react-msaview 4.1.1 → 4.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. package/bundle/index.js +104 -213
  2. package/bundle/index.js.LICENSE.txt +173 -0
  3. package/bundle/index.js.map +1 -0
  4. package/dist/components/TextTrack.d.ts +2 -1
  5. package/dist/components/TextTrack.js.map +1 -1
  6. package/dist/components/Track.js.map +1 -1
  7. package/dist/components/header/Header.js +10 -3
  8. package/dist/components/header/Header.js.map +1 -1
  9. package/dist/components/header/HeaderMenu.js +199 -11
  10. package/dist/components/header/HeaderMenu.js.map +1 -1
  11. package/dist/components/header/MultiAlignmentSelector.js +3 -3
  12. package/dist/components/header/MultiAlignmentSelector.js.map +1 -1
  13. package/dist/components/header/{HeaderMenuExtra.d.ts → SettingsMenu.d.ts} +2 -2
  14. package/dist/components/header/SettingsMenu.js +141 -0
  15. package/dist/components/header/SettingsMenu.js.map +1 -0
  16. package/dist/components/header/ZoomControls.d.ts +1 -1
  17. package/dist/components/header/ZoomControls.js +1 -46
  18. package/dist/components/header/ZoomControls.js.map +1 -1
  19. package/dist/components/header/ZoomMenu.d.ts +6 -0
  20. package/dist/components/header/ZoomMenu.js +33 -0
  21. package/dist/components/header/ZoomMenu.js.map +1 -0
  22. package/dist/components/header/ZoomStar.d.ts +6 -0
  23. package/dist/components/header/ZoomStar.js +40 -0
  24. package/dist/components/header/ZoomStar.js.map +1 -0
  25. package/dist/components/tree/renderTreeCanvas.js +6 -3
  26. package/dist/components/tree/renderTreeCanvas.js.map +1 -1
  27. package/dist/flatToTree.d.ts +17 -0
  28. package/dist/flatToTree.js +41 -0
  29. package/dist/flatToTree.js.map +1 -0
  30. package/dist/model.d.ts +21 -28
  31. package/dist/model.js +47 -32
  32. package/dist/model.js.map +1 -1
  33. package/dist/parseAsn1.d.ts +34 -0
  34. package/dist/parseAsn1.js +385 -0
  35. package/dist/parseAsn1.js.map +1 -0
  36. package/dist/parseAsn1.test.d.ts +1 -0
  37. package/dist/parseAsn1.test.js +8 -0
  38. package/dist/parseAsn1.test.js.map +1 -0
  39. package/dist/parsers/ClustalMSA.d.ts +1 -1
  40. package/dist/parsers/ClustalMSA.js.map +1 -1
  41. package/dist/parsers/EmfMSA.d.ts +1 -1
  42. package/dist/parsers/FastaMSA.d.ts +1 -1
  43. package/dist/parsers/StockholmMSA.d.ts +1 -1
  44. package/dist/parsers/StockholmMSA.js.map +1 -1
  45. package/dist/renderToSvg.d.ts +3 -2
  46. package/dist/renderToSvg.js.map +1 -1
  47. package/dist/reparseTree.d.ts +1 -1
  48. package/dist/reparseTree.js +2 -0
  49. package/dist/reparseTree.js.map +1 -1
  50. package/dist/types.d.ts +38 -0
  51. package/dist/types.js +2 -0
  52. package/dist/types.js.map +1 -0
  53. package/dist/util.d.ts +6 -20
  54. package/dist/util.js +19 -0
  55. package/dist/util.js.map +1 -1
  56. package/dist/version.d.ts +1 -1
  57. package/dist/version.js +1 -1
  58. package/dist/webpack.d.ts +5 -0
  59. package/dist/webpack.js +7 -0
  60. package/dist/webpack.js.map +1 -0
  61. package/package.json +4 -3
  62. package/src/__snapshots__/parseAsn1.test.ts.snap +2400 -0
  63. package/src/components/TextTrack.tsx +2 -1
  64. package/src/components/Track.tsx +0 -2
  65. package/src/components/header/Header.tsx +11 -3
  66. package/src/components/header/HeaderMenu.tsx +215 -11
  67. package/src/components/header/MultiAlignmentSelector.tsx +7 -6
  68. package/src/components/header/SettingsMenu.tsx +169 -0
  69. package/src/components/header/ZoomControls.tsx +1 -52
  70. package/src/components/header/ZoomMenu.tsx +42 -0
  71. package/src/components/header/ZoomStar.tsx +74 -0
  72. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +1 -1
  73. package/src/components/msa/renderMSABlock.ts +1 -1
  74. package/src/components/tree/renderTreeCanvas.ts +13 -3
  75. package/src/flatToTree.ts +57 -0
  76. package/src/model.ts +75 -61
  77. package/src/parseAsn1.test.ts +11 -0
  78. package/src/parseAsn1.ts +494 -0
  79. package/src/parsers/ClustalMSA.ts +2 -1
  80. package/src/parsers/EmfMSA.ts +1 -1
  81. package/src/parsers/FastaMSA.ts +1 -1
  82. package/src/parsers/StockholmMSA.ts +4 -1
  83. package/src/renderToSvg.tsx +6 -4
  84. package/src/reparseTree.ts +3 -1
  85. package/src/types.ts +44 -0
  86. package/src/util.ts +26 -22
  87. package/src/version.ts +1 -1
  88. package/src/webpack.ts +9 -0
  89. package/dist/components/header/HeaderMenuExtra.js +0 -122
  90. package/dist/components/header/HeaderMenuExtra.js.map +0 -1
  91. package/src/components/header/HeaderMenuExtra.tsx +0 -135
@@ -1,5 +1,6 @@
1
1
