react-msaview 4.1.1 → 4.2.0

package/dist/components/TextTrack.d.ts

@@ -1,5 +1,6 @@
 import React from 'react';
-import type { ITextTrack, MsaViewModel } from '../model';
+import type { MsaViewModel } from '../model';
+import type { ITextTrack } from '../types';
 declare const AnnotationTrack: ({ track, model, }: {
     track: ITextTrack;
     model: MsaViewModel;

package/dist/components/TextTrack.js.map

@@ -1 +1 @@
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package/dist/components/Track.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Track.js","sourceRoot":"","sources":["../../src/components/Track.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAEhE,OAAO,iBAAiB,MAAM,mCAAmC,CAAA;AACjE,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAC1D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAC5C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAI1C,SAAS;AACT,MAAM,eAAe,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,MAAM,EAAE;QACN,OAAO,EAAE,CAAC;KACX;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,MAAM,UAAU,GAAG,QAAQ,CAAC,UAAU,EAC3C,KAAK,EACL,KAAK,GAKN;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAqB,CAAA;IAC7D,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,aAAa,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAC7D,MAAM,EACJ,MAAM,EACN,KAAK,EAAE,EAAE,IAAI,EAAE,GAChB,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,gBAAgB,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,CAAA;IAEnD,OAAO,CACL,6BACE,KAAK,EAAE;YACL,KAAK;YACL,MAAM;YACN,UAAU,EAAE,CAAC;YACb,SAAS,EAAE,OAAO;YAClB,QAAQ,EAAE,gBAAgB;SAC3B;QAEA,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE;QAAE,GAAG;QAC5B,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE;gBACL,KAAK,EAAE,gBAAgB;gBACvB,MAAM,EAAE,gBAAgB;aACzB,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC,CAAA;YAClC,CAAC;YAED,oBAAC,iBAAiB,OAAG,CACV;QACZ,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,IAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,kBAAkB,EAAE,CAAC,EACrB,IAAI,QACJ,OAAO,EAAE,GAAG,EAAE;gBACZ,WAAW,CAAC,SAAS,CAAC,CAAA;YACxB,CAAC;YAED,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;oBACjC,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,YAGQ;YACX,oBAAC,QAAQ,IACP,KAAK,QACL,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC;wBAC3B,eAAe;wBACf,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE;qBAChC,CAAC,CAAA;oBACF,WAAW,CAAC,SAAS,CAAC,CAAA;gBACxB,CAAC,eAGQ,CACN,CACR,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,KAAK,GAAG,QAAQ,CAAC,UAAU,EAC/B,KAAK,EACL,KAAK,GAKN;IACC,MAAM,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IACnC,MAAM,EACJ,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,GACzB,GAAG,KAAK,CAAA;IACT,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,SAAqB;YACpC,MAAM,KAAK,GAAG,cAAc,CAAC,SAAS,CAAC,CAAA;YACvC,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAE9B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;gBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;gBACxB,qBAAqB,CAAC,GAAG,EAAE;oBACzB,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;gBAC3B,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,SAAS,CAAC,cAAc,EAAE,CAAA;QAC5B,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QACvC,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IACX,OAAO,CACL,6BAAK,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE;QACpD,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI;QAC1C,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,iBAAiB,EAAE,UAAU,EAAE,CAAC,EAAE,GAAI;QAC3D,6BAAK,GAAG,EAAE,GAAG,IACV,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,IAAG,GAAG,KAAK,EAAE,CAAO,CAC/D,CAAC,CAAC,CAAC,CACF,oBAAC,KAAK,CAAC,cAAc,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CACrD,CACG,CACF,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,KAAK,CAAA"}

