react-msaview 4.4.4 → 4.4.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +111 -111
- package/bundle/index.js.LICENSE.txt +24 -6
- package/bundle/index.js.map +1 -1
- package/dist/components/dialogs/InterProScanDialog.js +1 -1
- package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
- package/dist/components/dialogs/SettingsDialog.js +1 -1
- package/dist/components/dialogs/SettingsDialog.js.map +1 -1
- package/dist/components/msa/MSACanvasBlock.js +8 -1
- package/dist/components/msa/MSACanvasBlock.js.map +1 -1
- package/dist/components/msa/renderMSABlock.js +22 -4
- package/dist/components/msa/renderMSABlock.js.map +1 -1
- package/dist/components/msa/renderMSAMouseover.js +21 -1
- package/dist/components/msa/renderMSAMouseover.js.map +1 -1
- package/dist/components/tree/TreeCanvas.js +61 -2
- package/dist/components/tree/TreeCanvas.js.map +1 -1
- package/dist/components/tree/TreeCanvasBlock.js +56 -5
- package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
- package/dist/components/tree/TreeNodeMenu.js +6 -2
- package/dist/components/tree/TreeNodeMenu.js.map +1 -1
- package/dist/components/tree/renderTreeCanvas.d.ts +14 -4
- package/dist/components/tree/renderTreeCanvas.js +3 -0
- package/dist/components/tree/renderTreeCanvas.js.map +1 -1
- package/dist/components/util.js +1 -1
- package/dist/components/util.js.map +1 -1
- package/dist/layout.d.ts +4 -1
- package/dist/layout.js +30 -8
- package/dist/layout.js.map +1 -1
- package/dist/model/treeModel.js +2 -2
- package/dist/model/treeModel.js.map +1 -1
- package/dist/model.d.ts +14 -79
- package/dist/model.js +94 -4
- package/dist/model.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/package.json +3 -2
- package/src/components/dialogs/InterProScanDialog.tsx +1 -1
- package/src/components/dialogs/SettingsDialog.tsx +1 -1
- package/src/components/msa/MSACanvasBlock.tsx +8 -1
- package/src/components/msa/renderMSABlock.ts +32 -2
- package/src/components/msa/renderMSAMouseover.ts +26 -0
- package/src/components/tree/TreeCanvas.tsx +76 -1
- package/src/components/tree/TreeCanvasBlock.tsx +69 -5
- package/src/components/tree/TreeNodeMenu.tsx +12 -1
- package/src/components/tree/renderTreeCanvas.ts +20 -4
- package/src/components/util.ts +1 -1
- package/src/layout.ts +48 -8
- package/src/model/treeModel.ts +2 -2
- package/src/model.ts +108 -5
- package/src/version.ts +1 -1
- package/dist/DataModel.d.ts +0 -34
- package/dist/DataModel.js +0 -46
- package/dist/DataModel.js.map +0 -1
- package/dist/DialogQueue.d.ts +0 -25
- package/dist/DialogQueue.js +0 -44
- package/dist/DialogQueue.js.map +0 -1
- package/dist/SelectedStructuresMixin.d.ts +0 -46
- package/dist/SelectedStructuresMixin.js +0 -52
- package/dist/SelectedStructuresMixin.js.map +0 -1
- package/dist/StructureModel.d.ts +0 -9
- package/dist/StructureModel.js +0 -11
- package/dist/StructureModel.js.map +0 -1
- package/dist/UniprotTrack.d.ts +0 -27
- package/dist/UniprotTrack.js +0 -53
- package/dist/UniprotTrack.js.map +0 -1
- package/dist/components/BoxTrack.d.ts +0 -7
- package/dist/components/BoxTrack.js +0 -15
- package/dist/components/BoxTrack.js.map +0 -1
- package/dist/components/BoxTrackBlock.d.ts +0 -8
- package/dist/components/BoxTrackBlock.js +0 -136
- package/dist/components/BoxTrackBlock.js.map +0 -1
- package/dist/components/ExportSVGDialog.d.ts +0 -6
- package/dist/components/ExportSVGDialog.js +0 -39
- package/dist/components/ExportSVGDialog.js.map +0 -1
- package/dist/components/Header.d.ts +0 -6
- package/dist/components/Header.js +0 -62
- package/dist/components/Header.js.map +0 -1
- package/dist/components/HeaderInfoArea.d.ts +0 -6
- package/dist/components/HeaderInfoArea.js +0 -12
- package/dist/components/HeaderInfoArea.js.map +0 -1
- package/dist/components/ImportForm/ImportFormExamples.d.ts +0 -6
- package/dist/components/ImportForm/ImportFormExamples.js +0 -50
- package/dist/components/ImportForm/ImportFormExamples.js.map +0 -1
- package/dist/components/ImportForm/data/seq2.d.ts +0 -3
- package/dist/components/ImportForm/data/seq2.js +0 -33
- package/dist/components/ImportForm/data/seq2.js.map +0 -1
- package/dist/components/ImportForm/index.d.ts +0 -6
- package/dist/components/ImportForm/index.js +0 -31
- package/dist/components/ImportForm/index.js.map +0 -1
- package/dist/components/ImportForm/util.d.ts +0 -3
- package/dist/components/ImportForm/util.js +0 -16
- package/dist/components/ImportForm/util.js.map +0 -1
- package/dist/components/MSACanvas.d.ts +0 -6
- package/dist/components/MSACanvas.js +0 -141
- package/dist/components/MSACanvas.js.map +0 -1
- package/dist/components/MSAPanel/Loading.d.ts +0 -2
- package/dist/components/MSAPanel/Loading.js +0 -12
- package/dist/components/MSAPanel/Loading.js.map +0 -1
- package/dist/components/MSAPanel/MSABlock.d.ts +0 -8
- package/dist/components/MSAPanel/MSABlock.js +0 -62
- package/dist/components/MSAPanel/MSABlock.js.map +0 -1
- package/dist/components/MSAPanel/MSACanvas.d.ts +0 -7
- package/dist/components/MSAPanel/MSACanvas.js +0 -69
- package/dist/components/MSAPanel/MSACanvas.js.map +0 -1
- package/dist/components/MSAPanel/MSAMouseoverCanvas.d.ts +0 -6
- package/dist/components/MSAPanel/MSAMouseoverCanvas.js +0 -27
- package/dist/components/MSAPanel/MSAMouseoverCanvas.js.map +0 -1
- package/dist/components/MSAPanel/index.d.ts +0 -5
- package/dist/components/MSAPanel/index.js +0 -9
- package/dist/components/MSAPanel/index.js.map +0 -1
- package/dist/components/MSAPanel/renderMSABlock.d.ts +0 -9
- package/dist/components/MSAPanel/renderMSABlock.js +0 -89
- package/dist/components/MSAPanel/renderMSABlock.js.map +0 -1
- package/dist/components/MSAPanel/renderMSABlock_BACKUP_139826.d.ts +0 -9
- package/dist/components/MSAPanel/renderMSABlock_BACKUP_139826.js +0 -89
- package/dist/components/MSAPanel/renderMSABlock_BACKUP_139826.js.map +0 -1
- package/dist/components/MSAPanel/renderMSABlock_BASE_139826.d.ts +0 -13
- package/dist/components/MSAPanel/renderMSABlock_BASE_139826.js +0 -82
- package/dist/components/MSAPanel/renderMSABlock_BASE_139826.js.map +0 -1
- package/dist/components/MSAPanel/renderMSABlock_LOCAL_139826.d.ts +0 -9
- package/dist/components/MSAPanel/renderMSABlock_LOCAL_139826.js +0 -89
- package/dist/components/MSAPanel/renderMSABlock_LOCAL_139826.js.map +0 -1
- package/dist/components/MSAPanel/renderMSABlock_REMOTE_139826.d.ts +0 -0
- package/dist/components/MSAPanel/renderMSABlock_REMOTE_139826.js +0 -2
- package/dist/components/MSAPanel/renderMSABlock_REMOTE_139826.js.map +0 -1
- package/dist/components/MSAPanel/renderMSAMouseover.d.ts +0 -5
- package/dist/components/MSAPanel/renderMSAMouseover.js +0 -30
- package/dist/components/MSAPanel/renderMSAMouseover.js.map +0 -1
- package/dist/components/Minimap.d.ts +0 -6
- package/dist/components/Minimap.js +0 -72
- package/dist/components/Minimap.js.map +0 -1
- package/dist/components/MinimapSVG.d.ts +0 -6
- package/dist/components/MinimapSVG.js +0 -25
- package/dist/components/MinimapSVG.js.map +0 -1
- package/dist/components/MultiAlignmentSelector.d.ts +0 -6
- package/dist/components/MultiAlignmentSelector.js +0 -13
- package/dist/components/MultiAlignmentSelector.js.map +0 -1
- package/dist/components/TreePanel/TreeBranchMenu.d.ts +0 -14
- package/dist/components/TreePanel/TreeBranchMenu.js +0 -26
- package/dist/components/TreePanel/TreeBranchMenu.js.map +0 -1
