react-msaview 4.0.3 → 4.1.1

package/dist/renderToSvg.js.map

@@ -1 +1 @@
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package/dist/rowCoordinateCalculations.test.js.map

@@ -1 +1 @@
-{"version":3,"file":"rowCoordinateCalculations.test.js","sourceRoot":"","sources":["../src/rowCoordinateCalculations.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AACrC,OAAO,EAAE,2BAA2B,EAAE,MAAM,6BAA6B,CAAA;AACzE,IAAI,CAAC,SAAS,EAAE,GAAG,EAAE;IACnB,MAAM,MAAM,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CACvB;IACC;QACE,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,EAAE,CAAC;KAEV,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;QACZ,MAAM,CAAC,2BAA2B,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAC9D,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}
+{"version":3,"file":"rowCoordinateCalculations.test.js","sourceRoot":"","sources":["../src/rowCoordinateCalculations.test.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAErC,OAAO,EAAE,2BAA2B,EAAE,MAAM,6BAA6B,CAAA;AACzE,IAAI,CAAC,SAAS,EAAE,GAAG,EAAE;IACnB,MAAM,MAAM,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CACvB;IACC;QACE,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,EAAE,EAAE,CAAC;KAEV,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;QACZ,MAAM,CAAC,2BAA2B,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;IAC9D,CAAC,CAAC,CAAA;AACJ,CAAC,CAAC,CAAA"}

package/dist/util.d.ts

@@ -1,5 +1,5 @@
-import type { HierarchyNode } from 'd3-hierarchy';
 import type { Theme } from '@mui/material';
+import type { HierarchyNode } from 'd3-hierarchy';
 export declare function transform<T>(obj: Record<string, T>, cb: (arg0: [string, T]) => [string, T]): {
     [k: string]: T;
 };

package/dist/util.js

@@ -1,6 +1,6 @@
-import { max } from 'd3-array';
 import { colord, extend } from 'colord';
 import namesPlugin from 'colord/plugins/names';
+import { max } from 'd3-array';
 extend([namesPlugin]);
 export function transform(obj, cb) {
     return Object.fromEntries(Object.entries(obj).map(cb));

package/dist/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAC9C,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAK9B,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;AAErB,MAAM,UAAU,SAAS,CACvB,GAAsB,EACtB,EAAsC;IAEtC,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;AACxD,CAAC;AAwBD,MAAM,UAAU,eAAe,CAC7B,IAAU,EACV,MAAM,GAAG,MAAM,EACf,KAAK,GAAG,CAAC;IAET,MAAM,EAAE,GAAG,GAAG,MAAM,IAAI,KAAK,EAAE,CAAA;IAE/B,OAAO;QACL,GAAG,IAAI;QACP,EAAE;QACF,IAAI,EAAE,IAAI,CAAC,IAAI,IAAI,EAAE;QACrB,QAAQ,EACN,IAAI,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAC1B,eAAe,CAAC,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,EAAE,EAAE,KAAK,GAAG,CAAC,CAAC,CAC5C,IAAI,EAAE;KACV,CAAA;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,WAAmC,EACnC,KAAY;IAEZ,OAAO,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;QACjD,MAAM;QACN,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;KACrD,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,MAAgB,EAAE,GAAsB;IACjE,IAAI,CAAC,GAAG,EAAE,CAAA;IACV,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACpC,IAAI,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;YACpB,CAAC,EAAE,CAAA;QACL,CAAC;aAAM,CAAC;YACN,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAA;QACb,CAAC;IACH,CAAC;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CACzB,CAA6B,EAC7B,EAAU,EACV,CAAS;IAET,mBAAmB;IACnB,CAAC,CAAC,GAAG,GAAG,CAAC,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;IAEnD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;YACrB,WAAW,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;QACvB,CAAC,CAAC,CAAA;IACJ,CAAC;AACH,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,SAAS,CAAC,CAA6B;IACrD,OAAO,CACL,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC1E,CAAA;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,CAA6B;IACpD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,mBAAmB;QACnB,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,QAAQ,CAAA;QACxB,mBAAmB;QACnB,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAA;IACnB,CAAC;AACH,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,GAAW,EAAE,GAAW,EAAE,GAAW;IACzD,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,CAAC,CAAA;AAC1C,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,CAAiC;IACnD,OAAO,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,CAAA;AACxB,CAAC"}

