react-msaview 4.5.0 → 4.8.0

package/dist/rowCoordinateCalculations.test.js

@@ -1,6 +1,7 @@
 import { expect, test } from 'vitest';
-import { globalCoordToRowSpecificCoord, mouseOverCoordToGapRemovedCoord, mouseOverCoordToGlobalCoord, } from './rowCoordinateCalculations';
-test('with blanks at positions [2, 5, 8]', () => {
+import { globalColToSeqPos, globalColToVisibleCol, visibleColToGlobalCol, visibleColToSeqPos, } from './rowCoordinateCalculations';
+// Tests for visibleColToGlobalCol (visible → global)
+test('visibleColToGlobalCol with blanks at positions [2, 5, 8]', () => {
     const blanks = [2, 5, 8];
     [
         [0, 0],
@@ -12,10 +13,10 @@ test('with blanks at positions [2, 5, 8]', () => {
         [6, 9],
         [7, 10],
     ].forEach(r => {
-        expect(mouseOverCoordToGlobalCoord(blanks, r[0])).toBe(r[1]);
+        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
     });
 });
-test('with no blanks', () => {
+test('visibleColToGlobalCol with no blanks', () => {
     const blanks = [];
     [
         [0, 0],
@@ -23,10 +24,10 @@ test('with no blanks', () => {
         [5, 5],
         [10, 10],
     ].forEach(r => {
-        expect(mouseOverCoordToGlobalCoord(blanks, r[0])).toBe(r[1]);
+        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
     });
 });
-test('with consecutive blanks', () => {
+test('visibleColToGlobalCol with consecutive blanks', () => {
     const blanks = [2, 3, 4, 7, 8];
     [
         [0, 0],
@@ -36,10 +37,10 @@ test('with consecutive blanks', () => {
         [4, 9], // After position 3, skip 2 blanks (7,8)
         [5, 10],
     ].forEach(r => {
-        expect(mouseOverCoordToGlobalCoord(blanks, r[0])).toBe(r[1]);
+        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
     });
 });
-test('with blanks at the beginning', () => {
+test('visibleColToGlobalCol with blanks at the beginning', () => {
     const blanks = [1, 2, 5];
     [
         [0, 0],
@@ -48,10 +49,10 @@ test('with blanks at the beginning', () => {
         [3, 6], // After position 2, skip 1 blank (5)
         [4, 7],
     ].forEach(r => {
-        expect(mouseOverCoordToGlobalCoord(blanks, r[0])).toBe(r[1]);
+        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
     });
 });
-test('with position exceeding blanks array', () => {
+test('visibleColToGlobalCol with position exceeding blanks array', () => {
     const blanks = [2, 5];
     [
         [0, 0],
@@ -61,64 +62,163 @@ test('with position exceeding blanks array', () => {
         [4, 6], // After position 3, skip 1 blank (5)
         [10, 12], // Far beyond blanks array
     ].forEach(r => {
-        expect(mouseOverCoordToGlobalCoord(blanks, r[0])).toBe(r[1]);
+        expect(visibleColToGlobalCol(blanks, r[0])).toBe(r[1]);
     });
 });
-test('with gaps in sequence', () => {
+// Tests for globalColToVisibleCol (global → visible)
+test('globalColToVisibleCol with blanks at positions [2, 5, 8]', () => {
+    const blanks = [2, 5, 8];
+    // Inverse of visibleColToGlobalCol
+    expect(globalColToVisibleCol(blanks, 0)).toBe(0);
+    expect(globalColToVisibleCol(blanks, 1)).toBe(1);
+    expect(globalColToVisibleCol(blanks, 2)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 3)).toBe(2);
+    expect(globalColToVisibleCol(blanks, 4)).toBe(3);
+    expect(globalColToVisibleCol(blanks, 5)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 6)).toBe(4);
+    expect(globalColToVisibleCol(blanks, 7)).toBe(5);
+    expect(globalColToVisibleCol(blanks, 8)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 9)).toBe(6);
+    expect(globalColToVisibleCol(blanks, 10)).toBe(7);
+});
+test('globalColToVisibleCol with no blanks', () => {
+    const blanks = [];
+    expect(globalColToVisibleCol(blanks, 0)).toBe(0);
+    expect(globalColToVisibleCol(blanks, 5)).toBe(5);
+    expect(globalColToVisibleCol(blanks, 10)).toBe(10);
+});
+test('globalColToVisibleCol with consecutive blanks', () => {
+    const blanks = [2, 3, 4, 7, 8];
+    expect(globalColToVisibleCol(blanks, 0)).toBe(0);
+    expect(globalColToVisibleCol(blanks, 1)).toBe(1);
+    expect(globalColToVisibleCol(blanks, 2)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 3)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 4)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 5)).toBe(2);
+    expect(globalColToVisibleCol(blanks, 6)).toBe(3);
+    expect(globalColToVisibleCol(blanks, 7)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 8)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 9)).toBe(4);