package/dist/components/header/Header.js

@@ -8,6 +8,8 @@ import HeaderMenuExtra from './HeaderMenuExtra';
 import HeaderStatusArea from './HeaderStatusArea';
 import MultiAlignmentSelector from './MultiAlignmentSelector';
 import ZoomControls from './ZoomControls';
+import ZoomMenu from './ZoomMenu';
+import ZoomStar from './ZoomStar';
 const AboutDialog = lazy(() => import('../dialogs/AboutDialog'));
 const Header = observer(function ({ model }) {
     const [ref, { height }] = useMeasure();
@@ -17,7 +19,10 @@ const Header = observer(function ({ model }) {
     return (React.createElement("div", { ref: ref, style: { display: 'flex' } },
         React.createElement(HeaderMenuExtra, { model: model }),
         React.createElement(ZoomControls, { model: model }),
-        React.createElement(MultiAlignmentSelector, { model: model }),
+        model.showZoomStar ? React.createElement(ZoomStar, { model: model }) : null,
+        React.createElement(ZoomMenu, { model: model }),
+        React.createElement("div", { style: { margin: 'auto' } },
+            React.createElement(MultiAlignmentSelector, { model: model })),
         React.createElement(HeaderInfoArea, { model: model }),
         React.createElement(Spacer, null),
         React.createElement(HeaderStatusArea, { model: model }),

package/dist/components/header/Header.js.map

@@ -1 +1 @@
-{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AACjD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAIzC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAA;AAEhE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QACvC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC9B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI;QACxC,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;YAC1D,CAAC;YAED,oBAAC,IAAI,OAAG,CACG,CACT,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}
+{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/components/header/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAE9C,OAAO,UAAU,MAAM,+BAA+B,CAAA;AACtD,OAAO,IAAI,MAAM,0BAA0B,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AACjD,OAAO,sBAAsB,MAAM,0BAA0B,CAAA;AAC7D,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,QAAQ,MAAM,YAAY,CAAA;AACjC,OAAO,QAAQ,MAAM,YAAY,CAAA;AAIjC,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,wBAAwB,CAAC,CAAC,CAAA;AAEhE,MAAM,MAAM,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IAClE,MAAM,CAAC,GAAG,EAAE,EAAE,MAAM,EAAE,CAAC,GAAG,UAAU,EAAE,CAAA;IACtC,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,eAAe,CAAC,MAAM,IAAI,CAAC,CAAC,CAAA;IACpC,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACnB,OAAO,CACL,6BAAK,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;QACvC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;QAC7B,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACvD,oBAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,GAAI;QAC1B,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE;YAC5B,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC;QACN,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI;QAChC,oBAAC,MAAM,OAAG;QACV,oBAAC,gBAAgB,IAAC,KAAK,EAAE,KAAK,GAAI;QAClC,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC,CAAA;YAC1D,CAAC;YAED,oBAAC,IAAI,OAAG,CACG,CACT,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,MAAM;IACb,OAAO,6BAAK,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,GAAI,CAAA;AACpC,CAAC;AAED,eAAe,MAAM,CAAA"}

package/dist/components/header/HeaderMenuExtra.js

@@ -67,7 +67,10 @@ const HeaderMenuExtra = observer(({ model }) => {
                         onClick: () => {
                             model.queueDialog(handleClose => [
                                 UserProvidedDomainsDialog,
-                                { handleClose, model },
+                                {
+                                    handleClose,
+                                    model,
+                                },
                             ]);
                         },
                     },
@@ -108,7 +111,10 @@ const HeaderMenuExtra = observer(({ model }) => {
                         onClick: () => {
                             model.queueDialog(onClose => [
                                 FeatureFilterDialog,
-                                { onClose, model },
+                                {
+                                    onClose,
+                                    model,
+                                },
                             ]);
                         },
                     },

package/dist/components/header/HeaderMenuExtra.js.map

@@ -1 +1 @@
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package/dist/components/header/ZoomControls.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../../model';
+import type { MsaViewModel } from '../../model';
 declare const ZoomControls: ({ model, }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/header/ZoomControls.js