- package/dist/components/TreePanel/TreeCanvas.d.ts +0 -6
- package/dist/components/TreePanel/TreeCanvas.js +0 -100
- package/dist/components/TreePanel/TreeCanvas.js.map +0 -1
- package/dist/components/TreePanel/TreeCanvasBlock.d.ts +0 -7
- package/dist/components/TreePanel/TreeCanvasBlock.js +0 -118
- package/dist/components/TreePanel/TreeCanvasBlock.js.map +0 -1
- package/dist/components/TreePanel/TreeNodeMenu.d.ts +0 -13
- package/dist/components/TreePanel/TreeNodeMenu.js +0 -74
- package/dist/components/TreePanel/TreeNodeMenu.js.map +0 -1
- package/dist/components/TreePanel/TreeRuler.d.ts +0 -6
- package/dist/components/TreePanel/TreeRuler.js +0 -8
- package/dist/components/TreePanel/TreeRuler.js.map +0 -1
- package/dist/components/TreePanel/dialogs/TreeNodeInfoDialog.d.ts +0 -9
- package/dist/components/TreePanel/dialogs/TreeNodeInfoDialog.js +0 -16
- package/dist/components/TreePanel/dialogs/TreeNodeInfoDialog.js.map +0 -1
- package/dist/components/TreePanel/index.d.ts +0 -6
- package/dist/components/TreePanel/index.js +0 -10
- package/dist/components/TreePanel/index.js.map +0 -1
- package/dist/components/TreePanel/renderTreeCanvas.d.ts +0 -46
- package/dist/components/TreePanel/renderTreeCanvas.js +0 -180
- package/dist/components/TreePanel/renderTreeCanvas.js.map +0 -1
- package/dist/components/VerticalGuide.d.ts +0 -7
- package/dist/components/VerticalGuide.js +0 -30
- package/dist/components/VerticalGuide.js.map +0 -1
- package/dist/components/ZoomControls.d.ts +0 -6
- package/dist/components/ZoomControls.js +0 -59
- package/dist/components/ZoomControls.js.map +0 -1
- package/dist/components/msa/MSACanvas_BACKUP_139826.d.ts +0 -7
- package/dist/components/msa/MSACanvas_BACKUP_139826.js +0 -68
- package/dist/components/msa/MSACanvas_BACKUP_139826.js.map +0 -1
- package/dist/components/msa/MSACanvas_BASE_139826.d.ts +0 -6
- package/dist/components/msa/MSACanvas_BASE_139826.js +0 -107
- package/dist/components/msa/MSACanvas_BASE_139826.js.map +0 -1
- package/dist/components/msa/MSACanvas_LOCAL_139826.d.ts +0 -7
- package/dist/components/msa/MSACanvas_LOCAL_139826.js +0 -69
- package/dist/components/msa/MSACanvas_LOCAL_139826.js.map +0 -1
- package/dist/components/msa/MSACanvas_REMOTE_139826.d.ts +0 -6
- package/dist/components/msa/MSACanvas_REMOTE_139826.js +0 -106
- package/dist/components/msa/MSACanvas_REMOTE_139826.js.map +0 -1
- package/dist/sansserif.d.ts +0 -3
- package/dist/sansserif.js +0 -1583
- package/dist/sansserif.js.map +0 -1
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import React, { useEffect, useState, useCallback, useRef, useMemo } from 'react';
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import { Typography, CircularProgress, useTheme } from '@material-ui/core';
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import { observer } from 'mobx-react';
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import normalizeWheel from 'normalize-wheel';
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import { colorContrast } from '../util';
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import { getClustalXColor, getPercentIdentityColor } from '../colorSchemes';
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import * as PIXI from 'pixi.js';
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import { Stage, Graphics } from '@inlet/react-pixi';
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function Rectangle(props) {
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const draw = useCallback(g => {
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g.clear();
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g.beginFill(props.color);
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g.drawRect(props.x, props.y, props.width, props.height);
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g.endFill();
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}, [props]);
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return React.createElement(Graphics, { draw: draw });
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}
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const MSABlock = observer(({ model }) => {
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const { msaAreaWidth, height, colWidth, bgColor, columns, rowHeight, hierarchy, colorScheme, colorSchemeName, colStats, scrollX, } = model;
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const theme = useTheme();
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const contrastScheme = useMemo(() => colorContrast(colorScheme, theme), [colorScheme, theme]);
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console.log({ scrollX });
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return (React.createElement(Stage, { width: msaAreaWidth, height: height }, hierarchy.leaves().map(node => {
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const {
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//@ts-ignore
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x: y,
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//@ts-ignore
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data: { name }, } = node;
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return columns[name].split('').map((letter, i) => {
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const color = colorSchemeName === 'clustalx_protein_dynamic'
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? getClustalXColor(colStats[i], model, name, i)
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: colorSchemeName === 'percent_identity_dynamic'
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? getPercentIdentityColor(colStats[i], model, name, i)
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: colorScheme[letter.toUpperCase()];
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if (bgColor) {
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const x = i * colWidth;
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const hex = PIXI.utils.string2hex(color || '');
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return (React.createElement(Rectangle, { key: y + '_' + x, color: hex, x: x + scrollX, y: y - rowHeight, width: colWidth, height: rowHeight }));
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}
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});
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})));
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});
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const MSACanvas = observer(({ model }) => {
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const { MSA, msaFilehandle } = model;
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const ref = useRef(null);
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// wheel
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const scheduled = useRef(false);
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const deltaX = useRef(0);
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const deltaY = useRef(0);
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// mouse click-and-drag scrolling
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const prevX = useRef(0);
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const prevY = useRef(0);
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const [mouseDragging, setMouseDragging] = useState(false);