+    expect(globalColToVisibleCol(blanks, 10)).toBe(5);
+});
+// Tests for globalColToSeqPos (global column → sequence position)
+test('globalColToSeqPos with gaps in sequence', () => {
     const sequence = 'AC-GT-A';
-    expect(globalCoordToRowSpecificCoord(sequence, 0)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 1)).toBe(1);
-    expect(globalCoordToRowSpecificCoord(sequence, 2)).toBe(2);
+    expect(globalColToSeqPos(sequence, 0)).toBe(0);
+    expect(globalColToSeqPos(sequence, 1)).toBe(1);
+    expect(globalColToSeqPos(sequence, 2)).toBe(2);
     // Position 2 is a gap, so count before it is 2
-    expect(globalCoordToRowSpecificCoord(sequence, 3)).toBe(2);
-    expect(globalCoordToRowSpecificCoord(sequence, 4)).toBe(3);
-    expect(globalCoordToRowSpecificCoord(sequence, 5)).toBe(4);
+    expect(globalColToSeqPos(sequence, 3)).toBe(2);
+    expect(globalColToSeqPos(sequence, 4)).toBe(3);
+    expect(globalColToSeqPos(sequence, 5)).toBe(4);
     // Position 5 is a gap, so count before it is 4
-    expect(globalCoordToRowSpecificCoord(sequence, 6)).toBe(4);
+    expect(globalColToSeqPos(sequence, 6)).toBe(4);
 });
-test('with mixed gap characters (- and .)', () => {
+test('globalColToSeqPos with mixed gap characters (- and .)', () => {
     const sequence = 'AC.GT-A';
-    expect(globalCoordToRowSpecificCoord(sequence, 0)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 1)).toBe(1);
+    expect(globalColToSeqPos(sequence, 0)).toBe(0);
+    expect(globalColToSeqPos(sequence, 1)).toBe(1);
     // Position 2 is a gap (.), so count before it is 2
-    expect(globalCoordToRowSpecificCoord(sequence, 2)).toBe(2);
-    expect(globalCoordToRowSpecificCoord(sequence, 3)).toBe(2);
-    expect(globalCoordToRowSpecificCoord(sequence, 4)).toBe(3);
+    expect(globalColToSeqPos(sequence, 2)).toBe(2);
+    expect(globalColToSeqPos(sequence, 3)).toBe(2);
+    expect(globalColToSeqPos(sequence, 4)).toBe(3);
     // Position 5 is a gap (-), so count before it is 4
-    expect(globalCoordToRowSpecificCoord(sequence, 5)).toBe(4);
-    expect(globalCoordToRowSpecificCoord(sequence, 6)).toBe(4);
+    expect(globalColToSeqPos(sequence, 5)).toBe(4);
+    expect(globalColToSeqPos(sequence, 6)).toBe(4);
 });
-test('with no gaps in sequence', () => {
+test('globalColToSeqPos with no gaps in sequence', () => {
     const sequence = 'ACGTA';
-    expect(globalCoordToRowSpecificCoord(sequence, 0)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 1)).toBe(1);
-    expect(globalCoordToRowSpecificCoord(sequence, 2)).toBe(2);
-    expect(globalCoordToRowSpecificCoord(sequence, 3)).toBe(3);
-    expect(globalCoordToRowSpecificCoord(sequence, 4)).toBe(4);
+    expect(globalColToSeqPos(sequence, 0)).toBe(0);
+    expect(globalColToSeqPos(sequence, 1)).toBe(1);
+    expect(globalColToSeqPos(sequence, 2)).toBe(2);
+    expect(globalColToSeqPos(sequence, 3)).toBe(3);
+    expect(globalColToSeqPos(sequence, 4)).toBe(4);
 });
-test('with all gaps in sequence', () => {
+test('globalColToSeqPos with all gaps in sequence', () => {
     const sequence = '-----';
-    expect(globalCoordToRowSpecificCoord(sequence, 0)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 1)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 2)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 3)).toBe(0);
-    expect(globalCoordToRowSpecificCoord(sequence, 4)).toBe(0);
+    expect(globalColToSeqPos(sequence, 0)).toBe(0);
+    expect(globalColToSeqPos(sequence, 1)).toBe(0);
+    expect(globalColToSeqPos(sequence, 2)).toBe(0);
+    expect(globalColToSeqPos(sequence, 3)).toBe(0);
+    expect(globalColToSeqPos(sequence, 4)).toBe(0);
 });
-test('with position exceeding sequence length', () => {
+test('globalColToSeqPos with position exceeding sequence length', () => {
     const sequence = 'AC-GT';
-    expect(globalCoordToRowSpecificCoord(sequence, 10)).toBe(4);
+    expect(globalColToSeqPos(sequence, 10)).toBe(4);
 });
-test('mouseOverCoordToGapRemovedCoord', () => {
+// Tests for visibleColToSeqPos (visible column → sequence position)
+test('visibleColToSeqPos returns sequence position or undefined for gaps', () => {
     const seq = 'AC--GT--CT';
