react-msaview 4.2.0 → 4.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundle/index.js +104 -213
- package/bundle/index.js.LICENSE.txt +173 -0
- package/bundle/index.js.map +1 -0
- package/dist/components/dialogs/SettingsDialog.js +1 -1
- package/dist/components/dialogs/SettingsDialog.js.map +1 -1
- package/dist/components/header/Header.js +4 -2
- package/dist/components/header/Header.js.map +1 -1
- package/dist/components/header/HeaderMenu.js +199 -11
- package/dist/components/header/HeaderMenu.js.map +1 -1
- package/dist/components/header/MultiAlignmentSelector.js +3 -3
- package/dist/components/header/MultiAlignmentSelector.js.map +1 -1
- package/dist/components/header/{HeaderMenuExtra.d.ts → SettingsMenu.d.ts} +2 -2
- package/dist/components/header/SettingsMenu.js +141 -0
- package/dist/components/header/SettingsMenu.js.map +1 -0
- package/dist/components/header/ZoomStar.js +1 -1
- package/dist/components/header/ZoomStar.js.map +1 -1
- package/dist/model.d.ts +2 -4
- package/dist/model.js +9 -16
- package/dist/model.js.map +1 -1
- package/dist/version.d.ts +1 -1
- package/dist/version.js +1 -1
- package/dist/webpack.d.ts +5 -0
- package/dist/webpack.js +7 -0
- package/dist/webpack.js.map +1 -0
- package/package.json +2 -2
- package/src/components/dialogs/SettingsDialog.tsx +1 -1
- package/src/components/header/Header.tsx +4 -2
- package/src/components/header/HeaderMenu.tsx +215 -11
- package/src/components/header/MultiAlignmentSelector.tsx +7 -6
- package/src/components/header/SettingsMenu.tsx +169 -0
- package/src/components/header/ZoomStar.tsx +1 -2
- package/src/model.ts +23 -30
- package/src/version.ts +1 -1
- package/src/webpack.ts +9 -0
- package/dist/components/header/HeaderMenuExtra.js +0 -128
- package/dist/components/header/HeaderMenuExtra.js.map +0 -1
- package/src/components/header/HeaderMenuExtra.tsx +0 -141
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@@ -62,7 +62,7 @@ const MSASettings = observer(function MSASettings({ model, }) {
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React.createElement(Checkbox2, { checked: drawMsaLetters, label: "Draw letters", onChange: () => {
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model.setDrawMsaLetters(!drawMsaLetters);
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} }),
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-
React.createElement(Checkbox2, { checked: bgColor, label: "Color
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65
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+
React.createElement(Checkbox2, { checked: bgColor, label: "Color letters instead of background of tiles", onChange: () => {
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model.setBgColor(!bgColor);
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} }),
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React.createElement(Checkbox2, { checked: contrastLettering, label: "Use contrast lettering", onChange: () => {
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@@ -1 +1 @@
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1
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-
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{"version":3,"file":"SettingsDialog.js","sourceRoot":"","sources":["../../../src/components/dialogs/SettingsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EACL,MAAM,EACN,aAAa,EACb,aAAa,EACb,QAAQ,EACR,MAAM,EACN,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,YAAY,MAAM,oBAAoB,CAAA;AAC7C,OAAO,SAAS,MAAM,cAAc,CAAA;AAIpC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,KAAK,EAAE;QACL,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM;KAChB;IACD,IAAI,EAAE;QACJ,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAC3E,OAAO,CACL;QACE,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,WAAW,IAAC,KAAK,EAAE,KAAK,GAAI,CAC5B,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EACJ,QAAQ,EACR,UAAU,EACV,eAAe,EACf,gBAAgB,EAChB,MAAM,EACN,aAAa,EACb,oBAAoB,EACpB,SAAS,GACV,GAAG,KAAK,CAAA;IAET,OAAO,CACL;QACE,+CAAqB;QACrB,oBAAC,SAAS,IACR,OAAO,EAAE,aAAa,EACtB,KAAK,EAAC,qBAAqB,EAC3B,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;YACxC,CAAC,GACD;QAEF,oBAAC,SAAS,IACR,OAAO,EAAE,eAAe,EACxB,KAAK,EAAC,0CAA0C,EAChD,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC,CAAA;YAC5C,CAAC,GACD;QACF,oBAAC,SAAS,IACR,OAAO,EAAE,QAAQ,EACjB,KAAK,EAAC,YAAY,EAClB,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;YAC9B,CAAC,GACD;QAEF,oBAAC,SAAS,IACR,OAAO,EAAE,gBAAgB,EACzB,KAAK,EAAC,0BAA0B,EAChC,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,gBAAgB,CAAC,CAAA;YAC9C,CAAC,GACD;QAEF,oBAAC,SAAS,IACR,OAAO,EAAE,UAAU,EACnB,KAAK,EAAC,aAAa,EACnB,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,aAAa,CAAC,CAAC,UAAU,CAAC,CAAA;YAClC,CAAC,GACD;QACD,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACf;YACE,oBAAC,SAAS,IACR,OAAO,EAAE,oBAAoB,EAC7B,KAAK,EAAC,mCAAmC,EACzC,QAAQ,EAAE,GAAG,EAAE;oBACb,KAAK,CAAC,uBAAuB,CAAC,CAAC,oBAAoB,CAAC,CAAA;gBACtD,CAAC,GACD;YACD,oBAAoB,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAC7B,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;gBAC1B,oBAAC,UAAU;;oBAAc,SAAS;0BAAiB;gBACnD,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,GAAG,EAAE,EAAE,EACP,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;wBACnB,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAA;oBACzB,CAAC,GACD,CACE,CACP,CACG,CACP,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,WAAW,GAAG,QAAQ,CAAC,SAAS,WAAW,CAAC,EAChD,KAAK,GAGN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EACJ,OAAO,EACP,iBAAiB,EACjB,QAAQ,EACR,gBAAgB,EAChB,cAAc,EACd,eAAe,EACf,QAAQ,EACR,SAAS,GACV,GAAG,KAAK,CAAA;IAET,OAAO,CACL;QACE,8CAAoB;QACpB,oBAAC,SAAS,IACR,OAAO,EAAE,cAAc,EACvB,KAAK,EAAC,cAAc,EACpB,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;YAC1C,CAAC,GACD;QACF,oBAAC,SAAS,IACR,OAAO,EAAE,OAAO,EAChB,KAAK,EAAC,8CAA8C,EACpD,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,UAAU,CAAC,CAAC,OAAO,CAAC,CAAA;YAC5B,CAAC,GACD;QACF,oBAAC,SAAS,IACR,OAAO,EAAE,iBAAiB,EAC1B,KAAK,EAAC,wBAAwB,EAC9B,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,oBAAoB,CAAC,CAAC,iBAAiB,CAAC,CAAA;YAChD,CAAC,GACD;QACF,oBAAC,SAAS,IACR,OAAO,EAAE,QAAQ,EACjB,KAAK,EAAC,8BAA8B,EACpC,QAAQ,EAAE,GAAG,EAAE;gBACb,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;YAC9B,CAAC,GACD;QACD,QAAQ,CAAC,CAAC,CAAC,CACV,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;YAC1B,oBAAC,UAAU;;gBAAsB,gBAAgB;yBAAoB;YACrE,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,gBAAgB,EACvB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;oBACnB,KAAK,CAAC,mBAAmB,CAAC,GAAG,CAAC,CAAA;gBAChC,CAAC,GACD,CACE,CACP,CAAC,CAAC,CAAC,IAAI;QACR,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;YAC1B,oBAAC,UAAU;;gBAAgB,QAAQ;sBAAiB;YACpD,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,EAAE,EACP,KAAK,EAAE,QAAQ,EACf,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;oBACnB,KAAK,CAAC,WAAW,CAAC,GAAG,CAAC,CAAA;gBACxB,CAAC,GACD,CACE;QACN,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;YAC1B,oBAAC,UAAU;;gBAAc,SAAS;sBAAiB;YACnD,oBAAC,MAAM,IACL,SAAS,EAAE,OAAO,CAAC,KAAK,EACxB,GAAG,EAAE,CAAC,EACN,GAAG,EAAE,EAAE,EACP,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE;oBACnB,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAA;gBACzB,CAAC,GACD,CACE;QAEN,oBAAC,SAAS,IACR,MAAM,QACN,KAAK,EAAC,cAAc,EACpB,KAAK,EAAE,eAAe,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE;gBAChB,KAAK,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YAC9C,CAAC,IAEA,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACvC,oBAAC,QAAQ,IAAC,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,IACjC,MAAM,CACE,CACZ,CAAC,CACQ,CACR,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,UAAU,EACxC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,KAAK,EAAC,UAAU,EAChB,QAAQ,EAAC,IAAI,EACb,OAAO,EAAE,GAAG,EAAE;YACZ,OAAO,EAAE,CAAA;QACX,CAAC;QAED,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI;YACpC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;YACjC,oBAAC,aAAa;gBACZ,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;wBACZ,OAAO,EAAE,CAAA;oBACX,CAAC,aAGM,CACK,CACF,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,cAAc,CAAA"}
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@@ -4,9 +4,10 @@ import Help from '@mui/icons-material/Help';
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import { IconButton } from '@mui/material';
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import { observer } from 'mobx-react';
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import HeaderInfoArea from './HeaderInfoArea';
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import HeaderMenu from './HeaderMenu';
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import HeaderStatusArea from './HeaderStatusArea';
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import MultiAlignmentSelector from './MultiAlignmentSelector';
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import SettingsMenu from './SettingsMenu';
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import ZoomControls from './ZoomControls';
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import ZoomMenu from './ZoomMenu';
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import ZoomStar from './ZoomStar';
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@@ -17,7 +18,8 @@ const Header = observer(function ({ model }) {
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{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,
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{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AACjD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,QAAQ,MAAM,YAAY,CAAA;AAIjC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAA;AAEhE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QACvC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI;QAC5B,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC7B,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACvD,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC5B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;YAC1D,CAAC;YAED,oBAAC,IAAI,OAAG,CACG,CACT,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
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import React, { lazy } from 'react';
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import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
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import AccountTreeIcon from '@mui/icons-material/AccountTree';
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import Assignment from '@mui/icons-material/Assignment';
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import FilterAlt from '@mui/icons-material/FilterAlt';
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import FolderOpen from '@mui/icons-material/FolderOpen';
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import GridOn from '@mui/icons-material/GridOn';
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import List from '@mui/icons-material/List';
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import
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import MoreVert from '@mui/icons-material/Menu';
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import PhotoCamera from '@mui/icons-material/PhotoCamera';
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import Search from '@mui/icons-material/Search';
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import Settings from '@mui/icons-material/Settings';
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import Sort from '@mui/icons-material/Sort';
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import Visibility from '@mui/icons-material/Visibility';
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import { observer } from 'mobx-react';
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// lazies
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const SettingsDialog = lazy(() => import('../dialogs/SettingsDialog'));
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const MetadataDialog = lazy(() => import('../dialogs/MetadataDialog'));
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const TracklistDialog = lazy(() => import('../dialogs/TracklistDialog'));
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const
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const ExportSVGDialog = lazy(() => import('../dialogs/ExportSVGDialog'));
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const FeatureFilterDialog = lazy(() => import('../dialogs/FeatureDialog'));
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const UserProvidedDomainsDialog = lazy(() => import('../dialogs/UserProvidedDomainsDialog'));
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const InterProScanDialog = lazy(() => import('../dialogs/InterProScanDialog'));
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const HeaderMenu = observer(({ model }) => {
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const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, showDomains, actuallyShowDomains, subFeatureRows, drawLabels, treeWidthMatchesArea, noDomains, noTree, } = model;