  import React from 'react';
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- import type { ITextTrack, MsaViewModel } from '../model';
2
+ import type { MsaViewModel } from '../model';
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+ import type { ITextTrack } from '../types';
3
4
  declare const AnnotationTrack: ({ track, model, }: {
4
5
  track: ITextTrack;
5
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  model: MsaViewModel;
@@ -1 +1 @@
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@@ -1 +1 @@
1
- {"version":3,"file":"Track.js","sourceRoot":"","sources":["../../src/components/Track.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhE,OAAO,iBAAiB,MAAM,mCAAmC,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAM1C,SAAS;AACT,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,OAAO,EAAE,CAAC;KACX;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAC3C,KAAK,EACL,KAAK,GAKN;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAqB,CAAA;IAC7D,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,aAAa,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC7D,MAAM,EACJ,MAAM,EACN,KAAK,EAAE,EAAE,IAAI,EAAE,GAChB,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,gBAAgB,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAA;IAEnD,OAAO,CACL,6BACE,KAAK,EAAE;YACL,KAAK;YACL,MAAM;YACN,UAAU,EAAE,CAAC;YACb,SAAS,EAAE,OAAO;YAClB,QAAQ,EAAE,gBAAgB;SAC3B;QAEA,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE;QAAE,GAAG;QAC5B,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE;gBACL,KAAK,EAAE,gBAAgB;gBACvB,MAAM,EAAE,gBAAgB;aACzB,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,CAAA;YAClC,CAAC;YAED,oBAAC,iBAAiB,OAAG,CACV;QACZ,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,IAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,kBAAkB,EAAE,CAAC,EACrB,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE;gBACZ,WAAW,CAAC,SAAS,CAAC,CAAA;YACxB,CAAC;YAED,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;oBACjC,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,YAGQ;YACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE;qBAChC,CAAC,CAAA;oBACF,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,eAGQ,CACN,CACR,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,EAC/B,KAAK,EACL,KAAK,GAKN;IACC,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IACnC,MAAM,EACJ,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,GACzB,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,SAAqB;YACpC,MAAM,KAAK,GAAG,cAAc,CAAC,SAAS,CAAC,CAAA;YACvC,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAE9B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;gBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;gBACxB,qBAAqB,CAAC,GAAG,EAAE;oBACzB,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;gBAC3B,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,SAAS,CAAC,cAAc,EAAE,CAAA;QAC5B,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QACvC,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IACX,OAAO,CACL,6BAAK,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE;QACpD,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI;QAC1C,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,iBAAiB,EAAE,UAAU,EAAE,CAAC,EAAE,GAAI;QAC3D,6BAAK,GAAG,EAAE,GAAG,IACV,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,IAAG,GAAG,KAAK,EAAE,CAAO,CAC/D,CAAC,CAAC,CAAC,CACF,oBAAC,KAAK,CAAC,cAAc,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CACrD,CACG,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,KAAK,CAAA"}
1
+ {"version":3,"file":"Track.js","sourceRoot":"","sources":["../../src/components/Track.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhE,OAAO,iBAAiB,MAAM,mCAAmC,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAI1C,SAAS;AACT,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,OAAO,EAAE,CAAC;KACX;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAC3C,KAAK,EACL,KAAK,GAKN;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAqB,CAAA;IAC7D,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,aAAa,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC7D,MAAM,EACJ,MAAM,EACN,KAAK,EAAE,EAAE,IAAI,EAAE,GAChB,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,gBAAgB,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAA;IAEnD,OAAO,CACL,6BACE,KAAK,EAAE;YACL,KAAK;YACL,MAAM;YACN,UAAU,EAAE,CAAC;YACb,SAAS,EAAE,OAAO;YAClB,QAAQ,EAAE,gBAAgB;SAC3B;QAEA,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE;QAAE,GAAG;QAC5B,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE;gBACL,KAAK,EAAE,gBAAgB;gBACvB,MAAM,EAAE,gBAAgB;aACzB,