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 0, blanks: [] })).toBe(0);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 1, blanks: [] })).toBe(1);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 2, blanks: [] })).toBe(undefined);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 3, blanks: [] })).toBe(undefined);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 4, blanks: [] })).toBe(2);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 5, blanks: [] })).toBe(3);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 6, blanks: [] })).toBe(undefined);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 7, blanks: [] })).toBe(undefined);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 8, blanks: [] })).toBe(4);
-    expect(mouseOverCoordToGapRemovedCoord({ seq, position: 9, blanks: [] })).toBe(5);
+    expect(visibleColToSeqPos({ seq, visibleCol: 0, blanks: [] })).toBe(0);
+    expect(visibleColToSeqPos({ seq, visibleCol: 1, blanks: [] })).toBe(1);
+    expect(visibleColToSeqPos({ seq, visibleCol: 2, blanks: [] })).toBe(undefined);
+    expect(visibleColToSeqPos({ seq, visibleCol: 3, blanks: [] })).toBe(undefined);
+    expect(visibleColToSeqPos({ seq, visibleCol: 4, blanks: [] })).toBe(2);
+    expect(visibleColToSeqPos({ seq, visibleCol: 5, blanks: [] })).toBe(3);
+    expect(visibleColToSeqPos({ seq, visibleCol: 6, blanks: [] })).toBe(undefined);
+    expect(visibleColToSeqPos({ seq, visibleCol: 7, blanks: [] })).toBe(undefined);
+    expect(visibleColToSeqPos({ seq, visibleCol: 8, blanks: [] })).toBe(4);
+    expect(visibleColToSeqPos({ seq, visibleCol: 9, blanks: [] })).toBe(5);
+});
+// Round-trip tests: visible → global → visible should be identity for valid columns
+test('round-trip: visibleColToGlobalCol and globalColToVisibleCol are inverses', () => {
+    const blanks = [2, 5, 8];
+    // For each visible column, going to global and back should return the same value
+    for (let visibleCol = 0; visibleCol < 10; visibleCol++) {
+        const globalCol = visibleColToGlobalCol(blanks, visibleCol);
+        const backToVisible = globalColToVisibleCol(blanks, globalCol);
+        expect(backToVisible).toBe(visibleCol);
+    }
+});
+test('round-trip: globalColToVisibleCol and visibleColToGlobalCol for non-hidden columns', () => {
+    const blanks = [2, 5, 8];
+    // For each global column that is NOT hidden, going to visible and back should return the same value
+    for (let globalCol = 0; globalCol < 15; globalCol++) {
+        const visibleCol = globalColToVisibleCol(blanks, globalCol);
+        if (visibleCol !== undefined) {
+            const backToGlobal = visibleColToGlobalCol(blanks, visibleCol);
+            expect(backToGlobal).toBe(globalCol);
+        }
+    }
+});
+// Edge case: blanks at position 0
+test('globalColToVisibleCol with blank at position 0', () => {
+    const blanks = [0, 1, 5];
+    expect(globalColToVisibleCol(blanks, 0)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 1)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 2)).toBe(0); // First visible column
+    expect(globalColToVisibleCol(blanks, 3)).toBe(1);
+    expect(globalColToVisibleCol(blanks, 4)).toBe(2);
+    expect(globalColToVisibleCol(blanks, 5)).toBe(undefined); // Hidden
+    expect(globalColToVisibleCol(blanks, 6)).toBe(3);
+});
+test('visibleColToGlobalCol with blank at position 0', () => {
+    const blanks = [0, 1, 5];
+    expect(visibleColToGlobalCol(blanks, 0)).toBe(2); // Skips 0, 1
+    expect(visibleColToGlobalCol(blanks, 1)).toBe(3);
+    expect(visibleColToGlobalCol(blanks, 2)).toBe(4);
+    expect(visibleColToGlobalCol(blanks, 3)).toBe(6); // Skips 5
+});
+// Edge case: all columns before a position are blanks
+test('globalColToVisibleCol with many leading blanks', () => {
+    const blanks = [0, 1, 2, 3, 4];
+    expect(globalColToVisibleCol(blanks, 0)).toBe(undefined);
+    expect(globalColToVisibleCol(blanks, 4)).toBe(undefined);
+    expect(globalColToVisibleCol(blanks, 5)).toBe(0); // First visible
+    expect(globalColToVisibleCol(blanks, 6)).toBe(1);
+    expect(globalColToVisibleCol(blanks, 10)).toBe(5);
+});
+// Test visibleColToSeqPos with blanks (combined gap hiding and row gaps)
+test('visibleColToSeqPos with both blanks and row gaps', () => {
+    // Sequence: A-C-G (global cols 0,1,2,3,4)
+    // If blanks = [1, 3], visible sequence becomes: A C G (visible cols 0,1,2)
+    const seq = 'A-C-G';
+    const blanks = [1, 3];
+    // Visible col 0 → global col 0 → 'A' → seqPos 0
+    expect(visibleColToSeqPos({ seq, visibleCol: 0, blanks })).toBe(0);
+    // Visible col 1 → global col 2 → 'C' → seqPos 1
+    expect(visibleColToSeqPos({ seq, visibleCol: 1, blanks })).toBe(1);
+    // Visible col 2 → global col 4 → 'G' → seqPos 2
+    expect(visibleColToSeqPos({ seq, visibleCol: 2, blanks })).toBe(2);
 });
 //# sourceMappingURL=rowCoordinateCalculations.test.js.map