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useEffect(() => {
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const curr = ref.current;
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if (!curr) {
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return;
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}
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function onWheel(origEvent) {
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const event = normalizeWheel(origEvent);
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deltaX.current += event.pixelX;
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deltaY.current += event.pixelY;
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if (!scheduled.current) {
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scheduled.current = true;
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requestAnimationFrame(() => {
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model.doScrollX(-deltaX.current);
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model.doScrollY(-deltaY.current);
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deltaX.current = 0;
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deltaY.current = 0;
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scheduled.current = false;
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});
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}
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origEvent.preventDefault();
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}
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curr.addEventListener('wheel', onWheel);
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return () => {
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curr.removeEventListener('wheel', onWheel);
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};
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}, [model]);
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useEffect(() => {
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let cleanup = () => { };
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function globalMouseMove(event) {
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event.preventDefault();
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const currX = event.clientX;
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const currY = event.clientY;
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const distanceX = currX - prevX.current;
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const distanceY = currY - prevY.current;
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if (distanceX || distanceY) {
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// use rAF to make it so multiple event handlers aren't fired per-frame
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// see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
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if (!scheduled.current) {
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scheduled.current = true;
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window.requestAnimationFrame(() => {
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model.doScrollX(distanceX);
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model.doScrollY(distanceY);
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scheduled.current = false;
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prevX.current = event.clientX;
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prevY.current = event.clientY;
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});
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}
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}
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}
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function globalMouseUp() {
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prevX.current = 0;
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if (mouseDragging) {
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setMouseDragging(false);
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}
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}
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if (mouseDragging) {
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window.addEventListener('mousemove', globalMouseMove, true);
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window.addEventListener('mouseup', globalMouseUp, true);
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cleanup = () => {
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window.removeEventListener('mousemove', globalMouseMove, true);
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window.removeEventListener('mouseup', globalMouseUp, true);
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};
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}
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return cleanup;
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}, [model, mouseDragging]);
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return (React.createElement("div", { ref: ref, onMouseDown: event => {
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// check if clicking a draggable element or a resize handle
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const target = event.target;
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if (target.draggable || target.dataset.resizer) {
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return;
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}
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// otherwise do click and drag scroll
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if (event.button === 0) {
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prevX.current = event.clientX;
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prevY.current = event.clientY;
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setMouseDragging(true);
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}
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}, onMouseUp: event => {
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event.preventDefault();
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setMouseDragging(false);
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}, onMouseLeave: event => {
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event.preventDefault();
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} }, !MSA && !msaFilehandle ? null : !MSA ? (React.createElement("div", { style: { position: 'absolute', left: '50%', top: '50%' } },
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React.createElement(CircularProgress, null),
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React.createElement(Typography, null, "Loading..."))) : (React.createElement(MSABlock, { model: model }))));
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});
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export default MSACanvas;
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//# sourceMappingURL=MSACanvas.js.map
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import { CircularProgress, Typography } from '@mui/material';