package/dist/version.d.ts

@@ -1 +1 @@
-export declare const version = "4.0.3";
+export declare const version = "4.1.1";

package/dist/version.js

@@ -1,2 +1,2 @@
-export const version = '4.0.3';
+export const version = '4.1.1';
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "react-msaview",
   "author": "Colin",
-  "version": "4.0.3",
+  "version": "4.1.1",
   "license": "MIT",
   "main": "dist/index.js",
   "module": "dist/index.js",
@@ -23,7 +23,7 @@
     "build": "npm run build:esm && npm run build:bundle",
     "prepack": "npm run build",
     "postversion": "git push --follow-tags",
-    "statedocs": "rm -rf apidocs && mkdir apidocs && yarn tsx docgen/generateStateModelDocs.ts",
+    "statedocs": "rm -rf apidocs && mkdir apidocs && node --experimental-strip-types docgen/generateStateModelDocs.ts",
     "poststatedocs": "npm run format"
   },
   "peerDependencies": {
@@ -37,8 +37,8 @@
     "react-dom": ">=16.8.0"
   },
   "dependencies": {
-    "@mui/icons-material": "^6.0.2",
-    "@mui/material": "^6.0.2",
+    "@mui/icons-material": "^7.0.1",
+    "@mui/material": "^7.0.1",
     "clustal-js": "^2.0.0",
     "colord": "^2.9.3",
     "copy-to-clipboard": "^3.3.1",

package/src/colorSchemes.ts

@@ -1,6 +1,7 @@
+import { blue, green, orange, red } from '@mui/material/colors'
 import { colord, extend } from 'colord'
 import namesPlugin from 'colord/plugins/names'
-import { blue, green, red, orange } from '@mui/material/colors'
+
 import { transform } from './util'
 
 extend([namesPlugin])

package/src/components/Checkbox2.tsx

@@ -1,4 +1,5 @@
 import React from 'react'
+
 import {
   Checkbox,
   FormControlLabel,

package/src/components/Loading.tsx

@@ -1,12 +1,13 @@
 import React from 'react'
-import { observer } from 'mobx-react'
-import { Button, Typography } from '@mui/material'
-import { ErrorBoundary } from '@jbrowse/core/ui/ErrorBoundary'
+
 import { ErrorMessage } from '@jbrowse/core/ui'
+import { ErrorBoundary } from '@jbrowse/core/ui/ErrorBoundary'
+import { Button, Typography } from '@mui/material'
+import { observer } from 'mobx-react'
 
-// locals
-import ImportForm from './import/ImportForm'
 import MSAView from './MSAView'
+import ImportForm from './import/ImportForm'
+
 import type { MsaViewModel } from '../model'
 
 const Reset = observer(function ({

package/src/components/MSAView.tsx

@@ -1,15 +1,16 @@
 import React, { Suspense } from 'react'
+
 import { observer } from 'mobx-react'
 
-// locals
 import { HorizontalResizeHandle, VerticalResizeHandle } from './ResizeHandles'
-import type { MsaViewModel } from '../model'
-import TreeRuler from './tree/TreeRuler'
+import VerticalScrollbar from './VerticalScrollbar'
 import Header from './header/Header'
+import Minimap from './minimap/Minimap'
 import MSAPanel from './msa/MSAPanel'
 import TreePanel from './tree/TreePanel'
-import Minimap from './minimap/Minimap'
-import VerticalScrollbar from './VerticalScrollbar'
+import TreeRuler from './tree/TreeRuler'
+
+import type { MsaViewModel } from '../model'
 
 const TopArea = observer(function ({ model }: { model: MsaViewModel }) {
   const { showHorizontalScrollbar } = model

package/src/components/ResizeHandles.tsx

@@ -1,7 +1,7 @@
 import React, { useEffect, useRef, useState } from 'react'
+
 import { observer } from 'mobx-react'
 