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,CAAA;YAClC,CAAC;YAED,oBAAC,iBAAiB,OAAG,CACV;QACZ,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,IAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,kBAAkB,EAAE,CAAC,EACrB,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE;gBACZ,WAAW,CAAC,SAAS,CAAC,CAAA;YACxB,CAAC;YAED,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;oBACjC,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,YAGQ;YACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE;qBAChC,CAAC,CAAA;oBACF,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,eAGQ,CACN,CACR,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,EAC/B,KAAK,EACL,KAAK,GAKN;IACC,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IACnC,MAAM,EACJ,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,GACzB,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,SAAqB;YACpC,MAAM,KAAK,GAAG,cAAc,CAAC,SAAS,CAAC,CAAA;YACvC,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAE9B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;gBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;gBACxB,qBAAqB,CAAC,GAAG,EAAE;oBACzB,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;gBAC3B,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,SAAS,CAAC,cAAc,EAAE,CAAA;QAC5B,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QACvC,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IACX,OAAO,CACL,6BAAK,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE;QACpD,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI;QAC1C,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,iBAAiB,EAAE,UAAU,EAAE,CAAC,EAAE,GAAI;QAC3D,6BAAK,GAAG,EAAE,GAAG,IACV,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,IAAG,GAAG,KAAK,EAAE,CAAO,CAC/D,CAAC,CAAC,CAAC,CACF,oBAAC,KAAK,CAAC,cAAc,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CACrD,CACG,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,KAAK,CAAA"}
@@ -4,10 +4,13 @@ import Help from '@mui/icons-material/Help';
4
4
  import { IconButton } from '@mui/material';
5
5
  import { observer } from 'mobx-react';
6
6
  import HeaderInfoArea from './HeaderInfoArea';
7
- import HeaderMenuExtra from './HeaderMenuExtra';
7
+ import HeaderMenu from './HeaderMenu';
8
8
  import HeaderStatusArea from './HeaderStatusArea';
9
9
  import MultiAlignmentSelector from './MultiAlignmentSelector';
10
+ import SettingsMenu from './SettingsMenu';
10
11
  import ZoomControls from './ZoomControls';
12
+ import ZoomMenu from './ZoomMenu';
13
+ import ZoomStar from './ZoomStar';
11
14
  const AboutDialog = lazy(() => import('../dialogs/AboutDialog'));
12
15
  const Header = observer(function ({ model }) {
13
16
  const [ref, { height }] = useMeasure();
@@ -15,9 +18,13 @@ const Header = observer(function ({ model }) {
15
18
  model.setHeaderHeight(height || 0);
16
19
  }, [model, height]);
17
20
  return (React.createElement("div", { ref: ref, style: { display: 'flex' } },
18
- React.createElement(HeaderMenuExtra, { model: model }),
21
+ React.createElement(HeaderMenu, { model: model }),
22
+ React.createElement(SettingsMenu, { model: model }),
19
23
  React.createElement(ZoomControls, { model: model }),
20
- React.createElement(MultiAlignmentSelector, { model: model }),
24
+ model.showZoomStar ? React.createElement(ZoomStar, { model: model }) : null,
25
+ React.createElement(ZoomMenu, { model: model }),
26
+ React.createElement("div", { style: { margin: 'auto' } },
27
+ React.createElement(MultiAlignmentSelector, { model: model })),
21
28
  React.createElement(HeaderInfoArea, { model: model }),
22
29
  React.createElement(Spacer, null),
23
30
  React.createElement(HeaderStatusArea, { model: model }),
@@ -1 +1 @@
1
- {"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AACjD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAIzC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAA;AAEhE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QACvC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI;QACxC,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;YAC1D,CAAC;YAED,oBAAC,IAAI,OAAG,CACG,CACT,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
1
+ {"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AACjD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,QAAQ,MAAM,YAAY,CAAA;AAIjC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAA;AAEhE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QACvC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI;QAC5B,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC7B,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACvD,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC5B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;YAC1D,CAAC;YAED,oBAAC,IAAI,OAAG,CACG,CACT,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