package/dist/rowCoordinateCalculations.test.js.map

@@ -1 +1 @@
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package/dist/seqPosToGlobalCol.d.ts

@@ -0,0 +1,19 @@
+/**
+ * Convert a sequence position (ungapped, 0-based) to a global column index.
+ * This finds the global column that contains the Nth non-gap character.
+ *
+ * @param row - The row's sequence string (including gaps)
+ * @param seqPos - The sequence position (0-based count of non-gap characters)
+ * @returns The global column index containing the seqPos-th non-gap character
+ *
+ * @example
+ * // Row: "A-TG-C" (A at 0, T at 2, G at 3, C at 5)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 0 }) // → 0 (A)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 1 }) // → 2 (T)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 2 }) // → 3 (G)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 3 }) // → 5 (C)
+ */
+export declare function seqPosToGlobalCol({ row, seqPos, }: {
+    row: string;
+    seqPos: number;
+}): number;

package/dist/seqPosToGlobalCol.js

@@ -0,0 +1,34 @@
+import { isBlank } from './util';
+/**
+ * Convert a sequence position (ungapped, 0-based) to a global column index.
+ * This finds the global column that contains the Nth non-gap character.
+ *
+ * @param row - The row's sequence string (including gaps)
+ * @param seqPos - The sequence position (0-based count of non-gap characters)
+ * @returns The global column index containing the seqPos-th non-gap character
+ *
+ * @example
+ * // Row: "A-TG-C" (A at 0, T at 2, G at 3, C at 5)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 0 }) // → 0 (A)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 1 }) // → 2 (T)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 2 }) // → 3 (G)
+ * seqPosToGlobalCol({ row: "A-TG-C", seqPos: 3 }) // → 5 (C)
+ */
+export function seqPosToGlobalCol({ row, seqPos, }) {
+    let nonGapCount = 0;
+    let globalCol = 0;
+    // Find the seqPos-th non-gap character
+    while (globalCol < row.length) {
+        if (!isBlank(row[globalCol])) {
+            if (nonGapCount === seqPos) {
+                return globalCol;
+            }
+            nonGapCount++;
+        }
+        globalCol++;
+    }
+    // If seqPos is 0 and we didn't find any non-gap character, return 0
+    // Otherwise return globalCol (which is row.length at this point)
+    return seqPos === 0 ? 0 : globalCol;
+}
+//# sourceMappingURL=seqPosToGlobalCol.js.map

package/dist/seqPosToGlobalCol.js.map

@@ -0,0 +1 @@
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package/dist/seqPosToGlobalCol.test.js