@@ -1,12 +1,8 @@
 import React from 'react';
-import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
-import MoreVert from '@mui/icons-material/MoreVert';
-import RestartAlt from '@mui/icons-material/RestartAlt';
 import ZoomIn from '@mui/icons-material/ZoomIn';
 import ZoomOut from '@mui/icons-material/ZoomOut';
 import { IconButton } from '@mui/material';
 import { observer } from 'mobx-react';
-// icons
 const ZoomControls = observer(function ZoomControls({ model, }) {
     return (React.createElement(React.Fragment, null,
         React.createElement(IconButton, { onClick: () => {
@@ -16,48 +12,7 @@ const ZoomControls = observer(function ZoomControls({ model, }) {
         React.createElement(IconButton, { onClick: () => {
                 model.zoomOut();
             } },
-            React.createElement(ZoomOut, null)),
-        React.createElement(CascadingMenuButton, { menuItems: [
-                {
-                    label: 'Zoom in horizontal',
-                    onClick: () => {
-                        model.zoomInHorizontal();
-                    },
-                },
-                {
-                    label: 'Zoom in vertical',
-                    onClick: () => {
-                        model.zoomInVertical();
-                    },
-                },
-                {
-                    label: 'Zoom out horizontal',
-                    onClick: () => {
-                        model.zoomOutHorizontal();
-                    },
-                },
-                {
-                    label: 'Zoom out vertical',
-                    onClick: () => {
-                        model.zoomOutVertical();
-                    },
-                },
-                {
-                    label: 'Show entire view',
-                    onClick: () => {
-                        model.showEntire();
-                    },
-                },
-                {
-                    label: 'Reset zoom to default',
-                    icon: RestartAlt,
-                    onClick: () => {
-                        model.setColWidth(16);
-                        model.setRowHeight(20);
-                    },
-                },
-            ] },
-            React.createElement(MoreVert, null))));
+            React.createElement(ZoomOut, null))));
 });
 export default ZoomControls;
 //# sourceMappingURL=ZoomControls.js.map

package/dist/components/header/ZoomControls.js.map

@@ -1 +1 @@
-{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,QAAQ;AAER,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;YAChB,CAAC;YAED,oBAAC,MAAM,OAAG,CACC;QACb,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;YACjB,CAAC;YAED,oBAAC,OAAO,OAAG,CACA;QACb,oBAAC,mBAAmB,IAClB,SAAS,EAAE;gBACT;oBACE,KAAK,EAAE,oBAAoB;oBAC3B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,gBAAgB,EAAE,CAAA;oBAC1B,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,kBAAkB;oBACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,cAAc,EAAE,CAAA;oBACxB,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,qBAAqB;oBAC5B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;oBAC3B,CAAC;iBACF;gBAED;oBACE,KAAK,EAAE,mBAAmB;oBAC1B,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,eAAe,EAAE,CAAA;oBACzB,CAAC;iBACF;gBAED;oBACE,KAAK,EAAE,kBAAkB;oBACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,UAAU,EAAE,CAAA;oBACpB,CAAC;iBACF;gBACD;oBACE,KAAK,EAAE,uBAAuB;oBAC9B,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,GAAG,EAAE;wBACZ,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACrB,KAAK,CAAC,YAAY,CAAC,EAAE,CAAC,CAAA;oBACxB,CAAC;iBACF;aACF;YAED,oBAAC,QAAQ,OAAG,CACQ,CACrB,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}
+{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/components/header/ZoomControls.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,MAAM,MAAM,4BAA4B,CAAA;AAC/C,OAAO,OAAO,MAAM,6BAA6B,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,YAAY,CAAC,EAClD,KAAK,GAGN;IACC,OAAO,CACL;QACE,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,MAAM,EAAE,CAAA;YAChB,CAAC;YAED,oBAAC,MAAM,OAAG,CACC;QACb,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,OAAO,EAAE,CAAA;YACjB,CAAC;YAED,oBAAC,OAAO,OAAG,CACA,CACZ,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AACF,eAAe,YAAY,CAAA"}

package/dist/components/header/ZoomMenu.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+import type { MsaViewModel } from '../../model';
+declare const ZoomMenu: ({ model }: {
+    model: MsaViewModel;
+}) => React.JSX.Element;
+export default ZoomMenu;

package/dist/components/header/ZoomMenu.js

@@ -0,0 +1,33 @@
+import React from 'react';
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
+import MoreVert from '@mui/icons-material/MoreVert';
+import RestartAlt from '@mui/icons-material/RestartAlt';
+import { observer } from 'mobx-react';
+const ZoomMenu = observer(function ({ model }) {
+    return (React.createElement(CascadingMenuButton, { menuItems: [
+            {
+                label: 'Fit to view',
+                onClick: () => {
+                    model.showEntire();
+                },
+            },
+            {
+                label: 'Reset zoom to default',
+                icon: RestartAlt,
+                onClick: () => {
+                    model.resetZoom();
+                },
+            },
+            {
+                label: 'Show extra zoom options',
+                checked: model.showZoomStar,
+                type: 'checkbox',
+                onClick: () => {
+                    model.setShowZoomStar(!model.showZoomStar);
+                },
+            },
+        ] },
+        React.createElement(MoreVert, null)));
+});
+export default ZoomMenu;
+//# sourceMappingURL=ZoomMenu.js.map