@@ -1,16 +1,28 @@
1
1
  import React, { lazy } from 'react';
2
2
  import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
3
+ import AccountTreeIcon from '@mui/icons-material/AccountTree';
3
4
  import Assignment from '@mui/icons-material/Assignment';
5
+ import FilterAlt from '@mui/icons-material/FilterAlt';
4
6
  import FolderOpen from '@mui/icons-material/FolderOpen';
7
+ import GridOn from '@mui/icons-material/GridOn';
5
8
  import List from '@mui/icons-material/List';
6
- import Menu from '@mui/icons-material/Menu';
9
+ import MoreVert from '@mui/icons-material/Menu';
10
+ import PhotoCamera from '@mui/icons-material/PhotoCamera';
11
+ import Search from '@mui/icons-material/Search';
7
12
  import Settings from '@mui/icons-material/Settings';
13
+ import Sort from '@mui/icons-material/Sort';
14
+ import Visibility from '@mui/icons-material/Visibility';
8
15
  import { observer } from 'mobx-react';
9
16
  // lazies
10
17
  const SettingsDialog = lazy(() => import('../dialogs/SettingsDialog'));
11
18
  const MetadataDialog = lazy(() => import('../dialogs/MetadataDialog'));
12
19
  const TracklistDialog = lazy(() => import('../dialogs/TracklistDialog'));
13
- const HeaderMenu = observer(function ({ model }) {
20
+ const ExportSVGDialog = lazy(() => import('../dialogs/ExportSVGDialog'));
21
+ const FeatureFilterDialog = lazy(() => import('../dialogs/FeatureDialog'));
22
+ const UserProvidedDomainsDialog = lazy(() => import('../dialogs/UserProvidedDomainsDialog'));
23
+ const InterProScanDialog = lazy(() => import('../dialogs/InterProScanDialog'));
24
+ const HeaderMenu = observer(({ model }) => {
25
+ const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, showDomains, actuallyShowDomains, subFeatureRows, drawLabels, treeWidthMatchesArea, noDomains, noTree, } = model;
14
26
  return (React.createElement(CascadingMenuButton, { menuItems: [
15
27
  {
16
28
  label: 'Return to import form',
@@ -20,28 +32,204 @@ const HeaderMenu = observer(function ({ model }) {
20
32
  },
21
33
  },
22
34
  {
35
+ icon: Settings,
23
36
  label: 'Settings',
37
+ type: 'subMenu',
38
+ subMenu: [
39
+ {
40
+ label: 'Tree settings',
41
+ type: 'subMenu',
42
+ icon: AccountTreeIcon,
43
+ subMenu: [
44
+ {
45
+ label: 'Show branch length',
46
+ type: 'checkbox',
47
+ checked: showBranchLen,
48
+ onClick: () => {
49
+ model.setShowBranchLen(!showBranchLen);
50
+ },
51
+ },
52
+ {
53
+ label: 'Show tree',
54
+ type: 'checkbox',
55
+ checked: drawTree,
56
+ onClick: () => {
57
+ model.setDrawTree(!drawTree);
58
+ },
59
+ },
60
+ {
61
+ label: 'Draw clickable bubbles on tree branches',
62
+ type: 'checkbox',
63
+ checked: drawNodeBubbles,
64
+ onClick: () => {
65
+ model.setDrawNodeBubbles(!drawNodeBubbles);
66
+ },
67
+ },
68
+ {
69
+ label: 'Tree labels align right',
70
+ type: 'checkbox',
71
+ checked: labelsAlignRight,
72
+ onClick: () => {
73
+ model.setLabelsAlignRight(!labelsAlignRight);
74
+ },
75
+ },
76
+ {
77
+ label: 'Draw labels',
78
+ type: 'checkbox',
79
+ checked: drawLabels,
80
+ onClick: () => {
81
+ model.setDrawLabels(!drawLabels);
82
+ },
83
+ },
84
+ ...(noTree
85
+ ? []
86
+ : [
87
+ {
88
+ label: 'Make tree width fit to tree area',
89
+ type: 'checkbox',
90
+ checked: treeWidthMatchesArea,
91
+ onClick: () => {
92
+ model.setTreeWidthMatchesArea(!treeWidthMatchesArea);
93
+ },
94
+ },
95
+ ]),
96
+ ],
97
+ },
98
+ {
99
+ label: 'MSA settings',
100
+ type: 'subMenu',
101
+ icon: GridOn,
102
+ subMenu: [],
103
+ },
104
+ {
105
+ label: 'More',
106
+ icon: Settings,
107
+ type: 'subMenu',
108
+ subMenu: [
109
+ {
110
+ label: 'More settings',
111
+ onClick: () => {
112
+ model.queueDialog(onClose => [
113
+ SettingsDialog,
114
+ {
115
+ model,
116
+ onClose,
117
+ },
118
+ ]);
119
+ },
120
+ },
121
+ ],
122
+ },
123
+ ],
124
+ },
125
+ {
126
+ label: 'Metadata',
127
+ icon: Assignment,
24
128
  onClick: () => {
25
- model.queueDialog(onClose => [SettingsDialog, { model, onClose }]);
129
+ model.queueDialog(onClose => [
130
+ MetadataDialog,
131
+ {
132
+ model,
133
+ onClose,
134
+ },
135
+ ]);
26
136
  },
27
- icon: Settings,
28
137
  },
29
138
  {
30
- label: 'Metadata',
139
+ label: ' tracks',
140
+ icon: List,
31
141
  onClick: () => {
32
- model.queueDialog(onClose => [MetadataDialog, { model, onClose }]);
142
+ model.queueDialog(onClose => [
143
+ TracklistDialog,