-// locals
 import type { MsaViewModel } from '../model'
 
 export const VerticalResizeHandle = observer(function ({

package/src/components/SequenceTextArea.tsx

@@ -1,9 +1,9 @@
 import React, { useState } from 'react'
+
 import { Button, TextField } from '@mui/material'
-import { makeStyles } from 'tss-react/mui'
 import copy from 'copy-to-clipboard'
+import { makeStyles } from 'tss-react/mui'
 
-// locals
 import Checkbox2 from './Checkbox2'
 
 const useStyles = makeStyles()({

package/src/components/TextTrack.tsx

@@ -1,10 +1,12 @@
-import React, { useRef, useMemo, useEffect } from 'react'
+import React, { useEffect, useMemo, useRef } from 'react'
+
 import { useTheme } from '@mui/material'
 import { observer } from 'mobx-react'
-// locals
-import type { MsaViewModel, ITextTrack } from '../model'
+
 import { colorContrast } from '../util'
 
+import type { ITextTrack, MsaViewModel } from '../model'
+
 const AnnotationBlock = observer(function ({
   track,
   model,

package/src/components/Track.tsx

@@ -1,13 +1,13 @@
-import React, { useState, useRef, useEffect, lazy } from 'react'
-import normalizeWheel from 'normalize-wheel'
-import { observer } from 'mobx-react'
+import React, { lazy, useEffect, useRef, useState } from 'react'
+
+import ArrowDropDownIcon from '@mui/icons-material/ArrowDropDown'
 import { IconButton, Menu, MenuItem } from '@mui/material'
+import { observer } from 'mobx-react'
+import normalizeWheel from 'normalize-wheel'
 import { makeStyles } from 'tss-react/mui'
 
 // icons
-import ArrowDropDownIcon from '@mui/icons-material/ArrowDropDown'
 
-// locals
 import type { MsaViewModel } from '../model'
 
 // lazies

package/src/components/VerticalScrollbar.tsx

@@ -1,8 +1,11 @@
-import { observer } from 'mobx-react'
 import React, { useEffect, useRef, useState } from 'react'
-import type { MsaViewModel } from '../model'
+
+import { observer } from 'mobx-react'
+
 import { clamp } from '../util'
 
+import type { MsaViewModel } from '../model'
+
 const VerticalScrollbar = observer(({ model }: { model: MsaViewModel }) => {
   const { msaAreaHeight, scrollY, totalHeight } = model
   const [hovered, setHovered] = useState(false)

package/src/components/dialogs/AboutDialog.tsx

@@ -1,24 +1,23 @@
 import React from 'react'
+
 import { Dialog } from '@jbrowse/core/ui'
-import { DialogContent, Typography, Link } from '@mui/material'
+import { DialogContent, Link, Typography } from '@mui/material'
+
 import { version } from '../../version'
 
 export default function AboutDialog({ onClose }: { onClose: () => void }) {
   return (
     <Dialog
+      open
+      title="About"
       onClose={() => {
         onClose()
       }}
-      open
-      title="About this plugin"
     >
       <DialogContent>
         <Typography>
           MSAView {version} (
-          <Link href="https://github.com/gmod/jbrowse-plugin-msaview">
-            Github
-          </Link>
-          )
+          <Link href="https://github.com/gmod/react-msaview">Github</Link>)
         </Typography>
 
         <ul>

package/src/components/dialogs/AddTrackDialog.tsx

@@ -1,16 +1,18 @@
 import React, { useState } from 'react'
+
+import { Dialog, FileSelector } from '@jbrowse/core/ui'
 import {
-  DialogContent,
-  DialogActions,
   Button,
-  TextField,
+  DialogActions,
+  DialogContent,
   MenuItem,
+  TextField,
   Typography,
 } from '@mui/material'
-import { Dialog, FileSelector } from '@jbrowse/core/ui'
-import type { FileLocation } from '@jbrowse/core/util/types'
 import { observer } from 'mobx-react'
+
 import type { MsaViewModel } from '../../model'
+import type { FileLocation } from '@jbrowse/core/util/types'
 
 const AddTrackDialog = observer(function ({
   model,

package/src/components/dialogs/DomainDialog.tsx

@@ -1,11 +1,12 @@
 import React, { useState } from 'react'
+
 import { Dialog } from '@jbrowse/core/ui'
 import { Tab, Tabs } from '@mui/material'
 