package/dist/components/header/ZoomMenu.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ZoomMenu.js","sourceRoot":"","sources":["../../../src/components/header/ZoomMenu.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,mBAAmB,MAAM,sCAAsC,CAAA;AACtE,OAAO,QAAQ,MAAM,8BAA8B,CAAA;AACnD,OAAO,UAAU,MAAM,gCAAgC,CAAA;AACvD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACpE,OAAO,CACL,oBAAC,mBAAmB,IAClB,SAAS,EAAE;YACT;gBACE,KAAK,EAAE,aAAa;gBACpB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,UAAU,EAAE,CAAA;gBACpB,CAAC;aACF;YACD;gBACE,KAAK,EAAE,uBAAuB;gBAC9B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,SAAS,EAAE,CAAA;gBACnB,CAAC;aACF;YACD;gBACE,KAAK,EAAE,yBAAyB;gBAChC,OAAO,EAAE,KAAK,CAAC,YAAY;gBAC3B,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,GAAG,EAAE;oBACZ,KAAK,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC,CAAA;gBAC5C,CAAC;aACF;SACF;QAED,oBAAC,QAAQ,OAAG,CACQ,CACvB,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/header/ZoomStar.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+import type { MsaViewModel } from '../../model';
+declare const ZoomStar: ({ model }: {
+    model: MsaViewModel;
+}) => React.JSX.Element;
+export default ZoomStar;

package/dist/components/header/ZoomStar.js

@@ -0,0 +1,40 @@
+import React from 'react';
+import { IconButton } from '@mui/material';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+import { RestartAlt } from '@mui/icons-material';
+const useStyles = makeStyles()(theme => ({
+    dpad: {
+        display: 'grid',
+        gridTemplateColumns: 'repeat(3, 1fr)',
+    },
+    icon: {
+        padding: theme.spacing(0.5),
+    },
+}));
+const ZoomStar = observer(function ({ model }) {
+    const { classes } = useStyles();
+    return (React.createElement("div", { className: classes.dpad },
+        React.createElement("div", null),
+        React.createElement(IconButton, { className: classes.icon, onClick: () => {
+                model.zoomInVertical();
+            } }, "Y+"),
+        React.createElement("div", null),
+        React.createElement(IconButton, { className: classes.icon, onClick: () => {
+                model.zoomOutHorizontal();
+            } }, "X-"),
+        React.createElement(IconButton, { className: classes.icon, onClick: () => {
+                model.resetZoom();
+            } },
+            React.createElement(RestartAlt, null)),
+        React.createElement(IconButton, { className: classes.icon, onClick: () => {
+                model.zoomInHorizontal();
+            } }, "X+"),
+        React.createElement("div", null),
+        React.createElement(IconButton, { className: classes.icon, onClick: () => {
+                model.zoomOutVertical();
+            } }, "Y-"),
+        React.createElement("div", null)));
+});
+export default ZoomStar;
+//# sourceMappingURL=ZoomStar.js.map

package/dist/components/header/ZoomStar.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"ZoomStar.js","sourceRoot":"","sources":["../../../src/components/header/ZoomStar.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAIhD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,OAAO,EAAE,MAAM;QACf,mBAAmB,EAAE,gBAAgB;KACtC;IACD,IAAI,EAAE;QACJ,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,gCAAO;QACP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,cAAc,EAAE,CAAA;YACxB,CAAC,SAGU;QACb,gCAAO;QAEP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,iBAAiB,EAAE,CAAA;YAC3B,CAAC,SAGU;QACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,SAAS,EAAE,CAAA;YACnB,CAAC;YAED,oBAAC,UAAU,OAAG,CACH;QACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,gBAAgB,EAAE,CAAA;YAC1B,CAAC,SAGU;QAEb,gCAAO;QACP,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,KAAK,CAAC,eAAe,EAAE,CAAA;YACzB,CAAC,SAGU;QACb,gCAAO,CACH,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/tree/renderTreeCanvas.js