@@ -0,0 +1,60 @@
+import { describe, expect, test } from 'vitest';
+import { seqPosToGlobalCol } from './seqPosToGlobalCol';
+describe('seqPosToGlobalCol', () => {
+    test('converts sequence position to global column with no gaps', () => {
+        const row = 'ATGCATGC';
+        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0);
+        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(3);
+        expect(seqPosToGlobalCol({ row, seqPos: 7 })).toBe(7);
+        expect(seqPosToGlobalCol({ row, seqPos: 8 })).toBe(8); // Past end
+    });
+    test('converts sequence position to global column with gaps', () => {
+        const row = 'A-TG-CA-TGC';
+        // Global: A(0) -(1) T(2) G(3) -(4) C(5) A(6) -(7) T(8) G(9) C(10)
+        // SeqPos: A(0)      T(1) G(2)      C(3) A(4)      T(5) G(6) C(7)
+        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0); // A
+        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(2); // T
+        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(3); // G
+        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(5); // C
+        expect(seqPosToGlobalCol({ row, seqPos: 4 })).toBe(6); // A
+        expect(seqPosToGlobalCol({ row, seqPos: 5 })).toBe(8); // T
+        expect(seqPosToGlobalCol({ row, seqPos: 6 })).toBe(9); // G
+        expect(seqPosToGlobalCol({ row, seqPos: 7 })).toBe(10); // C
+        expect(seqPosToGlobalCol({ row, seqPos: 8 })).toBe(11); // Past end
+    });
+    test('handles empty row', () => {
+        expect(seqPosToGlobalCol({ row: '', seqPos: 0 })).toBe(0);
+    });
+    test('handles row with only gaps', () => {
+        const row = '---..--';
+        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0);
+        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(7); // Past end
+    });
+    test('handles mixed gap characters (- and .)', () => {
+        const row = 'A-.G-C.';
+        // Global: A(0) -(1) .(2) G(3) -(4) C(5) .(6)
+        // SeqPos: A(0)           G(1)      C(2)
+        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0); // A
+        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(3); // G
+        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(5); // C
+        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(7); // Past end
+    });
+    test('handles leading gaps', () => {
+        const row = '--ACG';
+        // Global: -(0) -(1) A(2) C(3) G(4)
+        // SeqPos:           A(0) C(1) G(2)
+        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(2); // A
+        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(3); // C
+        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(4); // G
+    });
+    test('handles trailing gaps', () => {
+        const row = 'ACG--';
+        // Global: A(0) C(1) G(2) -(3) -(4)
+        // SeqPos: A(0) C(1) G(2)
+        expect(seqPosToGlobalCol({ row, seqPos: 0 })).toBe(0); // A
+        expect(seqPosToGlobalCol({ row, seqPos: 1 })).toBe(1); // C
+        expect(seqPosToGlobalCol({ row, seqPos: 2 })).toBe(2); // G
+        expect(seqPosToGlobalCol({ row, seqPos: 3 })).toBe(5); // Past end
+    });
+});
+//# sourceMappingURL=seqPosToGlobalCol.test.js.map

package/dist/seqPosToGlobalCol.test.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"seqPosToGlobalCol.test.js","sourceRoot":"","sources":["../src/seqPosToGlobalCol.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAE/C,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAA;AAEvD,QAAQ,CAAC,mBAAmB,EAAE,GAAG,EAAE;IACjC,IAAI,CAAC,0DAA0D,EAAE,GAAG,EAAE;QACpE,MAAM,GAAG,GAAG,UAAU,CAAA;QACtB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,uDAAuD,EAAE,GAAG,EAAE;QACjE,MAAM,GAAG,GAAG,aAAa,CAAA;QACzB,kEAAkE;QAClE,iEAAiE;QAEjE,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA,CAAC,IAAI;QAC3D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA,CAAC,WAAW;IACpE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,mBAAmB,EAAE,GAAG,EAAE;QAC7B,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;IAC3D,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,4BAA4B,EAAE,GAAG,EAAE;QACtC,MAAM,GAAG,GAAG,SAAS,CAAA;QACrB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,wCAAwC,EAAE,GAAG,EAAE;QAClD,MAAM,GAAG,GAAG,SAAS,CAAA;QACrB,6CAA6C;QAC7C,wCAAwC;QAExC,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,sBAAsB,EAAE,GAAG,EAAE;QAChC,MAAM,GAAG,GAAG,OAAO,CAAA;QACnB,mCAAmC;QACnC,mCAAmC;QAEnC,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;IAC5D,CAAC,CAAC,CAAA;IAEF,IAAI,CAAC,uBAAuB,EAAE,GAAG,EAAE;QACjC,MAAM,GAAG,GAAG,OAAO,CAAA;QACnB,mCAAmC;QACnC,yBAAyB;QAEzB,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,IAAI;QAC1D,MAAM,CAAC,iBAAiB,CAAC,EAAE,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA,CAAC,WAAW;IACnE,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}