-// locals
 import InterProScanPanel from './InterProScanDialog'
-import UserProvidedResultPanel from './UserProvidedDomainsDialog'
 import TabPanel from './TabPanel'
+import UserProvidedResultPanel from './UserProvidedDomainsDialog'
+
 import type { MsaViewModel } from '../../model'
 
 export default function LaunchDomainViewDialog({

package/src/components/dialogs/ExportSVGDialog.tsx

@@ -1,21 +1,23 @@
 import React, { useState } from 'react'
+
 import { Dialog, ErrorMessage } from '@jbrowse/core/ui'
 import {
   Button,
-  DialogContent,
   DialogActions,
-  FormControlLabel,
+  DialogContent,
   FormControl,
+  FormControlLabel,
   FormLabel,
-  RadioGroup,
   Radio,
+  RadioGroup,
   Typography,
   useTheme,
 } from '@mui/material'
-// locals
-import type { MsaViewModel } from '../../model'
+
 import Checkbox2 from '../Checkbox2'
 
+import type { MsaViewModel } from '../../model'
+
 export default function ExportSVGDialog({
   model,
   onClose,

package/src/components/dialogs/FeatureDialog.tsx

@@ -1,12 +1,13 @@
 import React from 'react'
-import { observer } from 'mobx-react'
+
 import { Dialog } from '@jbrowse/core/ui'
 import { Button, DialogContent } from '@mui/material'
+import { observer } from 'mobx-react'
 
-// locals
-import type { MsaViewModel } from '../../model'
 import { getPalette } from '../../ggplotPalettes'
 
+import type { MsaViewModel } from '../../model'
+
 const Toggles = observer(function ({ model }: { model: MsaViewModel }) {
   const { featureFilters } = model
   return (

package/src/components/dialogs/InterProScanDialog.tsx

@@ -1,12 +1,13 @@
 import React, { useState } from 'react'
-import { observer } from 'mobx-react'
-import { Button, DialogActions, DialogContent, Typography } from '@mui/material'
 
-// locals
-import type { MsaViewModel } from '../../model'
+import { Dialog } from '@jbrowse/core/ui'
 import { getSession } from '@jbrowse/core/util'
+import { Button, DialogActions, DialogContent, Typography } from '@mui/material'
+import { observer } from 'mobx-react'
+
 import { launchInterProScan } from '../../launchInterProScan'
-import { Dialog } from '@jbrowse/core/ui'
+
+import type { MsaViewModel } from '../../model'
 
 const InterProScanDialog = observer(function ({
   handleClose,

package/src/components/dialogs/MetadataDialog.tsx

@@ -1,15 +1,15 @@
 import React from 'react'
-import { DialogContent } from '@mui/material'
-import { observer } from 'mobx-react'
-import { Dialog } from '@jbrowse/core/ui'
 
 import Attributes from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes'
 import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard'
+import { Dialog } from '@jbrowse/core/ui'
+import { DialogContent } from '@mui/material'
+import { observer } from 'mobx-react'
 
-// locals
-import type { MsaViewModel } from '../../model'
 import SequenceTextArea from '../SequenceTextArea'
 
+import type { MsaViewModel } from '../../model'
+
 const MetadataDialog = observer(function ({
   model,
   onClose,

package/src/components/dialogs/SettingsDialog.tsx

@@ -1,6 +1,5 @@
 import React from 'react'
-import { observer } from 'mobx-react'
-import { makeStyles } from 'tss-react/mui'
+
 import { Dialog } from '@jbrowse/core/ui'
 import {
   Button,
@@ -11,11 +10,14 @@ import {
   TextField,
   Typography,
 } from '@mui/material'
+import { observer } from 'mobx-react'
+import { makeStyles } from 'tss-react/mui'
 
-import type { MsaViewModel } from '../../model'
 import colorSchemes from '../../colorSchemes'
 import Checkbox2 from '../Checkbox2'
 
