAAM,GAAG,GAAG,OAAO,CAAA;QACnB,mCAAmC;QACnC,mCAAmC;QAEnC,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;IAC5D,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,uBAAuB,EAAE,GAAG,EAAE;QACjC,MAAM,GAAG,GAAG,OAAO,CAAA;QACnB,mCAAmC;QACnC,yBAAyB;QAEzB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}
1
+ {"version":3,"file":"seqPosToGlobalCol.test.js","sourceRoot":"","sources":["../src/seqPosToGlobalCol.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAE/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAE1D,QAAQ,CAAC,mBAAmB,EAAE,GAAG,EAAE;IACjC,IAAI,CAAC,0DAA0D,EAAE,GAAG,EAAE;QACpE,MAAM,GAAG,GAAG,UAAU,CAAA;QACtB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,uDAAuD,EAAE,GAAG,EAAE;QACjE,MAAM,GAAG,GAAG,aAAa,CAAA;QACzB,kEAAkE;QAClE,iEAAiE;QAEjE,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA,CAAC,IAAI;QAC3D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA,CAAC,WAAW;IACpE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,mBAAmB,EAAE,GAAG,EAAE;QAC7B,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC3D,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,4BAA4B,EAAE,GAAG,EAAE;QACtC,MAAM,GAAG,GAAG,SAAS,CAAA;QACrB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,GAAG,GAAG,SAAS,CAAA;QACrB,6CAA6C;QAC7C,wCAAwC;QAExC,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,sBAAsB,EAAE,GAAG,EAAE;QAChC,MAAM,GAAG,GAAG,OAAO,CAAA;QACnB,mCAAmC;QACnC,mCAAmC;QAEnC,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;IAC5D,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,uBAAuB,EAAE,GAAG,EAAE;QACjC,MAAM,GAAG,GAAG,OAAO,CAAA;QACnB,mCAAmC;QACnC,yBAAyB;QAEzB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}
package/dist/util.d.ts CHANGED
@@ -1,4 +1,4 @@
1
- import type { NodeWithIds } from './types';
1
+ import type { NodeWithIds } from './types.ts';
2
2
  import type { Theme } from '@mui/material';
3
3
  import type { HierarchyNode } from 'd3-hierarchy';
4
4
  export declare function transform<T>(obj: Record<string, T>, cb: (arg0: [string, T]) => [string, T]): {
package/dist/vendor/copyToClipboard.d.ts ADDED
@@ -0,0 +1,10 @@
1
+ /**
2
+ * Copy text to clipboard utility.
3
+ * Uses modern Clipboard API with fallback to execCommand.
4
+ */
5
+ export interface CopyOptions {
6
+ debug?: boolean;
7
+ format?: string;
8
+ onCopy?: (clipboardData: DataTransfer) => void;
9
+ }
10
+ export default function copy(text: string, options?: CopyOptions): boolean;
package/dist/vendor/copyToClipboard.js ADDED
@@ -0,0 +1,113 @@
1
+ /**
2
+ * Copy text to clipboard utility.
3
+ * Uses modern Clipboard API with fallback to execCommand.
4
+ */
5
+ function deselectCurrent() {
6
+ const selection = document.getSelection();
7
+ if (!selection?.rangeCount) {
8
+ return () => { };
9
+ }
10
+ const active = document.activeElement;
11
+ const ranges = [];
12
+ for (let i = 0; i < selection.rangeCount; i++) {
13
+ ranges.push(selection.getRangeAt(i));
14
+ }
15
+ const tagName = active?.tagName.toUpperCase();
16
+ if (tagName === 'INPUT' || tagName === 'TEXTAREA') {
17
+ active?.blur();
18
+ }
19
+ selection.removeAllRanges();
20
+ return () => {
21
+ if (selection.type === 'Caret') {
22
+ selection.removeAllRanges();
23
+ }
24
+ if (!selection.rangeCount) {
25
+ for (const range of ranges) {
26
+ selection.addRange(range);
27
+ }
28
+ }
29
+ active?.focus();
30
+ };
31
+ }
32
+ export default function copy(text, options) {
33
+ const debug = options?.debug || false;
34
+ let success = false;
35
+ let reselectPrevious;
36
+ let range;
37
+ let selection = null;
38
+ let mark;
39
+ try {
40
+ reselectPrevious = deselectCurrent();
41
+ range = document.createRange();
42
+ selection = document.getSelection();
43
+ mark = document.createElement('span');
44
+ mark.textContent = text;
45
+ mark.ariaHidden = 'true';
46
+ mark.style.all = 'unset';
47
+ mark.style.position = 'fixed';
48
+ mark.style.top = '0';
49
+ mark.style.clip = 'rect(0, 0, 0, 0)';
50
+ mark.style.whiteSpace = 'pre';
51
+ mark.style.webkitUserSelect = 'text';
52
+ mark.style.MozUserSelect = 'text';
53
+ mark.style.msUserSelect = 'text';
54
+ mark.style.userSelect = 'text';
55
+ mark.addEventListener('copy', e => {
56
+ e.stopPropagation();
57
+ if (options?.format) {
58
+ e.preventDefault();
59
+ if (e.clipboardData) {
60
+ e.clipboardData.clearData();
61
+ e.clipboardData.setData(options.format, text);
62
+ }
63
+ }
64
+ if (options?.onCopy && e.clipboardData) {
65
+ e.preventDefault();
66
+ options.onCopy(e.clipboardData);
67
+ }
68
+ });
69
+ document.body.append(mark);
70
+ range.selectNodeContents(mark);
71
+ selection?.addRange(range);
72
+ const successful = document.execCommand('copy');
73
+ if (!successful) {
74
+ throw new Error('copy command was unsuccessful');
75
+ }
76
+ success = true;
77
+ }
78
+ catch (err) {
79
+ if (debug) {
80
+ console.error('unable to copy using execCommand:', err);
81
+ }
82
+ try {
83
+ const clipboardData = window
84
+ .clipboardData;
85
+ if (clipboardData) {
86
+ clipboardData.setData(options?.format || 'text', text);
87
+ options?.onCopy?.(clipboardData);
88
+ success = true;
89
+ }
90
+ }
91
+ catch (err2) {
92
+ if (debug) {
93
+ console.error('unable to copy using clipboardData:', err2);
94
+ }
95
+ }
96
+ }
97
+ finally {
98
+ if (selection) {
99
+ if (typeof selection.removeRange === 'function' && range) {
100
+ selection.removeRange(range);
101
+ }
102
+ else {
103
+ selection.removeAllRanges();
104
+ }
105
+ }
106
+ if (mark) {
107
+ mark.remove();
108
+ }
109
+ reselectPrevious?.();
110
+ }
111
+ return success;
112
+ }
113
+ //# sourceMappingURL=copyToClipboard.js.map