package/dist/util.d.ts

@@ -1,10 +1,9 @@
-import type { Node, NodeWithIds } from './types';
+import type { NodeWithIds } from './types';
 import type { Theme } from '@mui/material';
 import type { HierarchyNode } from 'd3-hierarchy';
 export declare function transform<T>(obj: Record<string, T>, cb: (arg0: [string, T]) => [string, T]): {
     [k: string]: T;
 };
-export declare function generateNodeIds(tree: Node, parent?: string, depth?: number): NodeWithIds;
 export declare function colorContrast(colorScheme: Record<string, string>, theme: Theme): {
     [k: string]: string;
 };

package/dist/util.js

@@ -5,15 +5,6 @@ extend([namesPlugin]);
 export function transform(obj, cb) {
     return Object.fromEntries(Object.entries(obj).map(cb));
 }
-export function generateNodeIds(tree, parent = 'node', depth = 0) {
-    const id = `${parent}-${depth}`;
-    return {
-        ...tree,
-        id,
-        name: tree.name || id,
-        children: tree.children?.map((b, i) => generateNodeIds(b, `${id}-${i}`, depth + 1)) || [],
-    };
-}
 export function colorContrast(colorScheme, theme) {
     return transform(colorScheme, ([letter, color]) => [
         letter,

package/dist/util.js.map

@@ -1 +1 @@
-{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAC9C,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAM9B,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;AAErB,MAAM,UAAU,SAAS,CACvB,GAAsB,EACtB,EAAsC;IAEtC,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,UAAU,eAAe,CAC7B,IAAU,EACV,MAAM,GAAG,MAAM,EACf,KAAK,GAAG,CAAC;IAET,MAAM,EAAE,GAAG,GAAG,MAAM,IAAI,KAAK,EAAE,CAAA;IAE/B,OAAO;QACL,GAAG,IAAI;QACP,EAAE;QACF,IAAI,EAAE,IAAI,CAAC,IAAI,IAAI,EAAE;QACrB,QAAQ,EACN,IAAI,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAC1B,eAAe,CAAC,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,EAAE,EAAE,KAAK,GAAG,CAAC,CAAC,CAC5C,IAAI,EAAE;KACV,CAAA;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,WAAmC,EACnC,KAAY;IAEZ,OAAO,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;QACjD,MAAM;QACN,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;KACrD,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,MAAgB,EAAE,GAAsB;IACjE,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,OAAO,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;IACrD,CAAC;IACD,MAAM,MAAM,GAAG,EAAE,CAAA;IACjB,IAAI,OAAO,GAAG,CAAC,CAAA;IACf,KAAK,MAAM,QAAQ,IAAI,MAAM,EAAE,CAAC;QAC9B,IAAI,QAAQ,GAAG,OAAO,EAAE,CAAC;YACvB,MAAM,CAAC,IAAI,CACT,OAAO,GAAG,KAAK,QAAQ;gBACrB,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC;gBAC9B,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAC1C,CAAA;QACH,CAAC;QACD,OAAO,GAAG,QAAQ,GAAG,CAAC,CAAA;IACxB,CAAC;IACD,IAAI,OAAO,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;QACzB,MAAM,CAAC,IAAI,CACT,OAAO,GAAG,KAAK,QAAQ;YACrB,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;YACpB,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAChC,CAAA;IACH,CAAC;IACD,OAAO,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;AACxB,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CACzB,CAA6B,EAC7B,EAAU,EACV,CAAS;IAET,mBAAmB;IACnB,CAAC,CAAC,GAAG,GAAG,CAAC,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;IAEnD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;YACrB,WAAW,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;QACvB,CAAC,CAAC,CAAA;IACJ,CAAC;AACH,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,SAAS,CAAC,CAA6B;IACrD,OAAO,CACL,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC1E,CAAA;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,CAA6B;IACpD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,mBAAmB;QACnB,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,QAAQ,CAAA;QACxB,mBAAmB;QACnB,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAA;IACnB,CAAC;AACH,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAiC;IACnD,OAAO,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,CAAA;AACxB,CAAC;AAED,8CAA8C;AAC9C,oCAAoC;AACpC,MAAM,UAAU,OAAO,CAAC,CAAU;IAChC,OAAO,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,GAAG,CAAA;AAC/B,CAAC"}