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return (React.createElement(CascadingMenuButton, { menuItems: [
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{
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label: 'Return to import form',
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@@ -20,28 +32,204 @@ const HeaderMenu = observer(function ({ model }) {
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},
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},
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{
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icon: Settings,
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label: 'Settings',
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type: 'subMenu',
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subMenu: [
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{
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label: 'Tree settings',
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type: 'subMenu',
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icon: AccountTreeIcon,
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subMenu: [
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{
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label: 'Show branch length',
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type: 'checkbox',
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checked: showBranchLen,
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onClick: () => {
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model.setShowBranchLen(!showBranchLen);
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},
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},
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{
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label: 'Show tree',
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type: 'checkbox',
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checked: drawTree,
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onClick: () => {
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model.setDrawTree(!drawTree);
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},
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},
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{
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label: 'Draw clickable bubbles on tree branches',
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type: 'checkbox',
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checked: drawNodeBubbles,
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onClick: () => {
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model.setDrawNodeBubbles(!drawNodeBubbles);
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},
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},
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{
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label: 'Tree labels align right',
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type: 'checkbox',
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checked: labelsAlignRight,
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onClick: () => {
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model.setLabelsAlignRight(!labelsAlignRight);
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},
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},
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{
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label: 'Draw labels',
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type: 'checkbox',
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checked: drawLabels,
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onClick: () => {
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model.setDrawLabels(!drawLabels);
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},
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},
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...(noTree
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? []
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: [
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{
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label: 'Make tree width fit to tree area',
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type: 'checkbox',
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checked: treeWidthMatchesArea,
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onClick: () => {
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model.setTreeWidthMatchesArea(!treeWidthMatchesArea);
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},
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},
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]),
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],
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},
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{
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label: 'MSA settings',
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type: 'subMenu',
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icon: GridOn,
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subMenu: [],
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},
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{
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label: 'More',
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icon: Settings,
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type: 'subMenu',
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subMenu: [
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{
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label: 'More settings',
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onClick: () => {
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model.queueDialog(onClose => [
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SettingsDialog,
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{
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model,
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onClose,
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},
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]);
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},
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},
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],
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},
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],