144
+ {
145
+ model,
146
+ onClose,
147
+ },
148
+ ]);
33
149
  },
34
- icon: Assignment,
35
150
  },
36
151
  {
37
- label: 'Extra tracks',
152
+ label: 'Export SVG',
153
+ icon: PhotoCamera,
38
154
  onClick: () => {
39
- model.queueDialog(onClose => [TracklistDialog, { model, onClose }]);
155
+ model.queueDialog(onClose => [
156
+ ExportSVGDialog,
157
+ {
158
+ onClose,
159
+ model,
160
+ },
161
+ ]);
40
162
  },
41
- icon: List,
42
163
  },
164
+ {
165
+ label: 'Features/protein domains',
166
+ type: 'subMenu',
167
+ subMenu: [
168
+ {
169
+ label: 'Open domains...',
170
+ icon: FolderOpen,
171
+ onClick: () => {
172
+ model.queueDialog(handleClose => [
173
+ UserProvidedDomainsDialog,
174
+ {
175
+ handleClose,
176
+ model,
177
+ },
178
+ ]);
179
+ },
180
+ },
181
+ {
182
+ label: 'Query InterProScan for domains...',
183
+ icon: Search,
184
+ onClick: () => {
185
+ model.queueDialog(handleClose => [
186
+ InterProScanDialog,
187
+ {
188
+ handleClose,
189
+ model,
190
+ },
191
+ ]);
192
+ },
193
+ },
194
+ {
195
+ label: `Show domains${noDomains ? ' (no domains loaded)' : ''}`,
196
+ disabled: noDomains,
197
+ icon: Visibility,
198
+ checked: actuallyShowDomains ? showDomains : false,
199
+ type: 'checkbox',
200
+ onClick: () => {
201
+ model.setShowDomains(!showDomains);
202
+ },
203
+ },
204
+ {
205
+ label: `Use sub-row layout${noDomains ? ' (no domains loaded)' : ''}`,
206
+ disabled: noDomains,
207
+ checked: actuallyShowDomains ? subFeatureRows : false,
208
+ icon: Sort,
209
+ type: 'checkbox',
210
+ onClick: () => {
211
+ model.setSubFeatureRows(!subFeatureRows);
212
+ },
213
+ },
214
+ {
215
+ label: `Filter domains${noDomains ? ' (no domains loaded)' : ''}`,
216
+ icon: FilterAlt,
217
+ disabled: noDomains,
218
+ onClick: () => {
219
+ model.queueDialog(onClose => [
220
+ FeatureFilterDialog,
221
+ {
222
+ onClose,
223
+ model,
224
+ },
225
+ ]);
226
+ },
227
+ },
228
+ ],
229
+ },
230
+ ...model.extraViewMenuItems(),
43
231
  ] },
44
- React.createElement(Menu, null)));
232
+ React.createElement(MoreVert, null)));
45
233
  });
46
234
  export default HeaderMenu;
47
235
  //# sourceMappingURL=HeaderMenu.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"HeaderMenu.js","sourceRoot":"","sources":["../../../src/components/header/HeaderMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,SAAS;AACT,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AACtE,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AACtE,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,4BAA4B,CAAC,CAAC,CAAA;AAExE,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACtE,OAAO,CACL,oBAAC,mBAAmB,IAClB,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,KAAK,EAAE,CAAA;gBACf,CAAC;aACF;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,cAAc,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBACpE,CAAC;gBACD,IAAI,EAAE,QAAQ;aACf;YACD;gBACE,KAAK,EAAE,UAAU;gBACjB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,cAAc,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBACpE,CAAC;gBACD,IAAI,EAAE,UAAU;aACjB;YACD;gBACE,KAAK,EAAE,cAAc;gBACrB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,eAAe,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;gBACrE,CAAC;gBACD,IAAI,EAAE,IAAI;aACX;SACF;QAED,oBAAC,IAAI,OAAG,CACY,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
1
+ 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AI,EAAE,SAAS;wBACf,QAAQ,EAAE,SAAS;wBACnB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;gCAC3B,mBAAmB;gCACnB;oCACE,OAAO;oCACP,KAAK;iCACN;6BACF,CAAC,CAAA;wBACJ,CAAC;qBACF;iBACF;aACF;YACD,GAAG,KAAK,CAAC,kBAAkB,EAAE;SAC9B;QAED,oBAAC,QAAQ,OAAG,CACQ,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
@@ -1,13 +1,13 @@
1
1
  import React from 'react';
2
- import { Select } from '@mui/material';
2
+ import { MenuItem, TextField } from '@mui/material';
3
3
  import { observer } from 'mobx-react';
4
4
  const MultiAlignmentSelector = observer(function ({ model, }) {
5
5
  const { currentAlignment, alignmentNames } = model;
6
- return alignmentNames.length > 0 ? (React.createElement(Select, { native: true, value: currentAlignment, size: "small", onChange: event => {
6
+ return alignmentNames.length > 0 ? (React.createElement(TextField, { select: true, variant: "outlined", value: currentAlignment, size: "small", onChange: event => {
7
7
  model.setCurrentAlignment(+event.target.value);
8
8
  model.setScrollX(0);
9
9
  model.setScrollY(0);
10
- } }, alignmentNames.map((option, index) => (React.createElement("option", { key: `${option}-${index}`, value: index }, option))))) : null;