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{"version":3,"file":"Loading.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/Loading.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,gBAAgB,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC5D,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,MAAM,CAAC,OAAO,UAAU,OAAO;IAC7B,OAAO,CACL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,IAAI,EAAE,KAAK;YACX,GAAG,EAAE,KAAK;SACX;QAED,oBAAC,gBAAgB,OAAG;QACpB,oBAAC,UAAU,qBAAwB,CAC/B,CACP,CAAA;AACH,CAAC"}
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import React, { useEffect, useRef, useMemo } from 'react';
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import { useTheme } from '@mui/material';
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import { autorun } from 'mobx';
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import { observer } from 'mobx-react';
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// locals
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import { renderMSABlock } from './renderMSABlock';
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import { colorContrast } from '../../util';
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const MSABlock = observer(function ({ model, offsetX, offsetY, }) {
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const { colWidth, rowHeight, scrollY, scrollX, colorScheme, blockSize, mouseClickCol, mouseClickRow, highResScaleFactor, } = model;
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return ctx
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? autorun(() => {
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renderMSABlock({
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ctx,
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theme,
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offsetX,
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offsetY,
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contrastScheme,
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}, [model, offsetX, offsetY, theme, contrastScheme]);
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return (React.createElement("canvas", { ref: ref, onMouseMove: event => {
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const { left, top } = ref.current.getBoundingClientRect();
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const mouseX = event.clientX - left + offsetX;
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const mouseY = event.clientY - top + offsetY;
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const x = Math.floor(mouseX / colWidth) + 1;
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const y = Math.floor(mouseY / rowHeight);
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model.setMousePos(x, y);
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}, onClick: event => {
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if (!ref.current) {
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return;
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}
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const { left, top } = ref.current.getBoundingClientRect();
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const mouseX = event.clientX - left + offsetX;
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const mouseY = event.clientY - top + offsetY;
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const x = Math.floor(mouseX / colWidth) + 1;
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const y = Math.floor(mouseY / rowHeight);
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if (x === mouseClickCol && y === mouseClickRow) {
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model.setMouseClickPos(undefined, undefined);
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}
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else {
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model.setMouseClickPos(x, y);
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}
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}, onMouseLeave: () => model.setMousePos(), width: blockSize * highResScaleFactor, height: blockSize * highResScaleFactor, style: {
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position: 'absolute',
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top: scrollY + offsetY,
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left: scrollX + offsetX,
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width: blockSize,
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height: blockSize,
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} }));
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});
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export default MSABlock;
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//# sourceMappingURL=MSABlock.js.map
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@@ -1 +0,0 @@
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{"version":3,"file":"MSABlock.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/MSABlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,OAAO,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,SAAS;AACT,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAA;AAEjD,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAA;AAE1C,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAClC,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,OAAO,EACP,OAAO,EACP,WAAW,EACX,SAAS,EACT,aAAa,EACb,aAAa,EACb,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IAExB,MAAM,cAAc,GAAG,OAAO,CAC5B,GAAG,EAAE,CAAC,aAAa,CAAC,WAAW,EAAE,KAAK,CAAC,EACvC,CAAC,WAAW,EAAE,KAAK,CAAC,CACrB,CAAA;IAED,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,GAAG;YACR,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE;gBACX,cAAc,CAAC;oBACb,GAAG;oBACH,KAAK;oBACL,OAAO;oBACP,OAAO;oBACP,cAAc;oBACd,KAAK;iBACN,CAAC,CAAA;YACJ,CAAC,CAAC;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,cAAc,CAAC,CAAC,CAAA;IACpD,OAAO,CACL,gCACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;gBACjB,OAAM;YACR,CAAC;YACD,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;YACzD,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAA;YAC7C,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAA;YAC5C,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAA;YAC3C,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAAA;YACxC,KAAK,CAAC,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;QACzB,CAAC,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;YACf,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;gBACjB,OAAM;YACR,CAAC;YACD,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;YACzD,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAA;YAC7C,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAA;YAC5C,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAA;YAC3C,MAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAAA;YACxC,IAAI,CAAC,KAAK,aAAa,IAAI,CAAC,KAAK,aAAa,EAAE,CAAC;gBAC/C,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,CAAA;YAC9C,CAAC;iBAAM,CAAC;gBACN,KAAK,CAAC,gBAAgB,CAAC,CAAC,EAAE,CAAC,CAAC,CAAA;YAC9B,CAAC;QACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,WAAW,EAAE,EACvC,KAAK,EAAE,SAAS,GAAG,kBAAkB,EACrC,MAAM,EAAE,SAAS,GAAG,kBAAkB,EACtC,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,OAAO,GAAG,OAAO;YACtB,IAAI,EAAE,OAAO,GAAG,OAAO;YACvB,KAAK,EAAE,SAAS;YAChB,MAAM,EAAE,SAAS;SAClB,GACD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}
