react-msaview 4.8.1 → 5.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +9 -2
- package/bundle/index.js +127 -227
- package/bundle/index.js.LICENSE.txt +0 -68
- package/bundle/index.js.map +1 -1
- package/dist/components/ConservationTrack.js +1 -2
- package/dist/components/ConservationTrack.js.map +1 -1
- package/dist/components/msa/MSAMouseoverCanvas.js +1 -1
- package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js +1 -1
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/index.d.ts +1 -0
- package/dist/model/DataModel.d.ts +5 -5
- package/dist/model/DataModel.js +1 -1
- package/dist/model/DataModel.js.map +1 -1
- package/dist/model/DialogQueue.d.ts +2 -2
- package/dist/model/DialogQueue.js +1 -1
- package/dist/model/DialogQueue.js.map +1 -1
- package/dist/model/msaModel.d.ts +4 -4
- package/dist/model/msaModel.js +1 -1
- package/dist/model/msaModel.js.map +1 -1
- package/dist/model/treeModel.d.ts +10 -10
- package/dist/model/treeModel.js +1 -1
- package/dist/model/treeModel.js.map +1 -1
- package/dist/model.d.ts +513 -417
- package/dist/model.js +9 -5
- package/dist/model.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/package.json +7 -7
- package/src/components/ConservationTrack.tsx +1 -2
- package/src/components/msa/MSAMouseoverCanvas.tsx +1 -1
- package/src/components/tree/TreeCanvas.tsx +1 -1
- package/src/index.ts +1 -0
- package/src/model/DataModel.ts +1 -1
- package/src/model/DialogQueue.ts +1 -1
- package/src/model/msaModel.ts +1 -1
- package/src/model/treeModel.ts +1 -1
- package/src/model.ts +15 -10
- package/src/version.ts +1 -1
- package/dist/__snapshots__/parseAsn1.test.js.snap +0 -2400
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@@ -21,8 +21,7 @@ const ConservationBlock = observer(function ({ model, offsetX, trackHeight, }) {
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const value = conservation[i];
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const barHeight = value * trackHeight;
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const x = i * colWidth;
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-
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ctx.fillStyle = `hsl(${hue}, 70%, 50%)`;
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ctx.fillStyle = 'gray';
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ctx.fillRect(x, trackHeight - barHeight, colWidth, barHeight);
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}
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}, [
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@@ -1 +1 @@
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-
{"version":3,"file":"ConservationTrack.js","sourceRoot":"","sources":["../../src/components/ConservationTrack.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,kBAAkB,EAAE,YAAY,EAAE,GACtE,KAAK,CAAA;IAEP,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAE3C,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;YACjB,OAAM;QACR,CAAC;QAED,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QACxC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAA;QACjD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,WAAW,CAAC,CAAA;QAC3C,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;QAE1B,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAA;QAC1D,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,SAAS,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAA;QAErE,KAAK,IAAI,CAAC,GAAG,MAAM,EAAE,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC9D,MAAM,KAAK,GAAG,YAAY,CAAC,CAAC,CAAE,CAAA;YAC9B,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAA;YACrC,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAA;YAEtB,
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{"version":3,"file":"ConservationTrack.js","sourceRoot":"","sources":["../../src/components/ConservationTrack.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,KAAK,EACL,OAAO,EACP,WAAW,GAKZ;IACC,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,kBAAkB,EAAE,YAAY,EAAE,GACtE,KAAK,CAAA;IAEP,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAE3C,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;YACjB,OAAM;QACR,CAAC;QAED,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QACxC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAA;QACjD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,WAAW,CAAC,CAAA;QAC3C,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;QAE1B,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAA;QAC1D,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,SAAS,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAA;QAErE,KAAK,IAAI,CAAC,GAAG,MAAM,EAAE,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC9D,MAAM,KAAK,GAAG,YAAY,CAAC,CAAC,CAAE,CAAA;YAC9B,MAAM,SAAS,GAAG,KAAK,GAAG,WAAW,CAAA;YACrC,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAA;YAEtB,GAAG,CAAC,SAAS,GAAG,MAAM,CAAA;YACtB,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,WAAW,GAAG,SAAS,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;QAC/D,CAAC;IACH,CAAC,EAAE;QACD,SAAS;QACT,QAAQ;QACR,WAAW;QACX,OAAO;QACP,kBAAkB;QAClB,YAAY;KACb,CAAC,CAAA;IAEF,OAAO,CACL,gCACE,GAAG,EAAE,GAAG,EACR,MAAM,EAAE,WAAW,GAAG,kBAAkB,EACxC,KAAK,EAAE,SAAS,GAAG,kBAAkB,EACrC,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,IAAI,EAAE,OAAO,GAAG,OAAO;YACvB,KAAK,EAAE,SAAS;YAChB,MAAM,EAAE,WAAW;SACpB,GACD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,iBAAiB,GAAG,QAAQ,CAAC,UAAU,EAC3C,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IACvC,MAAM,WAAW,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,CAAA;IAEtC,OAAO,CACL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,YAAY;YACnB,QAAQ,EAAE,QAAQ;SACnB,IAEA,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,CAAC,CACjB,oBAAC,iBAAiB,IAChB,GAAG,EAAE,EAAE,EACP,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,WAAW,EAAE,WAAW,GACxB,CACH,CAAC,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,iBAAiB,CAAA"}
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import React, { useEffect, useRef } from 'react';
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import { isAlive } from '@jbrowse/mobx-state-tree';
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import { autorun } from 'mobx';
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import { observer } from 'mobx-react';
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import { isAlive } from 'mobx-state-tree';
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import { renderMouseover } from './renderMSAMouseover';
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const MSAMouseoverCanvas = observer(function ({ model, }) {
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const ref = useRef(null);
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{"version":3,"file":"MSAMouseoverCanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSAMouseoverCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,OAAO,EAAE,MAAM,
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{"version":3,"file":"MSAMouseoverCanvas.js","sourceRoot":"","sources":["../../../src/components/msa/MSAMouseoverCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAEhD,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AAItD,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,GAGN;IACC,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,GAAG;YACR,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;oBACnB,eAAe,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAA;gBACjC,CAAC;YACH,CAAC,CAAC;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,OAAO,CACL,gCACE,GAAG,EAAE,GAAG,EACR,EAAE,EAAC,WAAW,EACd,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,CAAC;YACN,IAAI,EAAE,CAAC;YACP,KAAK;YACL,MAAM;YACN,MAAM,EAAE,IAAI;YACZ,aAAa,EAAE,MAAM;SACtB,GACD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
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import React, { useEffect, useRef, useState } from 'react';
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import { isAlive } from '@jbrowse/mobx-state-tree';
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import { autorun } from 'mobx';
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import { observer } from 'mobx-react';
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import { isAlive } from 'mobx-state-tree';
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import TreeCanvasBlock from './TreeCanvasBlock';
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import { padding } from './renderTreeCanvas';
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const TreeCanvas = observer(function ({ model }) {
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{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE1D,OAAO,EAAE,OAAO,EAAE,MAAM,
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+