10
+ } }, alignmentNames.map((option, index) => (React.createElement(MenuItem, { key: `${option}-${index}`, value: index }, option))))) : null;
11
11
  });
12
12
  export default MultiAlignmentSelector;
13
13
  //# sourceMappingURL=MultiAlignmentSelector.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"MultiAlignmentSelector.js","sourceRoot":"","sources":["../../../src/components/header/MultiAlignmentSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,MAAM,EAAE,MAAM,eAAe,CAAA;AACtC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,sBAAsB,GAAG,QAAQ,CAAC,UAAU,EAChD,KAAK,GAGN;IACC,MAAM,EAAE,gBAAgB,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAClD,OAAO,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACjC,oBAAC,MAAM,IACL,MAAM,QACN,KAAK,EAAE,gBAAgB,EACvB,IAAI,EAAC,OAAO,EACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;YAChB,KAAK,CAAC,mBAAmB,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YAC9C,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;QACrB,CAAC,IAEA,cAAc,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC,CACrC,gCAAQ,GAAG,EAAE,GAAG,MAAM,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IAC5C,MAAM,CACA,CACV,CAAC,CACK,CACV,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AACF,eAAe,sBAAsB,CAAA"}
1
+ {"version":3,"file":"MultiAlignmentSelector.js","sourceRoot":"","sources":["../../../src/components/header/MultiAlignmentSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,sBAAsB,GAAG,QAAQ,CAAC,UAAU,EAChD,KAAK,GAGN;IACC,MAAM,EAAE,gBAAgB,EAAE,cAAc,EAAE,GAAG,KAAK,CAAA;IAClD,OAAO,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,CACjC,oBAAC,SAAS,IACR,MAAM,QACN,OAAO,EAAC,UAAU,EAClB,KAAK,EAAE,gBAAgB,EACvB,IAAI,EAAC,OAAO,EACZ,QAAQ,EAAE,KAAK,CAAC,EAAE;YAChB,KAAK,CAAC,mBAAmB,CAAC,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YAC9C,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YACnB,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;QACrB,CAAC,IAEA,cAAc,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC,CACrC,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IAC9C,MAAM,CACE,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CAAC,CAAA;AACF,eAAe,sBAAsB,CAAA"}
@@ -1,6 +1,6 @@
1
1
  import React from 'react';
2
2
  import type { MsaViewModel } from '../../model';
3
- declare const HeaderMenuExtra: ({ model }: {
3
+ declare const SettingsMenu: ({ model }: {
4
4
  model: MsaViewModel;
5
5
  }) => React.JSX.Element;
6
- export default HeaderMenuExtra;
6
+ export default SettingsMenu;
@@ -0,0 +1,141 @@
1
+ import React, { lazy } from 'react';
2
+ import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
3
+ import AccountTreeIcon from '@mui/icons-material/AccountTree';
4
+ import ColorLensIcon from '@mui/icons-material/ColorLens';
5
+ import GridOn from '@mui/icons-material/GridOn';
6
+ import Settings from '@mui/icons-material/Settings';
7
+ import { observer } from 'mobx-react';
8
+ import colorSchemes from '../../colorSchemes';
9
+ // lazies
10
+ const SettingsDialog = lazy(() => import('../dialogs/SettingsDialog'));
11
+ const SettingsMenu = observer(({ model }) => {
12
+ const { drawTree, showBranchLen, labelsAlignRight, drawNodeBubbles, drawLabels, treeWidthMatchesArea, drawMsaLetters, noTree, bgColor, hideGaps, contrastLettering, colorSchemeName, } = model;
13
+ return (React.createElement(CascadingMenuButton, { menuItems: [
14
+ {
15
+ label: 'Tree settings',
16
+ type: 'subMenu',
17
+ icon: AccountTreeIcon,
18
+ subMenu: [
19
+ {
20
+ label: 'Show branch length',
21
+ type: 'checkbox',
22
+ checked: showBranchLen,
23
+ onClick: () => {
24
+ model.setShowBranchLen(!showBranchLen);
25
+ },
26
+ },
27
+ {
28
+ label: 'Show tree',
29
+ type: 'checkbox',
30
+ checked: drawTree,
31
+ onClick: () => {
32
+ model.setDrawTree(!drawTree);
33
+ },
34
+ },
35
+ {
36
+ label: 'Draw clickable bubbles on tree branches',
37
+ type: 'checkbox',
38
+ checked: drawNodeBubbles,
39
+ onClick: () => {
40
+ model.setDrawNodeBubbles(!drawNodeBubbles);
41
+ },
42
+ },
43
+ {
44
+ label: 'Tree labels align right',
45
+ type: 'checkbox',
46
+ checked: labelsAlignRight,
47
+ onClick: () => {
48
+ model.setLabelsAlignRight(!labelsAlignRight);
49
+ },
50
+ },
51
+ {
52
+ label: 'Draw labels',
53
+ type: 'checkbox',
54
+ checked: drawLabels,
55
+ onClick: () => {
56
+ model.setDrawLabels(!drawLabels);
57
+ },
58
+ },
59
+ ...(noTree
60
+ ? []
61
+ : [
62
+ {
63
+ label: 'Make tree width fit to tree area',
64
+ type: 'checkbox',
65
+ checked: treeWidthMatchesArea,
66
+ onClick: () => {
67