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},
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{
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label: 'Metadata',
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icon: Assignment,
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onClick: () => {
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model.queueDialog(onClose => [
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model.queueDialog(onClose => [
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MetadataDialog,
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{
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model,
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onClose,
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},
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]);
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},
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icon: Settings,
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},
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{
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label: '
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label: ' tracks',
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icon: List,
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onClick: () => {
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model.queueDialog(onClose => [
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model.queueDialog(onClose => [
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TracklistDialog,
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{
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model,
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onClose,
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},
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]);
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},
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icon: Assignment,
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},
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{
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label: '
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label: 'Export SVG',
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icon: PhotoCamera,
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onClick: () => {
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model.queueDialog(onClose => [
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model.queueDialog(onClose => [
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ExportSVGDialog,
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{
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onClose,
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model,
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},
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]);
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},
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icon: List,
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},
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{
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label: 'Features/protein domains',
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type: 'subMenu',
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subMenu: [
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{
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label: 'Open domains...',
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icon: FolderOpen,
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+
onClick: () => {
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model.queueDialog(handleClose => [
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UserProvidedDomainsDialog,
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{
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handleClose,
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model,
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},
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]);
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},
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},
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{
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label: 'Query InterProScan for domains...',
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+
icon: Search,
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184
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+
onClick: () => {
|
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185
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+
model.queueDialog(handleClose => [
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186
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+
InterProScanDialog,
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187
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+
{
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handleClose,
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189
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model,
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190
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},
|
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191
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]);
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192
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+
},
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193
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+
},
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{
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195
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+
label: `Show domains${noDomains ? ' (no domains loaded)' : ''}`,
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+
disabled: noDomains,
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197
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+
icon: Visibility,
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198
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+
checked: actuallyShowDomains ? showDomains : false,
|
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199
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+
type: 'checkbox',
|
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200
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+
onClick: () => {
|
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201
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+