{"version":3,"file":"TreeCanvas.js","sourceRoot":"","sources":["../../../src/components/tree/TreeCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAE1D,OAAO,EAAE,OAAO,EAAE,MAAM,0BAA0B,CAAA;AAClD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAAE,OAAO,EAAE,MAAM,oBAAoB,CAAA;AAI5C,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IACpD,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,MAAM,KAAK,GAAG,MAAM,CAAS,CAAC,CAAC,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACpE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IAEzD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,KAAiB;YAChC,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAE9B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;gBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;gBACxB,qBAAqB,CAAC,GAAG,EAAE;oBACzB,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;gBAC3B,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,KAAK,CAAC,eAAe,EAAE,CAAA;QACzB,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QACvC,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,OAAO,GAAG,GAAG,EAAE,GAAE,CAAC,CAAA;QAEtB,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,SAAS,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACvC,IAAI,SAAS,EAAE,CAAC;gBACd,uEAAuE;gBACvE,MAAM;gBACN,0EAA0E;gBAC1E,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;oBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;wBAC1B,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;gBACJ,CAAC;YACH,CAAC;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,IAAI,aAAa,EAAE,CAAC;gBAClB,gBAAgB,CAAC,KAAK,CAAC,CAAA;YACzB,CAAC;QACH,CAAC;QAED,IAAI,aAAa,EAAE,CAAC;YAClB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,GAAG,EAAE;gBACb,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;QACH,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,CAAC,CAAC,CAAA;IAE1B,+BAA+B;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,YAAY,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QAClD,OAAO,GAAG;YACR,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE;gBACX,IAAI,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;oBACnB,GAAG,CAAC,cAAc,EAAE,CAAA;oBACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,aAAa,EAAE,MAAM,CAAC,CAAA;oBAE1C,oDAAoD;oBACpD,MAAM,EAAE,UAAU,EAAE,MAAM,EAAE,SAAS,EAAE,eAAe,EAAE,GAAG,KAAK,CAAA;oBAChE,IAAI,UAAU,EAAE,CAAC;wBACf,MAAM,aAAa,GAAG,MAAM,CAAC,IAAI,CAC/B,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,KAAK,UAAU,CACtC,CAAA;wBACD,IAAI,aAAa,EAAE,CAAC;4BAClB,MAAM,CAAC,GAAG,aAAa,CAAC,CAAE,GAAG,OAAO,CAAA;4BACpC,GAAG,CAAC,SAAS,GAAG,qBAAqB,CAAA,CAAC,mCAAmC;4BACzE,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,GAAG,SAAS,GAAG,CAAC,EAAE,aAAa,EAAE,SAAS,CAAC,CAAA;wBAC9D,CAAC;oBACH,CAAC;oBAED,wDAAwD;oBACxD,IAAI,eAAe,EAAE,CAAC;wBACpB,GAAG,CAAC,SAAS,GAAG,qBAAqB,CAAA,CAAC,kCAAkC;wBACxE,KAAK,MAAM,cAAc,IAAI,eAAe,CAAC,eAAe,EAAE,CAAC;4BAC7D,MAAM,YAAY,GAAG,MAAM,CAAC,IAAI,CAC9B,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,KAAK,cAAc,CAC1C,CAAA;4BACD,IAAI,YAAY,EAAE,CAAC;gCACjB,MAAM,CAAC,GAAG,YAAY,CAAC,CAAE,GAAG,OAAO,CAAA;gCACnC,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,GAAG,SAAS,GAAG,CAAC,EAAE,aAAa,EAAE,SAAS,CAAC,CAAA;4BAC9D,CAAC;wBACH,CAAC;oBACH,CAAC;oBAED,4FAA4F;oBAC5F,MAAM,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;oBAClC,IACE,gBAAgB;wBAChB,gBAAgB,KAAK,UAAU;wBAC/B,CAAC,eAAe,EAAE,eAAe,CAAC,QAAQ,CAAC,gBAAgB,CAAC,EAC5D,CAAC;wBACD,kDAAkD;wBAClD,MAAM,YAAY,GAAG,MAAM,CAAC,IAAI,CAC9B,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,KAAK,gBAAgB,CAC5C,CAAA;wBACD,IAAI,YAAY,EAAE,CAAC;4BACjB,MAAM,CAAC,GAAG,YAAY,CAAC,CAAE,GAAG,OAAO,CAAA;4BACnC,GAAG,CAAC,SAAS,GAAG,qBAAqB,CAAA,CAAC,gCAAgC;4BACtE,GAAG,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,GAAG,SAAS,GAAG,CAAC,EAAE,aAAa,EAAE,SAAS,CAAC,CAAA;wBAC9D,CAAC;oBACH,CAAC;gBACH,CAAC;YACH,CAAC,CAAC;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAA;IAE3C,SAAS,SAAS,CAAC,KAAuB;QACxC,2DAA2D;QAC3D,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;QAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC;YAC/C,OAAM;QACR,CAAC;QAED,qCAAqC;QACrC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACvB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;QACxB,CAAC;IACH,CAAC;IAED,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,KAAK,CAAC,EAAE;YACjB,+DAA+D;YAC/D,uEAAuE;YACvE,aAAa;YACb,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,gBAAgB,CAAC,KAAK,CAAC,CAAA;QACzB,CAAC,EACD,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,MAAM;YACN,QAAQ,EAAE,UAAU;YACpB,KAAK,EAAE,SAAS,GAAG,OAAO;SAC3B;QAEA,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CACpB,oBAAC,eAAe,IAAC,GAAG,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,GAAI,CAC9D,CAAC;QACF,gCACE,GAAG,EAAE,YAAY,EACjB,KAAK,EAAE,aAAa,EACpB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI,EAAE,CAAC;gBACP,KAAK,EAAE,aAAa;gBACpB,MAAM;gBACN,MAAM,EAAE,IAAI;gBACZ,aAAa,EAAE,MAAM;aACtB,GACD,CACE,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
|
package/dist/index.d.ts
CHANGED
|
@@ -5,19 +5,19 @@
|
|
|
5
5