+ model.setTreeWidthMatchesArea(!treeWidthMatchesArea);
68
+ },
69
+ },
70
+ ]),
71
+ ],
72
+ },
73
+ {
74
+ label: 'MSA settings',
75
+ type: 'subMenu',
76
+ icon: GridOn,
77
+ subMenu: [
78
+ {
79
+ label: 'Draw letters',
80
+ type: 'checkbox',
81
+ checked: drawMsaLetters,
82
+ onClick: () => {
83
+ model.setDrawMsaLetters(!drawMsaLetters);
84
+ },
85
+ },
86
+ {
87
+ label: 'Color background tiles of MSA?',
88
+ type: 'checkbox',
89
+ checked: bgColor,
90
+ onClick: () => {
91
+ model.setBgColor(!bgColor);
92
+ },
93
+ },
94
+ {
95
+ label: 'Use contrast lettering',
96
+ type: 'checkbox',
97
+ checked: contrastLettering,
98
+ onClick: () => {
99
+ model.setContrastLettering(!contrastLettering);
100
+ },
101
+ },
102
+ {
103
+ label: 'Enable hiding gappy columns?',
104
+ type: 'checkbox',
105
+ checked: hideGaps,
106
+ onClick: () => {
107
+ model.setHideGaps(!hideGaps);
108
+ },
109
+ },
110
+ ],
111
+ },
112
+ {
113
+ label: 'Color scheme',
114
+ type: 'subMenu',
115
+ icon: ColorLensIcon,
116
+ subMenu: Object.keys(colorSchemes).map(option => ({
117
+ label: option,
118
+ type: 'radio',
119
+ checked: colorSchemeName === option,
120
+ onClick: () => {
121
+ model.setColorSchemeName(option);
122
+ },
123
+ })),
124
+ },
125
+ {
126
+ label: 'More settings',
127
+ onClick: () => {
128
+ model.queueDialog(onClose => [
129
+ SettingsDialog,
130
+ {
131
+ model,
132
+ onClose,
133
+ },
134
+ ]);
135
+ },
136
+ },
137
+ ] },
138
+ React.createElement(Settings, null)));
139
+ });
140
+ export default SettingsMenu;
141
+ //# sourceMappingURL=SettingsMenu.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"SettingsMenu.js","sourceRoot":"","sources":["../../../src/components/header/SettingsMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AAEnC,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,eAAe,MAAM,iCAAiC,CAAA;AAC7D,OAAO,aAAa,MAAM,+BAA+B,CAAA;AACzD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,YAAY,MAAM,oBAAoB,CAAA;AAK7C,SAAS;AACT,MAAM,cAAc,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEtE,MAAM,YAAY,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IACnE,MAAM,EACJ,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,eAAe,EACf,UAAU,EACV,oBAAoB,EACpB,cAAc,EACd,MAAM,EACN,OAAO,EACP,QAAQ,EACR,iBAAiB,EACjB,eAAe,GAChB,GAAG,KAAK,CAAA;IACT,OAAO,CACL,oBAAC,mBAAmB,IAClB,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,eAAe;gBACtB,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,eAAe;gBACrB,OAAO,EAAE;oBACP;wBACE,KAAK,EAAE,oBAAoB;wBAC3B,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,aAAa;wBACtB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,gBAAgB,CAAC,CAAC,aAAa,CAAC,CAAA;wBACxC,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,WAAW;wBAClB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,QAAQ;wBACjB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;wBAC9B,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,yCAAyC;wBAChD,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,eAAe;wBACxB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC,CAAA;wBAC5C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,yBAAyB;wBAChC,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,gBAAgB;wBACzB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,mBAAmB,CAAC,CAAC,gBAAgB,CAAC,CAAA;wBAC9C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,aAAa;wBACpB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,UAAU;wBACnB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,aAAa,CAAC,CAAC,UAAU,CAAC,CAAA;wBAClC,CAAC;qBACF;oBACD,GAAG,CAAC,MAAM;wBACR,CAAC,CAAC,EAAE;wBACJ,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,kCAAkC;gCACzC,IAAI,EAAE,UAAmB;gCACzB,OAAO,EAAE,oBAAoB;gCAC7B,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,uBAAuB,CAAC,CAAC,oBAAoB,CAAC,CAAA;gCACtD,CAAC;6BACF;yBACF,CAAC;iBACP;aACF;YACD;gBACE,KAAK,EAAE,cAAc;gBACrB,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE;oBACP;wBACE,KAAK,EAAE,cAAc;wBACrB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,cAAc;wBACvB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,iBAAiB,CAAC,CAAC,cAAc,CAAC,CAAA;wBAC1C,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,gCAAgC;wBACvC,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,OAAO;wBAChB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,UAAU,CAAC,CAAC,OAAO,CAAC,CAAA;wBAC5B,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,wBAAwB;wBAC/B,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,iBAAiB;wBAC1B,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,oBAAoB,CAAC,CAAC,iBAAiB,CAAC,CAAA;wBAChD,CAAC;qBACF;oBACD;wBACE,KAAK,EAAE,8BAA8B;wBACrC,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,QAAQ;wBACjB,OAAO,EAAE,GAAG,EAAE;4BACZ,KAAK,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,CAAA;wBAC9B,CAAC;qBACF;iBACF;aACF;YACD;gBACE,KAAK,EAAE,cAAc;gBACrB,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,aAAa;gBACnB,OAAO,EAAE,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CACpC,MAAM,CAAC,EAAE,CACP,CAAC;oBACC,KAAK,EAAE,MAAM;oBACb,IAAI,EAAE,OAAO;oBACb,OAAO,EAAE,eAAe,KAAK,MAAM;oBACnC,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAA;oBAClC,CAAC;iBACF,CAAU,CACd;aACF;YACD;gBACE,KAAK,EAAE,eAAe;gBACtB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,cAAc;wBACd;4BACE,KAAK;4BACL,OAAO;yBACR;qBACF,CAAC,CAAA;gBACJ,CAAC;aACF;SACF;QAED,oBAAC,QAAQ,OAAG,CACQ,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}
@@ -1,5 +1,5 @@
1
1
  import React from 'react';
2
- import { MsaViewModel } from '../../model';
2
+ import type { MsaViewModel } from '../../model';
3
3
  declare const ZoomControls: ({ model, }: {
4
4
  model: MsaViewModel;
5
5
  }) => React.JSX.Element;
@@ -1,12 +1,8 @@
1
1
  import React from 'react';
2
- import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
3
- import MoreVert from '@mui/icons-material/MoreVert';
4
- import RestartAlt from '@mui/icons-material/RestartAlt';
5
2
  import ZoomIn from '@mui/icons-material/ZoomIn';
6
3
  import ZoomOut from '@mui/icons-material/ZoomOut';
7
4
  import { IconButton } from '@mui/material';
8
5
  import { observer } from 'mobx-react';
9
- // icons
10
6
  const ZoomControls = observer(function ZoomControls({ model, }) {
11
7
  return (React.createElement(React.Fragment, null,
12
8
  React.createElement(IconButton, { onClick: () => {
@@ -16,48 +12,7 @@ const ZoomControls = observer(function ZoomControls({ model, }) {
16
12
  React.createElement(IconButton, { onClick: () => {
17
13
  model.zoomOut();
18
14
  } },
19
- React.createElement(ZoomOut, null)),
20
- React.createElement(CascadingMenuButton, { menuItems: [
21
- {
22
- label: 'Zoom in horizontal',
23
- onClick: () => {
24
- model.zoomInHorizontal();
25
- },
26
- },
27
- {
28
- label: 'Zoom in vertical',
29
- onClick: () => {
30
- model.zoomInVertical();
31
- },
32
- },
33
- {
34
- label: 'Zoom out horizontal',
35
- onClick: () => {
36
- model.zoomOutHorizontal();
37
- },
38
- },
39
- {
40
- label: 'Zoom out vertical',
41
- onClick: () => {
42
- model.zoomOutVertical();
43
- },
44
- },
45
- {
46
- label: 'Show entire view',
47
- onClick: () => {
48
- model.showEntire();
49
- },
50
- },
51
- {
52
- label: 'Reset zoom to default',
53
- icon: RestartAlt,
54
- onClick: () => {
55
- model.setColWidth(16);
56
- model.setRowHeight(20);
57
- },
58
- },
59
- ] },
60
- React.createElement(MoreVert, null))));
15
+ React.createElement(ZoomOut, null))));
61
16
  });
62
17
  export default ZoomControls;
63
18
  //# sourceMappingURL=ZoomControls.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,QAAQ;AAER,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;YAChB,CAAC;YAED,oBAAC,MAAM,OAAG,CACC;QACb,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;YACjB,CAAC;YAED,oBAAC,OAAO,OAAG,CACA;QACb,oBAAC,mBAAmB,IAClB,SAAS,EAAE;gBACT;oBACE,KAAK,EAAE,oBAAoB;oBAC3B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,gBAAgB,EAAE,CAAA;oBAC1B,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,kBAAkB;oBACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,EAAE,CAAA;oBACxB,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,qBAAqB;oBAC5B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;oBAC3B,CAAC;iBACF;gBAED;oBACE,KAAK,EAAE,mBAAmB;oBAC1B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,eAAe,EAAE,CAAA;oBACzB,CAAC;iBACF;gBAED;oBACE,KAAK,EAAE,kBAAkB;oBACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,UAAU,EAAE,CAAA;oBACpB,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,uBAAuB;oBAC9B,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACrB,KAAK,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;oBACxB,CAAC;iBACF;aACF;YAED,oBAAC,QAAQ,OAAG,CACQ,CACrB,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}
1
+ {"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;YAChB,CAAC;YAED,oBAAC,MAAM,OAAG,CACC;QACb,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;YACjB,CAAC;YAED,oBAAC,OAAO,OAAG,CACA,CACZ,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}
@@ -0,0 +1,6 @@
1
+ import React from 'react';
2
+ import type { MsaViewModel } from '../../model';
3
+ declare const ZoomMenu: ({ model }: {
4
+ model: MsaViewModel;
5
+ }) => React.JSX.Element;
6
+ export default ZoomMenu;