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAC9C,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAM9B,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;AAErB,MAAM,UAAU,SAAS,CACvB,GAAsB,EACtB,EAAsC;IAEtC,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;AACxD,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,WAAmC,EACnC,KAAY;IAEZ,OAAO,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;QACjD,MAAM;QACN,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;KACrD,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,MAAgB,EAAE,GAAsB;IACjE,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,OAAO,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;IACrD,CAAC;IACD,MAAM,MAAM,GAAG,EAAE,CAAA;IACjB,IAAI,OAAO,GAAG,CAAC,CAAA;IACf,KAAK,MAAM,QAAQ,IAAI,MAAM,EAAE,CAAC;QAC9B,IAAI,QAAQ,GAAG,OAAO,EAAE,CAAC;YACvB,MAAM,CAAC,IAAI,CACT,OAAO,GAAG,KAAK,QAAQ;gBACrB,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC;gBAC9B,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAC1C,CAAA;QACH,CAAC;QACD,OAAO,GAAG,QAAQ,GAAG,CAAC,CAAA;IACxB,CAAC;IACD,IAAI,OAAO,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC;QACzB,MAAM,CAAC,IAAI,CACT,OAAO,GAAG,KAAK,QAAQ;YACrB,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;YACpB,CAAC,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAChC,CAAA;IACH,CAAC;IACD,OAAO,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;AACxB,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CACzB,CAA6B,EAC7B,EAAU,EACV,CAAS;IAET,mBAAmB;IACnB,CAAC,CAAC,GAAG,GAAG,CAAC,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;IAEnD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;YACrB,WAAW,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;QACvB,CAAC,CAAC,CAAA;IACJ,CAAC;AACH,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,SAAS,CAAC,CAA6B;IACrD,OAAO,CACL,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC1E,CAAA;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,CAA6B;IACpD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,mBAAmB;QACnB,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,QAAQ,CAAA;QACxB,mBAAmB;QACnB,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAA;IACnB,CAAC;AACH,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAiC;IACnD,OAAO,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,CAAA;AACxB,CAAC;AAED,8CAA8C;AAC9C,oCAAoC;AACpC,MAAM,UAAU,OAAO,CAAC,CAAU;IAChC,OAAO,CAAC,KAAK,GAAG,IAAI,CAAC,KAAK,GAAG,CAAA;AAC/B,CAAC"}

package/dist/version.d.ts

@@ -1 +1 @@
-export declare const version = "4.4.7";
+export declare const version = "4.7.0";

package/dist/version.js

@@ -1,2 +1,2 @@
-export const version = '4.4.7';
+export const version = '4.7.0';
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "react-msaview",
   "author": "Colin",
-  "version": "4.5.0",
+  "version": "4.8.0",
   "license": "MIT",
   "repository": {
     "type": "git",
@@ -20,17 +20,17 @@
   },
   "scripts": {
     "clean": "rimraf dist",
-    "watch": "yarn build:esm --watch",
+    "watch": "pnpm build:esm --watch",
     "format": "prettier --write .",
-    "prebuild": "yarn clean",
+    "prebuild": "pnpm clean",
     "preversion": "node output-version.js > src/version.ts && git add -A src && git commit -m '[skip ci] Bump version.ts'",
     "build:esm": "tsc",
     "build:bundle": "webpack",
-    "build": "yarn build:esm && yarn build:bundle",
-    "prepack": "yarn build",
+    "build": "pnpm build:esm && pnpm build:bundle",
+    "prepack": "pnpm build",
     "postversion": "git push --follow-tags",
     "statedocs": "rm -rf apidocs && mkdir apidocs && node --experimental-strip-types docgen/generateStateModelDocs.ts",
-    "poststatedocs": "yarn format",
+    "poststatedocs": "pnpm format",
     "test": "vitest"
   },
   "peerDependencies": {
@@ -46,16 +46,14 @@
   "dependencies": {
     "@mui/icons-material": "^7.0.1",
     "@mui/material": "^7.0.1",
-    "clustal-js": "^2.0.0",
+    "@react-msaview/parsers": "workspace:*",
     "colord": "^2.9.3",
     "copy-to-clipboard": "^3.3.1",
     "d3-array": "^3.2.3",
     "d3-hierarchy": "^3.1.2",
-    "emf-js": "^2.0.0",
     "file-saver": "^2.0.5",
     "flatbush": "^4.4.0",
     "pako": "^2.1.0",
-    "stockholm-js": "^1.0.10",
     "svgcanvas": "^2.5.0"
   }
 }