model.setShowDomains(!showDomains);
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202
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+
},
|
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203
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+
},
|
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204
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+
{
|
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205
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+
label: `Use sub-row layout${noDomains ? ' (no domains loaded)' : ''}`,
|
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206
|
+
disabled: noDomains,
|
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207
|
+
checked: actuallyShowDomains ? subFeatureRows : false,
|
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208
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+
icon: Sort,
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209
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+
type: 'checkbox',
|
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210
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+
onClick: () => {
|
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211
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+
model.setSubFeatureRows(!subFeatureRows);
|
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212
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+
},
|
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213
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+
},
|
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214
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+
{
|
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215
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+
label: `Filter domains${noDomains ? ' (no domains loaded)' : ''}`,
|
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216
|
+
icon: FilterAlt,
|
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217
|
+
disabled: noDomains,
|
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218
|
+
onClick: () => {
|
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219
|
+
model.queueDialog(onClose => [
|
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220
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+
FeatureFilterDialog,
|
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221
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+
{
|
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222
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+
onClose,
|
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223
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+
model,
|
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224
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+
},
|
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225
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+
]);
|
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226
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+
},
|
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227
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+
},
|
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228
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+
],
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229
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+
},
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230
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+
...model.extraViewMenuItems(),
|
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43
231
|
] },
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44
|
-
React.createElement(
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232
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+
React.createElement(MoreVert, null)));
|
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45
233
|
});
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46
234
|
export default HeaderMenu;
|
|
47
235
|
//# sourceMappingURL=HeaderMenu.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"HeaderMenu.js","sourceRoot":"","sources":["../../../src/components/header/HeaderMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,
|
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1
|
+
{"version":3,"file":"HeaderMenu.js","sourceRoot":"","sources":["../../../src/components/header/HeaderMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,eAAe,MAAM,iCAAiC,CAAA;AAC7D,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,SAAS,MAAM,+BAA+B,CAAA;AACrD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,QAAQ,MAAM,0BAA0B,CAAA;AAC/C,OAAO,WAAW,MAAM,iCAAiC,CAAA;AACzD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,SAAS;AACT,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AACtE,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AACtE,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,4BAA4B,CAAC,CAAC,CAAA;AACxE,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,4BAA4B,CAAC,CAAC,CAAA;AACxE,MAAM,mBAAmB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAC,CAAA;AAC1E,MAAM,yBAAyB,GAAG,IAAI,CACpC,GAAG,EAAE,CAAC,MAAM,CAAC,sCAAsC,CAAC,CACrD,CAAA;AACD,MAAM,kBAAkB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,+BAA+B,CAAC,CAAC,CAAA;AAE9E,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IACjE,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,WAAW,EACX,mBAAmB,EACnB,cAAc,EACd,UAAU,EACV,oBAAoB,EACpB,SAAS,EACT,MAAM,GACP,GAAG,KAAK,CAAA;IACT,OAAO,CACL,oBAAC,mBAAmB,IAClB,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,IAAI,EAAE,QAAQ;gBACd,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE;oBACP;wBACE,KAAK,EAAE,eAAe;wBACtB,IAAI,EAAE,SAAS;wBACf,IAAI,EAAE,eAAe;wBACrB,OAAO,EAAE;4BACP;gCACE,KAAK,EAAE,oBAAoB;gCAC3B,IAAI,EAAE,UAAU;gCAChB,OAAO,EAAE,aAAa;gCACtB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;gCACxC,CAAC;6BACF;4BACD;gCACE,KAAK,EAAE,WAAW;gCAClB,IAAI,EAAE,UAAU;gCAChB,OAAO,EAAE,QAAQ;gCACjB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;gCAC9B,CAAC;6BACF;4BACD;gCACE,KAAK,EAAE,yCAAyC;gCAChD,IAAI,EAAE,UAAU;gCAChB,OAAO,EAAE,eAAe;gCACxB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC,CAAA;gCAC5C,CAAC;6BACF;4BACD;gCACE,KAAK,EAAE,yBAAyB;gCAChC,IAAI,EAAE,UAAU;gCAChB,OAAO,EAAE,gBAAgB;gCACzB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,mBAAmB,CAAC,CAAC,gBAAgB,CAAC,CAAA;gCAC9C,CAAC;6BACF;4BACD;gCACE,KAAK,EAAE,aAAa;gCACpB,IAAI,EAAE,UAAU;gCAChB,OAAO,EAAE,UAAU;gCACnB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,aAAa,CAAC,CAAC,UAAU,CAAC,CAAA;gCAClC,CAAC;6BACF;4BACD,GAAG,CAAC,MAAM;gCACR,CAAC,CAAC,EAAE;gCACJ,CAAC,CAAC;oCACE;wCACE,KAAK,EAAE,kCAAkC;wCACzC,IAAI,EAAE,UAAmB;wCACzB,OAAO,EAAE,oBAAoB;wCAC7B,OAAO,EAAE,GAAG,EAAE;4CACZ,KAAK,CAAC,uBAAuB,CAAC,CAAC,oBAAoB,CAAC,CAAA;wCACtD,CAAC;qCACF;iCACF,CAAC;yBACP;qBACF;oBACD;wBACE,KAAK,EAAE,cAAc;wBACrB,IAAI,EAAE,SAAS;wBACf,IAAI,EAAE,MAAM;wBACZ,OAAO,EAAE,EAAE;qBACZ;oBACD;wBACE,KAAK,EAAE,MAAM;wBACb,IAAI,EAAE,QAAQ;wBACd,IAAI,EAAE,SAAS;wBACf,OAAO,EAAE;4BACP;gCACE,KAAK,EAAE,eAAe;gCACtB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wCAC3B,cAAc;wCACd;4CACE,KAAK;4CACL,OAAO;yCACR;qCACF,CAAC,CAAA;gCACJ,CAAC;6BACF;yBACF;qBACF;iBACF;aACF;YAED;gBACE,KAAK,EAAE,UAAU;gBACjB,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YACD;gBACE,KAAK,EAAE,SAAS;gBAChB,IAAI,EAAE,IAAI;gBACV,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YAED;gBACE,KAAK,EAAE,YAAY;gBACnB,IAAI,EAAE,WAAW;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf;4BACE,OAAO;4BACP,KAAK;yBACN;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;YACD;gBACE,KAAK,EAAE,0BAA0B;gBACjC,IAAI,EAAE,SAAS;gBACf,OAAO,EAAE;oBACP;wBACE,KAAK,EAAE,iBAAiB;wBACxB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;gCAC/B,yBAAyB;gCACzB;oCACE,WAAW;oCACX,KAAK;iCACN;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,mCAAmC;wBAC1C,IAAI,EAAE,MAAM;wBACZ,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;gCAC/B,kBAAkB;gCAClB;oCACE,WAAW;oCACX,KAAK;iCACN;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,eAAe,SAAS,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,EAAE,EAAE;wBAC/D,QAAQ,EAAE,SAAS;wBACnB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,mBAAmB,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,KAAK;wBAClD,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,cAAc,CAAC,CAAC,WAAW,CAAC,CAAA;wBACpC,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,qBAAqB,SAAS,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,EAAE,EAAE;wBACrE,QAAQ,EAAE,SAAS;wBACnB,OAAO,EAAE,mBAAmB,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK;wBACrD,IAAI,EAAE,IAAI;wBACV,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;wBAC1C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,iBAAiB,SAAS,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,EAAE,EAAE;wBACjE,IAAI,EAAE,SAAS;wBACf,QAAQ,EAAE,SAAS;wBACnB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;gCAC3B,mBAAmB;gCACnB;oCACE,OAAO;oCACP,KAAK;iCACN;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;iBACF;aACF;YACD,GAAG,KAAK,CAAC,kBAAkB,EAAE;SAC9B;QAED,oBAAC,QAAQ,OAAG,CACQ,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
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@@ -1,13 +1,13 @@
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1
1
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import React from 'react';
|
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2
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-
import {
|
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2
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+
import { MenuItem, TextField } from '@mui/material';
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3
3
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import { observer } from 'mobx-react';
|
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4
4
|
const MultiAlignmentSelector = observer(function ({ model, }) {
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5
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const { currentAlignment, alignmentNames } = model;
|
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6
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-
return alignmentNames.length > 0 ? (React.createElement(
|
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+
return alignmentNames.length > 0 ? (React.createElement(TextField, { select: true, variant: "outlined", value: currentAlignment, size: "small", onChange: event => {
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model.setCurrentAlignment(+event.target.value);
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model.setScrollX(0);
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model.setScrollY(0);
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-
} }, alignmentNames.map((option, index) => (React.createElement(
|
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} }, alignmentNames.map((option, index) => (React.createElement(MenuItem, { key: `${option}-${index}`, value: index }, option))))) : null;
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});
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12
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export default MultiAlignmentSelector;
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13
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//# sourceMappingURL=MultiAlignmentSelector.js.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"MultiAlignmentSelector.js","sourceRoot":"","sources":["../../../src/components/header/MultiAlignmentSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,
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1
|
+
{"version":3,"file":"MultiAlignmentSelector.js","sourceRoot":"","sources":["../../../src/components/header/MultiAlignmentSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,sBAAsB,GAAG,QAAQ,CAAC,UAAU,EAChD,KAAK,GAGN;IACC,MAAM,EAAE,gBAAgB,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAClD,OAAO,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACjC,oBAAC,SAAS,IACR,MAAM,QACN,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,gBAAgB,EACvB,IAAI,EAAC,OAAO,EACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;YAChB,KAAK,CAAC,mBAAmB,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YAC9C,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;QACrB,CAAC,IAEA,cAAc,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC,CACrC,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IAC9C,MAAM,CACE,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AACF,eAAe,sBAAsB,CAAA"}
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@@ -1,6 +1,6 @@
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1
1
|
import React from 'react';
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2
2
|
import type { MsaViewModel } from '../../model';
|
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3
|
-
declare const
|
|
3
|
+
declare const SettingsMenu: ({ model }: {
|
|
4
4
|
model: MsaViewModel;
|
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5
5
|
}) => React.JSX.Element;
|
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6
|
-
export default
|
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6