@@ -3,9 +3,10 @@ const extendBounds = 5;
 const radius = 2.5;
 const d = radius * 2;
 export function renderTree({ offsetY, ctx, model, theme, blockSizeYOverride, }) {
-    const { hierarchy, showBranchLen, blockSize } = model;
+    const { hierarchy, allBranchesLength0, showBranchLen: showBranchLenPre, blockSize, } = model;
     const by = blockSizeYOverride || blockSize;
     ctx.strokeStyle = theme.palette.text.primary;
+    const showBranchLen = allBranchesLength0 ? false : showBranchLenPre;
     for (const link of hierarchy.links()) {
         const { source, target } = link;
         if (target.height === 0 && !showBranchLen) {
@@ -32,8 +33,9 @@ export function renderTree({ offsetY, ctx, model, theme, blockSizeYOverride, })
     }
 }
 export function renderNodeBubbles({ ctx, clickMap, offsetY, model, blockSizeYOverride, }) {
-    const { hierarchy, showBranchLen, collapsed, blockSize, marginLeft: ml, } = model;
+    const { hierarchy, showBranchLen: showBranchLenPre, allBranchesLength0, collapsed, blockSize, marginLeft: ml, } = model;
     const by = blockSizeYOverride || blockSize;
+    const showBranchLen = allBranchesLength0 ? false : showBranchLenPre;
     for (const node of hierarchy.descendants()) {
         const val = showBranchLen ? 'len' : 'y';
         // @ts-expect-error
@@ -62,7 +64,7 @@ export function renderNodeBubbles({ ctx, clickMap, offsetY, model, blockSizeYOve
     }
 }
 export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSizeYOverride, }) {
-    const { fontSize, showBranchLen, treeMetadata, hierarchy, collapsed, collapsedLeaves, blockSize, labelsAlignRight, drawTree, treeAreaWidth, treeWidth, treeAreaWidthMinusMargin, marginLeft, leaves, noTree, } = model;
+    const { fontSize, showBranchLen: showBranchLenPre, allBranchesLength0, treeMetadata, hierarchy, collapsed, collapsedLeaves, blockSize, labelsAlignRight, drawTree, treeAreaWidth, treeWidth, treeAreaWidthMinusMargin, marginLeft, leaves, noTree, } = model;
     const by = blockSizeYOverride || blockSize;
     if (labelsAlignRight) {
         ctx.textAlign = 'right';
@@ -71,6 +73,7 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
     else {
         ctx.textAlign = 'start';
     }
+    const showBranchLen = allBranchesLength0 ? false : showBranchLenPre;
     for (const node of leaves) {
         const { data: { name, id }, 
         // @ts-expect-error

package/dist/components/tree/renderTreeCanvas.js.map

@@ -1 +1 @@
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package/dist/flatToTree.d.ts

@@ -0,0 +1,17 @@
+interface FlatItem {
+    id: number;
+    parent?: number;
+}
+interface TreeNode {
+    id: string;
+    name: string;
+    parent?: string;
+    children: TreeNode[];
+}
+/**
+ * Parses a flat list of items into a tree structure
+ * @param items - Array of flat items with id and optional parent
+ * @returns Array of root tree nodes
+ */
+export declare function flatToTree(items: FlatItem[]): TreeNode;
+export {};

package/dist/flatToTree.js

@@ -0,0 +1,41 @@
+/**
+ * Parses a flat list of items into a tree structure
+ * @param items - Array of flat items with id and optional parent
+ * @returns Array of root tree nodes
+ */
+export function flatToTree(items) {
+    // Create a map to store all nodes by their id for quick lookup
+    const nodeMap = new Map();
+    // First pass: Create all tree nodes
+    items.forEach(item => {
+        nodeMap.set(item.id, {
+            ...item,
+            id: `${item.id}`,
+            name: `${item.id}`,
+            parent: item.parent !== undefined ? `${item.parent}` : undefined,
+            children: [],
+        });
+    });
+    // Second pass: Build parent-child relationships
+    const roots = [];
+    items.forEach(item => {
+        const node = nodeMap.get(item.id);
+        if (item.parent !== undefined) {
+            // This item has a parent, add it to parent's children
+            const parentNode = nodeMap.get(item.parent);
+            if (parentNode) {
+                parentNode.children.push(node);
+            }
+            else {
+                // Parent doesn't exist, treat as root
+                roots.push(node);
+            }
+        }
+        else {
+            // This item has no parent, it's a root node
+            roots.push(node);
+        }
+    });
+    return roots[0];
+}
+//# sourceMappingURL=flatToTree.js.map