|
* data will not be persisted in saved session snapshots, it will be fetched
|
|
6
6
|
* from msaFilehandle at startup
|
|
7
7
|
*/
|
|
8
|
-
export declare function DataModelF(): import("mobx-state-tree").IModelType<{
|
|
8
|
+
export declare function DataModelF(): import("@jbrowse/mobx-state-tree").IModelType<{
|
|
9
9
|
/**
|
|
10
10
|
* #property
|
|
11
11
|
*/
|
|
12
|
-
tree: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
12
|
+
tree: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
13
13
|
/**
|
|
14
14
|
* #property
|
|
15
15
|
*/
|
|
16
|
-
msa: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
16
|
+
msa: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
17
17
|
/**
|
|
18
18
|
* #property
|
|
19
19
|
*/
|
|
20
|
-
treeMetadata: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
20
|
+
treeMetadata: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
|
|
21
21
|
}, {
|
|
22
22
|
/**
|
|
23
23
|
* #action
|
|
@@ -31,7 +31,7 @@ export declare function DataModelF(): import("mobx-state-tree").IModelType<{
|
|
|
31
31
|
* #action
|
|
32
32
|
*/
|
|
33
33
|
setTreeMetadata(treeMetadata?: string): void;
|
|
34
|
-
}, import("mobx-state-tree")._NotCustomized, {
|
|
34
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, {
|
|
35
35
|
tree: string | undefined;
|
|
36
36
|
msa: string | undefined;
|
|
37
37
|
treeMetadata: string | undefined;
|
package/dist/model/DataModel.js
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"DataModel.js","sourceRoot":"","sources":["../../src/model/DataModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"DataModel.js","sourceRoot":"","sources":["../../src/model/DataModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD;;;;;;GAMG;AACH,MAAM,UAAU,UAAU;IACxB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;WAEG;QACH,IAAI,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC/B;;WAEG;QACH,GAAG,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;QAC9B;;WAEG;QACH,YAAY,EAAE,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC;KACxC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD;;WAEG;QACH,MAAM,CAAC,GAAY;YACjB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QAChB,CAAC;QACD;;WAEG;QACH,eAAe,CAAC,YAAqB;YACnC,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;QAClC,CAAC;KACF,CAAC,CAAC;SACF,mBAAmB,CAAC,IAAI,CAAC,EAAE;QAC1B,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,YAAY,EAAE,GAAG,IAAI,CAAA;QACxC,MAAM,GAAG,GAAG,MAAM,CAAA;QAClB,OAAO;YACL,IAAI,EAAE,IAAI,IAAI,IAAI,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI;YAClD,GAAG,EAAE,GAAG,IAAI,GAAG,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG;YAC9C,YAAY,EACV,YAAY,IAAI,YAAY,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,YAAY;SACvE,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC"}
|
|
@@ -2,7 +2,7 @@ import type { DialogComponentType } from '@jbrowse/core/util';
|
|
|
2
2
|
/**
|
|
3
3
|
* #stateModel DialogQueueSessionMixin
|
|
4
4
|
*/
|
|
5
|
-
export declare function DialogQueueSessionMixin(): import("mobx-state-tree").IModelType<{}, {
|
|
5
|
+
export declare function DialogQueueSessionMixin(): import("@jbrowse/mobx-state-tree").IModelType<{}, {
|
|
6
6
|
queueOfDialogs: [DialogComponentType, any][];
|
|
7
7
|
} & {
|
|
8
8
|
/**
|
|
@@ -22,4 +22,4 @@ export declare function DialogQueueSessionMixin(): import("mobx-state-tree").IMo
|
|
|
22
22
|
* #action
|
|
23
23
|
*/
|
|
24
24
|
queueDialog(cb: (doneCallback: () => void) => [DialogComponentType, unknown]): void;
|
|
25
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
25
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"DialogQueue.js","sourceRoot":"","sources":["../../src/model/DialogQueue.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"DialogQueue.js","sourceRoot":"","sources":["../../src/model/DialogQueue.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAIhD;;GAEG;AACH,MAAM,UAAU,uBAAuB;IACrC,OAAO,KAAK;SACT,KAAK,CAAC,yBAAyB,EAAE,EAAE,CAAC;SACpC,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,cAAc,EAAE,EAAkC;KACnD,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,eAAe;YACjB,OAAO,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;QACD;;WAEG;QACH,IAAI,WAAW;YACb,OAAO,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;KACF,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,kBAAkB;YAChB,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QACpD,CAAC;QACD;;WAEG;QACH,WAAW,CACT,EAAgE;YAEhE,MAAM,CAAC,SAAS,EAAE,KAAK,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE;gBACjC,IAAI,CAAC,kBAAkB,EAAE,CAAA;YAC3B,CAAC,CAAC,CAAA;YACF,IAAI,CAAC,cAAc,GAAG,CAAC,GAAG,IAAI,CAAC,cAAc,EAAE,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC,CAAA;QACpE,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