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@@ -1,69 +0,0 @@
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import 'pixi.js/text-bitmap';
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import React, { useEffect, useMemo, useRef, useState } from 'react';
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import { observer } from 'mobx-react';
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import { ErrorMessage } from '@jbrowse/core/ui';
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import { useTheme } from '@mui/material';
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import { Application } from 'pixi.js';
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import { renderMSABlock } from './renderMSABlock';
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import { colorContrast } from '../../util';
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// Helper Component to ensure assets are loaded for docusaurus live examples
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const MSACanvas = observer(function MSACanvas2({ model, }) {
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const { colorScheme, msaAreaWidth, height } = model;
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const ref = useRef(null);
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const [error, setError] = useState();
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const theme = useTheme();
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const contrastScheme = useMemo(() => colorContrast(colorScheme, theme), [colorScheme, theme]);
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useEffect(() => {
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;
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try {
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if (!ref.current) {
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return;
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}
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const app = new Application();
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await app.init({
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height,
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resizeTo: ref.current,
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});
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const letters = [];
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// for (const letter of 'ABCDEFGHIJKLMNOPQRSTUVWXYZ') {
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// const x = new BitmapText({
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// text: letter,
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// x: msaAreaWidth * Math.random(),
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// y: height * Math.random(),
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// style: {
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// fontFamily: 'Arial',
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// fontSize: 20,
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// },
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// })
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// letters.push(x)
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// app.stage.addChild(x)
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// }
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// Add a ticker callback to move the sprite back and forth
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// app.ticker.add(ticker => {
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// for (const elt of letters) {
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// elt.updateTransform({
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// x: elt.x + (Math.random() - 0.5) * 1,
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// y: elt.y + (Math.random() - 0.5) * 1,
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// })
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// }
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// })
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renderMSABlock({ app, contrastScheme, theme, model });
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}
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catch (e) {
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setError(e);
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console.error(e);
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}
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})();
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}, [height, model, theme, contrastScheme, msaAreaWidth]);
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const e = error;
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return e ? (React.createElement(ErrorMessage, { error: e })) : (React.createElement("canvas", { onWheel: event => {
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model.setScrollX(model.scrollX - event.deltaX);
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model.setScrollY(model.scrollY - event.deltaY);
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}, width: msaAreaWidth, height: height, ref: ref }));
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});
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export default MSACanvas;
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//# sourceMappingURL=MSACanvas.js.map
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@@ -1 +0,0 @@
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1
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{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,CAAA;AAC5B,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACnE,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,WAAW,EAAc,MAAM,SAAS,CAAA;AAIjD,OAAO,EAAE,cAAc,EAAE,MAAM,kBAAkB,CAAA;AACjD,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAA;AAE1C,4EAA4E;AAE5E,MAAM,SAAS,GAAG,QAAQ,CAAC,SAAS,UAAU,CAAC,EAC7C,KAAK,GAGN;IACC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,GAAG,KAAK,CAAA;IACnD,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IAExB,MAAM,cAAc,GAAG,OAAO,CAC5B,GAAG,EAAE,CAAC,aAAa,CAAC,WAAW,EAAE,KAAK,CAAC,EACvC,CAAC,WAAW,EAAE,KAAK,CAAC,CACrB,CAAA;IAED,SAAS,CAAC,GAAG,EAAE;QACb,mEAAmE;QACnE,CAAC;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI,CAAC;gBACH,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;oBACjB,OAAM;gBACR,CAAC;gBACD,MAAM,GAAG,GAAG,IAAI,WAAW,EAAE,CAAA;gBAC7B,MAAM,GAAG,CAAC,IAAI,CAAC;oBACb,KAAK,EAAE,YAAY;oBACnB,MAAM;oBACN,MAAM,EAAE,GAAG,CAAC,OAAO;oBACnB,QAAQ,EAAE,GAAG,CAAC,OAAO;iBACtB,CAAC,CAAA;gBAEF,MAAM,OAAO,GAAG,EAAkB,CAAA;gBAClC,uDAAuD;gBACvD,+BAA+B;gBAC/B,oBAAoB;gBACpB,uCAAuC;gBACvC,iCAAiC;gBACjC,eAAe;gBACf,6BAA6B;gBAC7B,sBAAsB;gBACtB,SAAS;gBACT,OAAO;gBACP,oBAAoB;gBACpB,0BAA0B;gBAC1B,IAAI;gBAEJ,0DAA0D;gBAC1D,6BAA6B;gBAC7B,iCAAiC;gBACjC,4BAA4B;gBAC5B,8CAA8C;gBAC9C,8CAA8C;gBAC9C,SAAS;gBACT,MAAM;gBACN,KAAK;gBACL,cAAc,CAAC,EAAE,GAAG,EAAE,cAAc,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,CAAA;YACvD,CAAC;YAAC,OAAO,CAAC,EAAE,CAAC;gBACX,QAAQ,CAAC,CAAC,CAAC,CAAA;gBACX,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAClB,CAAC;QACH,CAAC,CAAC,EAAE,CAAA;IACN,CAAC,EAAE,CAAC,MAAM,EAAE,KAAK,EAAE,KAAK,EAAE,cAAc,EAAE,YAAY,CAAC,CAAC,CAAA;IACxD,MAAM,CAAC,GAAG,KAAK,CAAA;IACf,OAAO,CAAC,CAAC,CAAC,CAAC,CACT,oBAAC,YAAY,IAAC,KAAK,EAAE,CAAC,GAAI,CAC3B,CAAC,CAAC,CAAC,CACF,gCACE,OAAO,EAAE,KAAK,CAAC,EAAE;YACf,KAAK,CAAC,UAAU,CAAC,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,CAAA;YAC9C,KAAK,CAAC,UAAU,CAAC,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC,CAAA;QAChD,CAAC,EACD,KAAK,EAAE,YAAY,EACnB,MAAM,EAAE,MAAM,EACd,GAAG,EAAE,GAAG,GACR,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,SAAS,CAAA"}