package/dist/flatToTree.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"flatToTree.js","sourceRoot":"","sources":["../src/flatToTree.ts"],"names":[],"mappings":"AAcA;;;;GAIG;AACH,MAAM,UAAU,UAAU,CAAC,KAAiB;IAC1C,+DAA+D;IAC/D,MAAM,OAAO,GAAG,IAAI,GAAG,EAAoB,CAAA;IAE3C,oCAAoC;IACpC,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;QACnB,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,EAAE;YACnB,GAAG,IAAI;YACP,EAAE,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE;YAChB,IAAI,EAAE,GAAG,IAAI,CAAC,EAAE,EAAE;YAClB,MAAM,EAAE,IAAI,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,SAAS;YAChE,QAAQ,EAAE,EAAE;SACb,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;IAEF,gDAAgD;IAChD,MAAM,KAAK,GAAe,EAAE,CAAA;IAE5B,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE;QACnB,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAE,CAAA;QAElC,IAAI,IAAI,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;YAC9B,sDAAsD;YACtD,MAAM,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;YAC3C,IAAI,UAAU,EAAE,CAAC;gBACf,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAChC,CAAC;iBAAM,CAAC;gBACN,sCAAsC;gBACtC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAClB,CAAC;QACH,CAAC;aAAM,CAAC;YACN,4CAA4C;YAC5C,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClB,CAAC;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,KAAK,CAAC,CAAC,CAAE,CAAA;AAClB,CAAC"}

package/dist/model.d.ts

@@ -1,35 +1,13 @@
-import React from 'react';
 import ClustalMSA from './parsers/ClustalMSA';
 import EmfMSA from './parsers/EmfMSA';
 import FastaMSA from './parsers/FastaMSA';
 import StockholmMSA from './parsers/StockholmMSA';
 import type { InterProScanResults } from './launchInterProScan';
-import type { NodeWithIds, NodeWithIdsAndLength } from './util';
+import type { Accession, BasicTrack, NodeWithIds, NodeWithIdsAndLength } from './types';
 import type { FileLocation as FileLocationType } from '@jbrowse/core/util/types';
 import type { Theme } from '@mui/material';
 import type { HierarchyNode } from 'd3-hierarchy';
 import type { Instance } from 'mobx-state-tree';
-export interface Accession {
-    accession: string;
-    name: string;
-    description: string;
-}
-export interface BasicTrackModel {
-    id: string;
-    name: string;
-    associatedRowName?: string;
-    height: number;
-}
-export interface TextTrackModel extends BasicTrackModel {
-    customColorScheme?: Record<string, string>;
-    data: string;
-}
-export interface ITextTrack {
-    ReactComponent: React.FC<any>;
-    model: TextTrackModel;
-}
-export type BasicTrack = ITextTrack;
-export declare function isGzip(buf: Uint8Array): boolean;
 /**
  * #stateModel MsaView
  * extends
@@ -275,6 +253,11 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
      * screens
      */
     highResScaleFactor: number;
+    /**
+     * #volatile
+     * obtained from localStorage
+     */
+    showZoomStar: boolean;
     /**
      * #volatile
      */
@@ -367,6 +350,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
      * #action
      */
     setLoadingMSA(arg: boolean): void;
+    /**
+     * #volatile
+     */
+    setShowZoomStar(arg: boolean): void;
     /**
      * #action
      */
@@ -604,6 +591,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
      * #getter
      */
     readonly leaves: HierarchyNode<NodeWithIdsAndLength>[];
+    /**
+     * #getter
+     */
+    readonly allBranchesLength0: boolean;
 } & {
     /**
      * #getter
@@ -648,6 +639,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
      * #action
      */
     setDrawMsaLetters(arg: boolean): void;
+    /**
+     * #action
+     */
+    resetZoom(): void;
     /**
      * #action
      */
@@ -727,7 +722,7 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
     /**
      * #getter
      */
-    readonly turnedOnTracks: ITextTrack[];
+    readonly turnedOnTracks: import("./types").ITextTrack[];
     /**
      * #getter
      */