package/dist/model/msaModel.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
export declare function MSAModelF(): import("mobx-state-tree").IModelType<{
|
|
2
|
-
bgColor: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3
|
-
colorSchemeName: import("mobx-state-tree").IType<string | undefined, string, string>;
|
|
1
|
+
export declare function MSAModelF(): import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2
|
+
bgColor: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
3
|
+
colorSchemeName: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
|
|
4
4
|
}, {
|
|
5
5
|
/**
|
|
6
6
|
* #action
|
|
@@ -11,4 +11,4 @@ export declare function MSAModelF(): import("mobx-state-tree").IModelType<{
|
|
|
11
11
|
* #action
|
|
12
12
|
*/
|
|
13
13
|
setBgColor(arg: boolean): void;
|
|
14
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
14
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
package/dist/model/msaModel.js
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,
|
|
1
|
+
{"version":3,"file":"msaModel.js","sourceRoot":"","sources":["../../src/model/msaModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD,OAAO,EAAE,cAAc,EAAE,sBAAsB,EAAE,MAAM,cAAc,CAAA;AAErE;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,UAAU,SAAS;IACvB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;;WAGG;QACH,OAAO,EAAE,cAAc;QAEvB;;;WAGG;QACH,eAAe,EAAE,sBAAsB;KACxC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;WAGG;QACH,kBAAkB,CAAC,IAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,IAAI,CAAA;QAC7B,CAAC;QAED;;WAEG;QACH,UAAU,CAAC,GAAY;YACrB,IAAI,CAAC,OAAO,GAAG,GAAG,CAAA;QACpB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
|
|
@@ -1,12 +1,12 @@
|
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1
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-
export declare function TreeModelF(): import("mobx-state-tree").IModelType<{
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2
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-
drawLabels: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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3
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-
labelsAlignRight: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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4
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-
treeAreaWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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5
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-
treeWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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6
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-
treeWidthMatchesArea: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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7
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-
showBranchLen: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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8
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-
drawTree: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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9
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-
drawNodeBubbles: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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1
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+
export declare function TreeModelF(): import("@jbrowse/mobx-state-tree").IModelType<{
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2
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+
drawLabels: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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3
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+
labelsAlignRight: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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4
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+
treeAreaWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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5
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+
treeWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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6
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+
treeWidthMatchesArea: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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7
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+