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@@ -1,27 +0,0 @@
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1
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import React, { useEffect, useRef } from 'react';
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import { observer } from 'mobx-react';
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import { autorun } from 'mobx';
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import { renderMouseover } from './renderMSAMouseover';
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const MSAMouseoverCanvas = observer(function ({ model, }) {
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const ref = useRef(null);
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const { height, width } = model;
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useEffect(() => {
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const ctx = ref.current?.getContext('2d');
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return ctx
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? autorun(() => {
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renderMouseover({ ctx, model });
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})
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: undefined;
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}, [model]);
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return (React.createElement("canvas", { ref: ref, id: "mouseover", width: width, height: height, style: {
|
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position: 'absolute',
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top: 0,
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left: 0,
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width,
|
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height,
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zIndex: 1000,
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pointerEvents: 'none',
|
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-
} }));
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});
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export default MSAMouseoverCanvas;
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//# sourceMappingURL=MSAMouseoverCanvas.js.map
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@@ -1 +0,0 @@
|
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1
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-
{"version":3,"file":"MSAMouseoverCanvas.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/MSAMouseoverCanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAI9B,OAAO,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAA;AAEtD,MAAM,kBAAkB,GAAG,QAAQ,CAAC,UAAU,EAC5C,KAAK,GAGN;IACC,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,OAAO,GAAG;YACR,CAAC,CAAC,OAAO,CAAC,GAAG,EAAE;gBACX,eAAe,CAAC,EAAE,GAAG,EAAE,KAAK,EAAE,CAAC,CAAA;YACjC,CAAC,CAAC;YACJ,CAAC,CAAC,SAAS,CAAA;IACf,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,OAAO,CACL,gCACE,GAAG,EAAE,GAAG,EACR,EAAE,EAAC,WAAW,EACd,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,CAAC;YACN,IAAI,EAAE,CAAC;YACP,KAAK;YACL,MAAM;YACN,MAAM,EAAE,IAAI;YACZ,aAAa,EAAE,MAAM;SACtB,GACD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kBAAkB,CAAA"}
|
|
@@ -1,9 +0,0 @@
|
|
|
1
|
-
import React from 'react';
|
|
2
|
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import MSACanvas from './MSACanvas';
|
|
3
|
-
import MSAMouseoverCanvas from './MSAMouseoverCanvas';
|
|
4
|
-
export default function MSAPanel({ model }) {
|
|
5
|
-
return (React.createElement("div", { style: { position: 'relative' } },
|
|
6
|
-
React.createElement(MSACanvas, { model: model }),
|
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7
|
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React.createElement(MSAMouseoverCanvas, { model: model })));
|
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}
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//# sourceMappingURL=index.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/index.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AAGrD,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,EAAE,KAAK,EAA2B;IACjE,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QAClC,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI;QAC3B,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAChC,CACP,CAAA;AACH,CAAC"}
|
|
@@ -1,9 +0,0 @@
|
|
|
1
|
-
import { MsaViewModel } from '../../model';
|
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2
|
-
import { Theme } from '@mui/material';
|
|
3
|
-
import { Application } from 'pixi.js';
|
|
4
|
-
export declare function renderMSABlock({ model, app, contrastScheme, theme, }: {
|
|
5
|
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theme: Theme;
|
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6
|
-
model: MsaViewModel;
|
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7
|
-
contrastScheme: Record<string, string>;
|
|
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|
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app: Application;
|
|
9
|
-
}): void;
|
|
@@ -1,89 +0,0 @@
|
|
|
1
|
-
import { getClustalXColor, getPercentIdentityColor } from '../../colorSchemes';
|
|
2
|
-
import { BitmapText } from 'pixi.js';
|
|
3
|
-
export function renderMSABlock({ model, app, contrastScheme, theme, }) {
|
|
4
|
-
const { hierarchy, msaAreaWidth, scrollX, scrollY, colWidth, blockSize, height, rowHeight, highResScaleFactor, } = model;
|
|
5
|
-
const offsetX = scrollX;
|
|
6
|
-
const offsetY = scrollY;
|
|
7
|
-
const k = highResScaleFactor;
|
|
8
|
-
const bx = msaAreaWidth;
|
|
9
|
-
const by = height;
|
|
10
|
-
const leaves = hierarchy.leaves();
|
|
11
|
-
const yStart = Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight));
|
|
12
|
-
const yEnd = Math.max(0, Math.ceil((offsetY + by + rowHeight) / rowHeight));
|
|
13
|
-
const xStart = Math.max(0, Math.floor(offsetX / colWidth));
|
|
14
|
-
const xEnd = Math.max(0, Math.ceil((offsetX + bx) / colWidth));
|
|
15
|
-
const visibleLeaves = leaves.slice(yStart, yEnd);
|
|
16
|
-
drawTiles({
|
|
17
|
-
model,
|
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18
|
-
app,
|
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|
-
theme,
|
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20
|
-
offsetX,
|
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21
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offsetY,
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xStart,
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xEnd,
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visibleLeaves,
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drawText({
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contrastScheme,
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theme,
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xStart,