package/src/components/header/HeaderInfoArea.tsx

@@ -19,11 +19,8 @@ const HeaderInfoArea = observer(function ({ model }: { model: MsaViewModel }) {
   return mouseOverRowName && mouseCol !== undefined ? (
     <Typography className={classes.margin}>
       {mouseOverRowName}:
-      {model.mouseOverCoordToGapRemovedRowCoordOneBased(
-        mouseOverRowName,
-        mouseCol,
-      )}{' '}
-      ({model.mouseOverCoordToRowLetter(mouseOverRowName, mouseCol)})
+      {model.visibleColToSeqPosOneBased(mouseOverRowName, mouseCol)} (
+      {model.visibleColToRowLetter(mouseOverRowName, mouseCol)})
     </Typography>
   ) : null
 })

package/src/components/import/ImportForm.tsx

@@ -13,6 +13,7 @@ import type { FileLocation } from '@jbrowse/core/util/types'
 const ImportForm = observer(function ({ model }: { model: MsaViewModel }) {
   const [msaFile, setMsaFile] = useState<FileLocation>()
   const [treeFile, setTreeFile] = useState<FileLocation>()
+  const [gffFile, setGffFile] = useState<FileLocation>()
   const { error } = model
 
   return (
@@ -48,6 +49,10 @@ const ImportForm = observer(function ({ model }: { model: MsaViewModel }) {
             <Typography>Tree file or URL</Typography>
             <FileSelector location={treeFile} setLocation={setTreeFile} />
           </div>
+          <div>
+            <Typography>InterProScan GFF file or URL (optional)</Typography>
+            <FileSelector location={gffFile} setLocation={setGffFile} />
+          </div>
         </div>
         <div>
           <Button
@@ -55,7 +60,7 @@ const ImportForm = observer(function ({ model }: { model: MsaViewModel }) {
               // eslint-disable-next-line @typescript-eslint/no-floating-promises
               ;(async () => {
                 try {
-                  await load(model, msaFile, treeFile)
+                  await load(model, msaFile, treeFile, gffFile)
                 } catch (e) {
                   console.error(e)
                   model.setError(e)

package/src/components/import/util.ts

@@ -5,6 +5,7 @@ export async function load(
   model: MsaViewModel,
   msaFile?: FileLocation,
   treeFile?: FileLocation,
+  gffFile?: FileLocation,
 ) {
   model.setError(undefined)
   if (msaFile) {
@@ -13,4 +14,7 @@ export async function load(
   if (treeFile) {
     model.setTreeFilehandle(treeFile)
   }
+  if (gffFile) {
+    model.setGFFFilehandle(gffFile)
+  }
 }

package/src/components/msa/renderBoxFeatureCanvasBlock.ts

@@ -69,8 +69,13 @@ function drawTiles({
     if (entry) {
       for (let j = 0, l2 = entry.length; j < l2; j++) {
         const { start, end, accession } = entry[j]!
-        const m1 = model.seqCoordToRowSpecificGlobalCoord(name, start - 1)
-        const m2 = model.seqCoordToRowSpecificGlobalCoord(name, end)
+        // Convert sequence positions to visible column positions
+        // seqPos is 1-based from InterPro, so subtract 1 for 0-based
+        const m1 = model.seqPosToVisibleCol(name, start - 1)
+        const m2 = model.seqPosToVisibleCol(name, end)
+        if (m1 === undefined || m2 === undefined) {
+          continue // Skip if either position is hidden
+        }
         const x = m1 * colWidth
         ctx.fillStyle = fillPalette[accession]!
         ctx.strokeStyle = strokePalette[accession]!