|
+
export default SettingsMenu;
|
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@@ -0,0 +1,141 @@
|
|
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1
|
+
import React, { lazy } from 'react';
|
|
2
|
+
import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
|
|
3
|
+
import AccountTreeIcon from '@mui/icons-material/AccountTree';
|
|
4
|
+
import ColorLensIcon from '@mui/icons-material/ColorLens';
|
|
5
|
+
import GridOn from '@mui/icons-material/GridOn';
|
|
6
|
+
import Settings from '@mui/icons-material/Settings';
|
|
7
|
+
import { observer } from 'mobx-react';
|
|
8
|
+
import colorSchemes from '../../colorSchemes';
|
|
9
|
+
// lazies
|
|
10
|
+
const SettingsDialog = lazy(() => import('../dialogs/SettingsDialog'));
|
|
11
|
+
const SettingsMenu = observer(({ model }) => {
|
|
12
|
+
const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawLabels, treeWidthMatchesArea, drawMsaLetters, noTree, bgColor, hideGaps, contrastLettering, colorSchemeName, } = model;
|
|
13
|
+
return (React.createElement(CascadingMenuButton, { closeAfterItemClick: false, menuItems: [
|
|
14
|
+
{
|
|
15
|
+
label: 'Tree settings',
|
|
16
|
+
type: 'subMenu',
|
|
17
|
+
icon: AccountTreeIcon,
|
|
18
|
+
subMenu: [
|
|
19
|
+
{
|
|
20
|
+
label: 'Show branch length',
|
|
21
|
+
type: 'checkbox',
|
|
22
|
+
checked: showBranchLen,
|
|
23
|
+
onClick: () => {
|
|
24
|
+
model.setShowBranchLen(!showBranchLen);
|
|
25
|
+
},
|
|
26
|
+
},
|
|
27
|
+
{
|
|
28
|
+
label: 'Show tree',
|
|
29
|
+
type: 'checkbox',
|
|
30
|
+
checked: drawTree,
|
|
31
|
+
onClick: () => {
|
|
32
|
+
model.setDrawTree(!drawTree);
|
|
33
|
+
},
|
|
34
|
+
},
|
|
35
|
+
{
|
|
36
|
+
label: 'Draw clickable bubbles on tree branches',
|
|
37
|
+
type: 'checkbox',
|
|
38
|
+
checked: drawNodeBubbles,
|
|
39
|
+
onClick: () => {
|
|
40
|
+
model.setDrawNodeBubbles(!drawNodeBubbles);
|
|
41
|
+
},
|
|
42
|
+
},
|
|
43
|
+
{
|
|
44
|
+
label: 'Tree labels align right',
|
|
45
|
+
type: 'checkbox',
|
|
46
|
+
checked: labelsAlignRight,
|
|
47
|
+
onClick: () => {
|
|
48
|
+
model.setLabelsAlignRight(!labelsAlignRight);
|
|
49
|
+
},
|
|
50
|
+
},
|
|
51
|
+
{
|
|
52
|
+
label: 'Draw labels',
|
|
53
|
+
type: 'checkbox',
|
|
54
|
+
checked: drawLabels,
|
|
55
|
+
onClick: () => {
|
|
56
|
+
model.setDrawLabels(!drawLabels);
|
|
57
|
+
},
|
|
58
|
+
},
|
|
59
|
+
...(noTree
|
|
60
|
+
? []
|
|
61
|
+
: [
|
|
62
|
+
{
|
|
63
|
+
label: 'Make tree width fit to tree area',
|
|
64
|
+
type: 'checkbox',
|
|
65
|
+
checked: treeWidthMatchesArea,
|
|
66
|
+
onClick: () => {
|
|
67
|
+
model.setTreeWidthMatchesArea(!treeWidthMatchesArea);
|
|
68
|
+
},
|
|
69
|
+
},
|
|
70
|
+
]),
|
|
71
|
+
],
|
|
72
|
+
},
|
|
73
|
+
{
|
|
74
|
+
label: 'MSA settings',
|
|
75
|
+
type: 'subMenu',
|
|
76
|
+
icon: GridOn,
|
|
77
|
+
subMenu: [
|
|
78
|
+
{
|
|
79
|
+
label: 'Draw letters',
|
|
80
|
+
type: 'checkbox',
|
|
81
|
+
checked: drawMsaLetters,
|
|
82
|
+
onClick: () => {
|
|
83
|
+
model.setDrawMsaLetters(!drawMsaLetters);
|
|
84
|
+
},
|
|
85
|
+
},
|
|
86
|
+
{
|
|
87
|
+
label: 'Color letters instead of background of tiles',
|
|
88
|
+
type: 'checkbox',
|
|
89
|
+
checked: !bgColor,
|
|
90
|
+
onClick: () => {
|
|
91
|
+
model.setBgColor(!bgColor);
|
|
92
|
+
},
|
|
93
|
+
},
|
|
94
|
+
{
|
|
95
|
+
label: 'Use contrast lettering',
|
|
96
|
+
type: 'checkbox',
|
|
97
|
+
checked: contrastLettering,
|
|
98
|
+
onClick: () => {
|
|
99
|
+
model.setContrastLettering(!contrastLettering);
|
|
100
|
+
},
|
|
101
|
+
},
|
|
102
|
+
{
|
|
103
|
+
label: 'Enable hiding gappy columns?',
|
|
104
|
+
type: 'checkbox',
|
|
105
|
+
checked: hideGaps,
|
|
106
|
+
onClick: () => {
|
|
107
|
+
model.setHideGaps(!hideGaps);
|
|
108
|
+
},
|
|
109
|
+
},
|
|
110
|
+
],
|
|
111
|
+
},
|
|
112
|
+
{
|
|
113
|
+
label: 'Color scheme',
|
|
114
|
+
type: 'subMenu',
|
|
115
|
+
icon: ColorLensIcon,
|
|
116
|
+
subMenu: Object.keys(colorSchemes).map(option => ({
|
|
117
|
+
label: option,
|
|
118
|
+
type: 'radio',
|
|
119
|
+
checked: colorSchemeName === option,
|
|
120
|
+
onClick: () => {
|
|
121
|
+
model.setColorSchemeName(option);
|
|
122
|
+
},
|
|
123
|
+
})),
|
|
124
|
+
},
|
|
125
|
+
{
|
|
126
|
+
label: 'More settings',
|
|
127
|
+
onClick: () => {
|
|
128
|
+
model.queueDialog(onClose => [
|
|
129
|
+
SettingsDialog,
|
|
130
|
+
{
|
|
131
|
+
model,
|
|
132
|
+
onClose,
|
|
133
|
+
},
|
|
134
|
+
]);
|
|
135
|
+
},
|
|
136
|
+
},
|
|
137
|
+
] },
|
|
138
|
+
React.createElement(Settings, null)));
|
|
139
|
+
});
|
|
140
|
+
export default SettingsMenu;
|
|
141
|
+
//# sourceMappingURL=SettingsMenu.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"SettingsMenu.js","sourceRoot":"","sources":["../../../src/components/header/SettingsMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,eAAe,MAAM,iCAAiC,CAAA;AAC7D,OAAO,aAAa,MAAM,+BAA+B,CAAA;AACzD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,YAAY,MAAM,oBAAoB,CAAA;AAI7C,SAAS;AACT,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEtE,MAAM,YAAY,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IACnE,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,UAAU,EACV,oBAAoB,EACpB,cAAc,EACd,MAAM,EACN,OAAO,EACP,QAAQ,EACR,iBAAiB,EACjB,eAAe,GAChB,GAAG,KAAK,CAAA;IACT,OAAO,CACL,oBAAC,mBAAmB,IAClB,mBAAmB,EAAE,KAAK,EAC1B,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,eAAe;gBACtB,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,eAAe;gBACrB,OAAO,EAAE;oBACP;wBACE,KAAK,EAAE,oBAAoB;wBAC3B,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,aAAa;wBACtB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;wBACxC,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,WAAW;wBAClB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,QAAQ;wBACjB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;wBAC9B,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,yCAAyC;wBAChD,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,eAAe;wBACxB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC,CAAA;wBAC5C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,yBAAyB;wBAChC,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,gBAAgB;wBACzB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,mBAAmB,CAAC,CAAC,gBAAgB,CAAC,CAAA;wBAC9C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,aAAa;wBACpB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,UAAU;wBACnB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,aAAa,CAAC,CAAC,UAAU,CAAC,CAAA;wBAClC,CAAC;qBACF;oBACD,GAAG,CAAC,MAAM;wBACR,CAAC,CAAC,EAAE;wBACJ,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