react-msaview 4.4.6 → 4.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (122) hide show
  1. package/bundle/index.js +9 -9
  2. package/bundle/index.js.LICENSE.txt +8 -8
  3. package/bundle/index.js.map +1 -1
  4. package/dist/colorSchemes.d.ts +0 -6
  5. package/dist/colorSchemes.js +1 -119
  6. package/dist/colorSchemes.js.map +1 -1
  7. package/dist/components/ConservationTrack.d.ts +8 -0
  8. package/dist/components/ConservationTrack.js +54 -0
  9. package/dist/components/ConservationTrack.js.map +1 -0
  10. package/dist/components/Loading.js +14 -2
  11. package/dist/components/Loading.js.map +1 -1
  12. package/dist/components/MSAView.js +36 -0
  13. package/dist/components/MSAView.js.map +1 -1
  14. package/dist/components/SequenceTextArea.js +3 -2
  15. package/dist/components/SequenceTextArea.js.map +1 -1
  16. package/dist/components/TextTrack.d.ts +3 -3
  17. package/dist/components/TextTrack.js +4 -1
  18. package/dist/components/TextTrack.js.map +1 -1
  19. package/dist/components/Track.js +21 -8
  20. package/dist/components/Track.js.map +1 -1
  21. package/dist/components/dialogs/ExportSVGDialog.js +19 -3
  22. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  23. package/dist/components/header/GappynessSlider.d.ts +6 -0
  24. package/dist/components/header/GappynessSlider.js +19 -0
  25. package/dist/components/header/GappynessSlider.js.map +1 -0
  26. package/dist/components/header/Header.js +3 -1
  27. package/dist/components/header/Header.js.map +1 -1
  28. package/dist/components/header/HeaderMenu.js +30 -14
  29. package/dist/components/header/HeaderMenu.js.map +1 -1
  30. package/dist/components/minimap/MinimapSVG.js +4 -3
  31. package/dist/components/minimap/MinimapSVG.js.map +1 -1
  32. package/dist/components/msa/MSACanvasBlock.js +56 -42
  33. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  34. package/dist/components/msa/renderMSABlock.js +71 -26
  35. package/dist/components/msa/renderMSABlock.js.map +1 -1
  36. package/dist/components/msa/renderMSAMouseover.js +8 -1
  37. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  38. package/dist/components/tracks/renderTracksSvg.d.ts +29 -0
  39. package/dist/components/tracks/renderTracksSvg.js +83 -0
  40. package/dist/components/tracks/renderTracksSvg.js.map +1 -0
  41. package/dist/components/tree/TreeNodeMenu.js +2 -2
  42. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  43. package/dist/components/tree/renderTreeCanvas.d.ts +0 -1
  44. package/dist/components/tree/renderTreeCanvas.js +23 -24
  45. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  46. package/dist/constants.d.ts +22 -0
  47. package/dist/constants.js +26 -0
  48. package/dist/constants.js.map +1 -0
  49. package/dist/layout.js.map +1 -1
  50. package/dist/model/msaModel.js +3 -2
  51. package/dist/model/msaModel.js.map +1 -1
  52. package/dist/model/treeModel.js +9 -8
  53. package/dist/model/treeModel.js.map +1 -1
  54. package/dist/model.d.ts +271 -15
  55. package/dist/model.js +427 -128
  56. package/dist/model.js.map +1 -1
  57. package/dist/neighborJoining.d.ts +1 -0
  58. package/dist/neighborJoining.js +839 -0
  59. package/dist/neighborJoining.js.map +1 -0
  60. package/dist/neighborJoining.test.d.ts +1 -0
  61. package/dist/neighborJoining.test.js +110 -0
  62. package/dist/neighborJoining.test.js.map +1 -0
  63. package/dist/parsers/A3mMSA.d.ts +43 -0
  64. package/dist/parsers/A3mMSA.js +277 -0
  65. package/dist/parsers/A3mMSA.js.map +1 -0
  66. package/dist/parsers/A3mMSA.test.d.ts +1 -0
  67. package/dist/parsers/A3mMSA.test.js +138 -0
  68. package/dist/parsers/A3mMSA.test.js.map +1 -0
  69. package/dist/parsers/ClustalMSA.d.ts +4 -4
  70. package/dist/parsers/ClustalMSA.js +3 -1
  71. package/dist/parsers/ClustalMSA.js.map +1 -1
  72. package/dist/parsers/FastaMSA.js +17 -16
  73. package/dist/parsers/FastaMSA.js.map +1 -1
  74. package/dist/renderToSvg.d.ts +1 -0
  75. package/dist/renderToSvg.js +48 -18
  76. package/dist/renderToSvg.js.map +1 -1
  77. package/dist/rowCoordinateCalculations.js +2 -0
  78. package/dist/rowCoordinateCalculations.js.map +1 -1
  79. package/dist/types.d.ts +2 -3
  80. package/dist/util.js +17 -9
  81. package/dist/util.js.map +1 -1
  82. package/dist/version.d.ts +1 -1
  83. package/dist/version.js +1 -1
  84. package/package.json +6 -6
  85. package/src/colorSchemes.ts +1 -179
  86. package/src/components/ConservationTrack.tsx +104 -0
  87. package/src/components/Loading.tsx +44 -2
  88. package/src/components/MSAView.tsx +68 -0
  89. package/src/components/SequenceTextArea.tsx +3 -2
  90. package/src/components/TextTrack.tsx +7 -4
  91. package/src/components/Track.tsx +25 -9
  92. package/src/components/dialogs/ExportSVGDialog.tsx +25 -1
  93. package/src/components/header/GappynessSlider.tsx +35 -0
  94. package/src/components/header/Header.tsx +3 -1
  95. package/src/components/header/HeaderMenu.tsx +36 -15
  96. package/src/components/minimap/MinimapSVG.tsx +6 -3
  97. package/src/components/msa/MSACanvasBlock.tsx +66 -48
  98. package/src/components/msa/renderMSABlock.ts +103 -40
  99. package/src/components/msa/renderMSAMouseover.ts +9 -0
  100. package/src/components/tracks/renderTracksSvg.ts +157 -0
  101. package/src/components/tree/TreeNodeMenu.tsx +2 -2
  102. package/src/components/tree/renderTreeCanvas.ts +25 -34
  103. package/src/constants.ts +27 -0
  104. package/src/layout.ts +1 -6
  105. package/src/model/msaModel.ts +4 -2
  106. package/src/model/treeModel.ts +19 -8
  107. package/src/model.ts +517 -140
  108. package/src/neighborJoining.test.ts +129 -0
  109. package/src/neighborJoining.ts +885 -0
  110. package/src/parsers/A3mMSA.test.ts +164 -0
  111. package/src/parsers/A3mMSA.ts +321 -0
  112. package/src/parsers/ClustalMSA.ts +7 -5
  113. package/src/parsers/FastaMSA.ts +17 -17
  114. package/src/renderToSvg.tsx +105 -26
  115. package/src/rowCoordinateCalculations.ts +2 -0
  116. package/src/types.ts +2 -4
  117. package/src/util.ts +21 -8
  118. package/src/version.ts +1 -1
  119. package/dist/components/dialogs/TracklistDialog.d.ts +0 -7
  120. package/dist/components/dialogs/TracklistDialog.js +0 -23
  121. package/dist/components/dialogs/TracklistDialog.js.map +0 -1
  122. package/src/components/dialogs/TracklistDialog.tsx +0 -73

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