showBranchLen: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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8
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+
drawTree: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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9
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+
drawNodeBubbles: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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10
10
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}, {
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11
11
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/**
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12
12
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* #action
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@@ -43,4 +43,4 @@ export declare function TreeModelF(): import("mobx-state-tree").IModelType<{
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43
43
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* #action
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44
44
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*/
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45
45
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setDrawLabels(arg: boolean): void;
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46
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-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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46
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+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
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package/dist/model/treeModel.js
CHANGED
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@@ -1,4 +1,4 @@
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1
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-
import { types } from 'mobx-state-tree';
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1
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+
import { types } from '@jbrowse/mobx-state-tree';
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2
2
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import { defaultDrawLabels, defaultDrawNodeBubbles, defaultDrawTree, defaultLabelsAlignRight, defaultShowBranchLen, defaultTreeAreaWidth, defaultTreeWidth, defaultTreeWidthMatchesArea, } from '../constants';
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3
3
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/**
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4
4
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* #stateModel Tree
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"treeModel.js","sourceRoot":"","sources":["../../src/model/treeModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,
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1
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+
{"version":3,"file":"treeModel.js","sourceRoot":"","sources":["../../src/model/treeModel.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,0BAA0B,CAAA;AAEhD,OAAO,EACL,iBAAiB,EACjB,sBAAsB,EACtB,eAAe,EACf,uBAAuB,EACvB,oBAAoB,EACpB,oBAAoB,EACpB,gBAAgB,EAChB,2BAA2B,GAC5B,MAAM,cAAc,CAAA;AAErB;;GAEG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,UAAU,UAAU;IACxB,OAAO,KAAK;SACT,KAAK,CAAC;QACL;;WAEG;QACH,UAAU,EAAE,iBAAiB;QAC7B;;;WAGG;QACH,gBAAgB,EAAE,uBAAuB;QAEzC;;;WAGG;QACH,aAAa,EAAE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,oBAAoB,CAAC;QAEjE;;;WAGG;QACH,SAAS,EAAE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,gBAAgB,CAAC;QAEzD;;;WAGG;QACH,oBAAoB,EAAE,2BAA2B;QAEjD;;;;;WAKG;QACH,aAAa,EAAE,oBAAoB;QAEnC;;;WAGG;QACH,QAAQ,EAAE,eAAe;QAEzB;;;WAGG;QACH,eAAe,EAAE,sBAAsB;KACxC,CAAC;SACD,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;;WAGG;QACH,uBAAuB,CAAC,GAAY;YAClC,IAAI,CAAC,oBAAoB,GAAG,GAAG,CAAA;QACjC,CAAC;QAED;;;WAGG;QACH,gBAAgB,CAAC,CAAS;YACxB,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QACpC,CAAC;QACD;;;WAGG;QACH,YAAY,CAAC,CAAS;YACpB,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;QAChC,CAAC;QAED;;WAEG;QACH,mBAAmB,CAAC,GAAY;YAC9B,IAAI,CAAC,gBAAgB,GAAG,GAAG,CAAA;QAC7B,CAAC;QACD;;WAEG;QACH,WAAW,CAAC,GAAY;YACtB,IAAI,CAAC,QAAQ,GAAG,GAAG,CAAA;QACrB,CAAC;QAED;;WAEG;QACH,gBAAgB,CAAC,GAAY;YAC3B,IAAI,CAAC,aAAa,GAAG,GAAG,CAAA;QAC1B,CAAC;QAED;;WAEG;QACH,kBAAkB,CAAC,GAAY;YAC7B,IAAI,CAAC,eAAe,GAAG,GAAG,CAAA;QAC5B,CAAC;QACD;;WAEG;QACH,aAAa,CAAC,GAAY;YACxB,IAAI,CAAC,UAAU,GAAG,GAAG,CAAA;QACvB,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}
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