,kCAAkC;gCACzC,IAAI,EAAE,UAAmB;gCACzB,OAAO,EAAE,oBAAoB;gCAC7B,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,uBAAuB,CAAC,CAAC,oBAAoB,CAAC,CAAA;gCACtD,CAAC;6BACF;yBACF,CAAC;iBACP;aACF;YACD;gBACE,KAAK,EAAE,cAAc;gBACrB,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE;oBACP;wBACE,KAAK,EAAE,cAAc;wBACrB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,cAAc;wBACvB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;wBAC1C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,8CAA8C;wBACrD,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,CAAC,OAAO;wBACjB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,UAAU,CAAC,CAAC,OAAO,CAAC,CAAA;wBAC5B,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,wBAAwB;wBAC/B,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,iBAAiB;wBAC1B,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,oBAAoB,CAAC,CAAC,iBAAiB,CAAC,CAAA;wBAChD,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,8BAA8B;wBACrC,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,QAAQ;wBACjB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;wBAC9B,CAAC;qBACF;iBACF;aACF;YACD;gBACE,KAAK,EAAE,cAAc;gBACrB,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,aAAa;gBACnB,OAAO,EAAE,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CACpC,MAAM,CAAC,EAAE,CACP,CAAC;oBACC,KAAK,EAAE,MAAM;oBACb,IAAI,EAAE,OAAO;oBACb,OAAO,EAAE,eAAe,KAAK,MAAM;oBACnC,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;oBAClC,CAAC;iBACF,CAAU,CACd;aACF;YACD;gBACE,KAAK,EAAE,eAAe;gBACtB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF;QAED,oBAAC,QAAQ,OAAG,CACQ,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
import React from 'react';
|
|
2
|
+
import RestartAlt from '@mui/icons-material/RestartAlt';
|
|
2
3
|
import { IconButton } from '@mui/material';
|
|
3
4
|
import { observer } from 'mobx-react';
|
|
4
5
|
import { makeStyles } from 'tss-react/mui';
|
|
5
|
-
import { RestartAlt } from '@mui/icons-material';
|
|
6
6
|
const useStyles = makeStyles()(theme => ({
|
|
7
7
|
dpad: {
|
|
8
8
|
display: 'grid',
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ZoomStar.js","sourceRoot":"","sources":["../../../src/components/header/ZoomStar.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,
|
|
1
|
+
{"version":3,"file":"ZoomStar.js","sourceRoot":"","sources":["../../../src/components/header/ZoomStar.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAI1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM;QACf,mBAAmB,EAAE,gBAAgB;KACtC;IACD,IAAI,EAAE;QACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,gCAAO;QACP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,EAAE,CAAA;YACxB,CAAC,SAGU;QACb,gCAAO;QAEP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;YAC3B,CAAC,SAGU;QACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,SAAS,EAAE,CAAA;YACnB,CAAC;YAED,oBAAC,UAAU,OAAG,CACH;QACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,gBAAgB,EAAE,CAAA;YAC1B,CAAC,SAGU;QAEb,gCAAO;QACP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,eAAe,EAAE,CAAA;YACzB,CAAC,SAGU;QACb,gCAAO,CACH,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}
|
package/dist/model.d.ts
CHANGED
|
@@ -30,13 +30,12 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
|
|
|
30
30
|
} & {
|
|
31
31
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
32
32
|
showDomains: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
33
|
+
hideGaps: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
33
34
|
allowedGappyness: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
34
35
|
contrastLettering: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
35
36
|
subFeatureRows: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
36
37
|
type: import("mobx-state-tree").ISimpleType<"MsaView">;
|
|
37
38
|
drawMsaLetters: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
38
|
-
hideGaps: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
39
|
-
drawTreeText: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
40
39
|
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
41
40
|
rowHeight: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
42
41
|
scrollY: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
@@ -875,12 +874,11 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
|
|
|
875
874
|
colorSchemeName: string;
|
|
876
875
|
id: string;
|
|
877
876
|
showDomains: boolean;
|
|
877
|
+
hideGaps: boolean;
|
|
878
878
|
allowedGappyness: number;
|
|
879
879
|
contrastLettering: boolean;
|
|
880
880
|
subFeatureRows: boolean;
|
|
881
881
|
drawMsaLetters: boolean;
|
|
882
|
-
hideGaps: boolean;
|
|
883
|
-
drawTreeText: boolean;
|
|
884
882
|
rowHeight: number;
|
|
885
883
|
scrollY: number;
|
|
886
884
|
scrollX: number;
|
package/dist/model.js
CHANGED
|
@@ -51,6 +51,10 @@ function stateModelFactory() {
|
|
|
51
51
|
* #property
|
|
52
52
|
*/
|
|
53
53
|
showDomains: false,
|
|
54
|
+
/**
|
|
55
|
+
* #property
|
|
56
|
+
*/
|
|
57
|
+
hideGaps: true,
|
|
54
58
|
/**
|
|
55
59
|
* #property
|
|
56
60
|
*/
|
|
@@ -72,14 +76,6 @@ function stateModelFactory() {
|
|
|
72
76
|
* #property
|
|
73
77
|
*/
|
|
74
78
|
drawMsaLetters: true,
|
|
75
|
-
/**
|
|
76
|
-
* #property
|
|
77
|
-
*/
|
|
78
|
-
hideGaps: false,
|
|
79
|
-
/**
|
|
80
|
-
* #property
|
|
81
|
-
*/
|
|
82
|
-
drawTreeText: true,
|
|
83
79
|
/**
|
|
84
80
|
* #property
|
|
85
81
|
* height of the div containing the view, px
|
|
@@ -186,7 +182,7 @@ function stateModelFactory() {
|
|
|
186
182
|
* #volatile
|
|
187
183
|
* obtained from localStorage
|
|
188
184
|
*/
|
|
189
|
-
showZoomStar: localStorageGetBoolean(showZoomStarKey,
|
|
185
|
+
showZoomStar: localStorageGetBoolean(showZoomStarKey, false),
|
|
190
186
|
/**
|
|
191
187
|
* #volatile
|
|
192
188
|
*/
|
|
@@ -551,19 +547,16 @@ function stateModelFactory() {
|
|
|
551
547
|
*/
|
|
552
548
|
get tree() {
|
|
553
549
|
const text = self.data.tree;
|
|
554
|
-
|
|
555
|
-
|
|
550
|
+
return text
|
|
551
|
+
? reparseTree(generateNodeIds(text.startsWith('BioTreeContainer')
|
|
556
552
|
? flatToTree(parseAsn1(text))
|
|
557
|
-
: parseNewick(text.startsWith('SEQ') ? parseEmfTree(text).tree : text)))
|
|
558
|
-
|
|
559
|
-
else {
|
|
560
|
-
return reparseTree(this.MSA?.getTree() || {
|
|
553
|
+
: parseNewick(text.startsWith('SEQ') ? parseEmfTree(text).tree : text)))
|
|
554
|
+
: reparseTree(this.MSA?.getTree() || {
|
|
561
555
|
noTree: true,
|
|
562
556
|
children: [],
|
|
563
557
|
id: 'empty',
|
|
564
558
|
name: 'empty',
|
|
565
559
|
});
|
|
566
|
-
}
|
|
567
560
|
},
|
|
568
561
|
/**
|
|
569
562
|
* #getter
|