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visibleLeaves,
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});
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}
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function drawTiles({ model, offsetX, app, visibleLeaves, theme, xStart, xEnd, }) {
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const { bgColor, colorSchemeName, colorScheme, colStats, columns, colWidth, rowHeight, } = model;
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for (const node of visibleLeaves) {
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const {
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// @ts-expect-error
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x: y, data: { name }, } = node;
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const str = columns[name]?.slice(xStart, xEnd);
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for (let i = 0; i < str?.length; i++) {
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const letter = str[i];
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const color = colorSchemeName === 'clustalx_protein_dynamic'
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? getClustalXColor(colStats[xStart + i], model, name, xStart + i)
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: colorSchemeName === 'percent_identity_dynamic'
|
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|
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? getPercentIdentityColor(colStats[xStart + i], model, name, xStart + i)
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: colorScheme[letter.toUpperCase()];
|
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if (bgColor) {
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const x = i * colWidth + offsetX - (offsetX % colWidth);
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// ctx.fillStyle = color || theme.palette.background.default
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// ctx.fillRect(x, y - rowHeight, colWidth, rowHeight)
|
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}
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}
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}
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}
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function drawText({ model, offsetX, contrastScheme, app, visibleLeaves, xStart, xEnd, }) {
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const { bgColor, colorScheme, columns, colWidth, rowHeight } = model;
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if (rowHeight >= 5 && colWidth > rowHeight / 2) {
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for (const node of visibleLeaves) {
|
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const {
|
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// @ts-expect-error
|
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x: y, data: { name }, } = node;
|
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const str = columns[name]?.slice(xStart, xEnd);
|
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for (let i = 0; i < str?.length; i++) {
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const letter = str[i];
|
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const color = colorScheme[letter.toUpperCase()];
|
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|
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const contrast = contrastScheme[letter.toUpperCase()] || 'black';
|
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const x = i * colWidth + offsetX - (offsetX % colWidth);
|
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// note: -rowHeight/4 matches +rowHeight/4 in tree
|
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// ctx.fillStyle = bgColor ? contrast : color || 'black'
|
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// ctx.fillText(letter, x + colWidth / 2, y - rowHeight / 4)
|
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const t = new BitmapText({
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text: letter,
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x,
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y,
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style: {
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fontFamily: 'Arial',
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fontSize: 20,
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},
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});
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|
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app.stage.addChild(t);
|
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|
-
}
|
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}
|
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}
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}
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//# sourceMappingURL=renderMSABlock.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"renderMSABlock.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/renderMSABlock.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,gBAAgB,EAAE,uBAAuB,EAAE,MAAM,oBAAoB,CAAA;AAI9E,OAAO,EAAe,UAAU,EAAE,MAAM,SAAS,CAAA;AAEjD,MAAM,UAAU,cAAc,CAAC,EAC7B,KAAK,EACL,GAAG,EACH,cAAc,EACd,KAAK,GAMN;IACC,MAAM,EACJ,SAAS,EACT,YAAY,EACZ,OAAO,EACP,OAAO,EACP,QAAQ,EACR,SAAS,EACT,MAAM,EACN,SAAS,EACT,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,OAAO,GAAG,OAAO,CAAA;IACvB,MAAM,OAAO,GAAG,OAAO,CAAA;IACvB,MAAM,CAAC,GAAG,kBAAkB,CAAA;IAC5B,MAAM,EAAE,GAAG,YAAY,CAAA;IACvB,MAAM,EAAE,GAAG,MAAM,CAAA;IACjB,MAAM,MAAM,GAAG,SAAS,CAAC,MAAM,EAAE,CAAA;IAEjC,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC,OAAO,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC,CAAC,CAAA;IACzE,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,EAAE,GAAG,SAAS,CAAC,GAAG,SAAS,CAAC,CAAC,CAAA;IAC3E,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAA;IAC1D,MAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC,OAAO,GAAG,EAAE,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAA;IAC9D,MAAM,aAAa,GAAG,MAAM,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IAEhD,SAAS,CAAC;QACR,KAAK;QACL,GAAG;QACH,KAAK;QACL,OAAO;QACP,OAAO;QACP,MAAM;QACN,IAAI;QACJ,aAAa;KACd,CAAC,CAAA;IACF,QAAQ,CAAC;QACP,KAAK;QACL,GAAG;QACH,OAAO;QACP,cAAc;QACd,KAAK;QACL,MAAM;QACN,IAAI;QACJ,aAAa;KACd,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,OAAO,EACP,GAAG,EACH,aAAa,EACb,KAAK,EACL,MAAM,EACN,IAAI,GAUL;IACC,MAAM,EACJ,OAAO,EACP,eAAe,EACf,WAAW,EACX,QAAQ,EACR,OAAO,EACP,QAAQ,EACR,SAAS,GACV,GAAG,KAAK,CAAA;IAET,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;QACjC,MAAM;QACJ,mBAAmB;QACnB,CAAC,EAAE,CAAC,EACJ,IAAI,EAAE,EAAE,IAAI,EAAE,GACf,GAAG,IAAI,CAAA;QAER,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;QAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACrC,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;YACrB,MAAM,KAAK,GACT,eAAe,KAAK,0BAA0B;gBAC5C,CAAC,CAAC,gBAAgB,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,MAAM,GAAG,CAAC,CAAC;gBACjE,CAAC,CAAC,eAAe,KAAK,0BAA0B;oBAC9C,CAAC,CAAC,uBAAuB,CACrB,QAAQ,CAAC,MAAM,GAAG,CAAC,CAAC,EACpB,KAAK,EACL,IAAI,EACJ,MAAM,GAAG,CAAC,CACX;oBACH,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;YACzC,IAAI,OAAO,EAAE,CAAC;gBACZ,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAA;gBACvD,4DAA4D;gBAC5D,sDAAsD;YACxD,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,EAChB,KAAK,EACL,OAAO,EACP,cAAc,EACd,GAAG,EACH,aAAa,EACb,MAAM,EACN,IAAI,GAUL;IACC,MAAM,EAAE,OAAO,EAAE,WAAW,EAAE,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IACpE,IAAI,SAAS,IAAI,CAAC,IAAI,QAAQ,GAAG,SAAS,GAAG,CAAC,EAAE,CAAC;QAC/C,KAAK,MAAM,IAAI,IAAI,aAAa,EAAE,CAAC;YACjC,MAAM;YACJ,mBAAmB;YACnB,CAAC,EAAE,CAAC,EACJ,IAAI,EAAE,EAAE,IAAI,EAAE,GACf,GAAG,IAAI,CAAA;YACR,MAAM,GAAG,GAAG,OAAO,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;YAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;gBACrC,MAAM,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAA;gBACrB,MAAM,KAAK,GAAG,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;gBAC/C,MAAM,QAAQ,GAAG,cAAc,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,IAAI,OAAO,CAAA;gBAChE,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAA;gBAEvD,kDAAkD;gBAClD,wDAAwD;gBACxD,4DAA4D;gBAE5D,MAAM,CAAC,GAAG,IAAI,UAAU,CAAC;oBACvB,IAAI,EAAE,MAAM;oBACZ,CAAC;oBACD,CAAC;oBACD,KAAK,EAAE;wBACL,UAAU,EAAE,OAAO;wBACnB,QAAQ,EAAE,EAAE;qBACb;iBACF,CAAC,CAAA;gBACF,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;YACvB,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}
|
|
@@ -1,9 +0,0 @@
|
|
|
1
|
-
import { MsaViewModel } from '../../model';
|
|
2
|
-
import { Theme } from '@mui/material';
|
|
3
|
-
import { Application } from 'pixi.js';
|
|
4
|
-
export declare function renderMSABlock({ model, app, contrastScheme, theme, }: {
|
|
5
|
-
theme: Theme;
|
|
6
|
-
model: MsaViewModel;
|
|
7
|
-
contrastScheme: Record<string, string>;
|
|
8
|
-
app: Application;
|
|
9
|
-
}): void;
|
|
@@ -1,89 +0,0 @@
|
|
|
1
|
-
import { getClustalXColor, getPercentIdentityColor } from '../../colorSchemes';
|
|
2
|
-
import { BitmapText } from 'pixi.js';
|
|
3
|
-
export function renderMSABlock({ model, app, contrastScheme, theme, }) {
|
|
4
|
-
const { hierarchy, msaAreaWidth, scrollX, scrollY, colWidth, blockSize, height, rowHeight, highResScaleFactor, } = model;
|
|
5
|
-
const offsetX = scrollX;
|
|
6
|
-
const offsetY = scrollY;
|
|
7
|
-
const k = highResScaleFactor;
|
|
8
|
-
const bx = msaAreaWidth;
|
|
9
|
-
const by = height;
|
|
10
|
-
const leaves = hierarchy.leaves();
|
|
11
|
-
const yStart = Math.max(0, Math.floor((offsetY - rowHeight) / rowHeight));
|
|
12
|
-
const yEnd = Math.max(0, Math.ceil((offsetY + by + rowHeight) / rowHeight));
|
|
13
|
-
const xStart = Math.max(0, Math.floor(offsetX / colWidth));
|
|
14
|
-
const xEnd = Math.max(0, Math.ceil((offsetX + bx) / colWidth));
|
|
15
|
-
const visibleLeaves = leaves.slice(yStart, yEnd);
|
|
16
|
-
drawTiles({
|
|
17
|
-
model,
|
|
18
|
-
app,
|
|
19
|
-
theme,
|
|
20
|
-
offsetX,
|
|
21
|
-
offsetY,
|
|
22
|
-
xStart,
|
|
23
|
-
xEnd,
|
|
24
|
-
visibleLeaves,
|
|
25
|
-
});
|
|
26
|
-
drawText({
|
|
27
|
-
model,
|
|
28
|
-
app,
|
|
29
|
-
offsetX,
|
|
30
|
-
contrastScheme,
|
|
31
|
-
theme,
|
|
32
|
-
xStart,
|
|
33
|
-
xEnd,
|
|
34
|
-
visibleLeaves,
|
|
35
|
-
});
|
|
36
|
-
}
|
|
37
|
-
function drawTiles({ model, offsetX, app, visibleLeaves, theme, xStart, xEnd, }) {
|
|
38
|
-
const { bgColor, colorSchemeName, colorScheme, colStats, columns, colWidth, rowHeight, } = model;
|
|
39
|
-
for (const node of visibleLeaves) {
|
|
40
|
-
const {
|
|
41
|
-
// @ts-expect-error
|
|
42
|
-
x: y, data: { name }, } = node;
|
|
43
|
-
const str = columns[name]?.slice(xStart, xEnd);
|
|
44
|
-
for (let i = 0; i < str?.length; i++) {
|
|
45
|
-
const letter = str[i];
|
|
46
|
-
const color = colorSchemeName === 'clustalx_protein_dynamic'
|
|
47
|
-
? getClustalXColor(colStats[xStart + i], model, name, xStart + i)
|
|
48
|
-
: colorSchemeName === 'percent_identity_dynamic'
|
|
49
|
-
? getPercentIdentityColor(colStats[xStart + i], model, name, xStart + i)
|
|
50
|
-
: colorScheme[letter.toUpperCase()];
|
|
51
|
-
if (bgColor) {
|
|
52
|
-
const x = i * colWidth + offsetX - (offsetX % colWidth);
|
|
53
|
-
// ctx.fillStyle = color || theme.palette.background.default
|
|
54
|
-
// ctx.fillRect(x, y - rowHeight, colWidth, rowHeight)
|
|
55
|
-
}
|
|
56
|
-
}
|
|
57
|
-
}
|
|
58
|
-
}
|
|
59
|
-
function drawText({ model, offsetX, contrastScheme, app, visibleLeaves, xStart, xEnd, }) {
|
|
60
|
-
const { bgColor, colorScheme, columns, colWidth, rowHeight } = model;
|
|
61
|
-
if (rowHeight >= 5 && colWidth > rowHeight / 2) {
|
|
62
|
-
for (const node of visibleLeaves) {
|
|
63
|
-
const {
|
|
64
|
-
// @ts-expect-error
|
|
65
|
-
x: y, data: { name }, } = node;
|
|
66
|
-
const str = columns[name]?.slice(xStart, xEnd);
|
|
67
|
-
for (let i = 0; i < str?.length; i++) {
|
|
68
|
-
const letter = str[i];
|
|
69
|
-
const color = colorScheme[letter.toUpperCase()];
|
|
70
|
-
const contrast = contrastScheme[letter.toUpperCase()] || 'black';
|
|
71
|
-
const x = i * colWidth + offsetX - (offsetX % colWidth);
|
|
72
|
-
// note: -rowHeight/4 matches +rowHeight/4 in tree
|
|
73
|
-
// ctx.fillStyle = bgColor ? contrast : color || 'black'
|
|
74
|
-
// ctx.fillText(letter, x + colWidth / 2, y - rowHeight / 4)
|
|
75
|
-
const t = new BitmapText({
|
|
76
|
-
text: letter,
|
|
77
|
-
x,
|
|
78
|
-
y,
|
|
79
|
-
style: {
|
|
80
|
-
fontFamily: 'Arial',
|
|
81
|
-
fontSize: 20,
|
|
82
|
-
},
|
|
83
|
-
});
|
|
84
|
-
app.stage.addChild(t);
|
|
85
|
-
}
|
|
86
|
-
}
|
|
87
|
-
}
|
|
88
|
-
}
|
|
89
|
-
//# sourceMappingURL=renderMSABlock_BACKUP_139826.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
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@@ -1,13 +0,0 @@
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1
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-
import { MsaViewModel } from '../../model';
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2
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import { Theme } from '@mui/material';
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3
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export declare function renderMSABlock({ model, offsetX, offsetY, contrastScheme, ctx, theme, highResScaleFactorOverride, blockSizeXOverride, blockSizeYOverride, }: {
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4
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offsetX: number;
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offsetY: number;
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theme: Theme;
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7
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model: MsaViewModel;
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8
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contrastScheme: Record<string, string>;
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9
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ctx: CanvasRenderingContext2D;
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10
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highResScaleFactorOverride?: number;
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11
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blockSizeXOverride?: number;
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12
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blockSizeYOverride?: number;
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13
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}): void;
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