+import type { MsaViewModel } from '../../model'
+
 const useStyles = makeStyles()(theme => ({
   field: {
     margin: theme.spacing(4),
@@ -113,7 +115,7 @@ const TreeSettings = observer(function TreeSettings({
                 max={600}
                 value={treeWidth}
                 onChange={(_, val) => {
-                  model.setTreeWidth(val as number)
+                  model.setTreeWidth(val)
                 }}
               />
             </div>
@@ -174,16 +176,14 @@ const MSASettings = observer(function MSASettings({
       />
       {hideGaps ? (
         <div className={classes.flex}>
-          <Typography>
-            Hide columns with more than {allowedGappyness}% gaps
-          </Typography>
+          <Typography>Hide columns w/ &gt;{allowedGappyness}% gaps</Typography>
           <Slider
             className={classes.field}
             min={1}
             max={100}
             value={allowedGappyness}
             onChange={(_, val) => {
-              model.setAllowedGappyness(val as number)
+              model.setAllowedGappyness(val)
             }}
           />
         </div>
@@ -196,7 +196,7 @@ const MSASettings = observer(function MSASettings({
           max={50}
           value={colWidth}
           onChange={(_, val) => {
-            model.setColWidth(val as number)
+            model.setColWidth(val)
           }}
         />
       </div>
@@ -208,7 +208,7 @@ const MSASettings = observer(function MSASettings({
           max={50}
           value={rowHeight}
           onChange={(_, val) => {
-            model.setRowHeight(val as number)
+            model.setRowHeight(val)
           }}
         />
       </div>

package/src/components/dialogs/TrackInfoDialog.tsx

@@ -1,8 +1,9 @@
 import React, { useState } from 'react'
-import copy from 'copy-to-clipboard'
-import { observer } from 'mobx-react'
+
 import { Dialog } from '@jbrowse/core/ui'
 import { Button, DialogActions, DialogContent } from '@mui/material'
+import copy from 'copy-to-clipboard'
+import { observer } from 'mobx-react'
 import { makeStyles } from 'tss-react/mui'
 
 const useStyles = makeStyles()(theme => ({

package/src/components/dialogs/TracklistDialog.tsx

@@ -1,17 +1,17 @@
 import React from 'react'
+
 import { Dialog } from '@jbrowse/core/ui'
 import {
+  Button,
+  Checkbox,
+  DialogActions,
   DialogContent,
   FormControlLabel,
   FormGroup,
-  Checkbox,
-  DialogActions,
-  Button,
   Typography,
 } from '@mui/material'
 import { observer } from 'mobx-react'
 
-// locals
 import type { MsaViewModel } from '../../model'
 
 const TracklistDialog = observer(function ({

package/src/components/dialogs/UserProvidedDomainsDialog.tsx

@@ -1,23 +1,24 @@
 import React, { useState } from 'react'
-import { observer } from 'mobx-react'
+
+import { Dialog } from '@jbrowse/core/ui'
+import { getSession } from '@jbrowse/core/util'
 import {
   Button,
   DialogActions,
   DialogContent,
-  FormControlLabel,
   FormControl,
+  FormControlLabel,
   Radio,
   RadioGroup,
   TextField,
   Typography,
 } from '@mui/material'
-import { getSession } from '@jbrowse/core/util'
-import { Dialog } from '@jbrowse/core/ui'
+import { observer } from 'mobx-react'
 
-// locals
-import type { MsaViewModel } from '../../model'
 import { jsonfetch } from '../../fetchUtils'
+
 import type { InterProScanResponse } from '../../launchInterProScan'
+import type { MsaViewModel } from '../../model'
 
 const UserProvidedDomainsDialog = observer(function ({
   handleClose,

package/src/components/header/Header.tsx

@@ -1,20 +1,17 @@
 import React, { lazy, useEffect } from 'react'
-import { IconButton } from '@mui/material'
-import { observer } from 'mobx-react'
-import useMeasure from '@jbrowse/core/util/useMeasure'
-
-// locals
-import type { MsaViewModel } from '../../model'
 
-// icons
+import useMeasure from '@jbrowse/core/util/useMeasure'
 import Help from '@mui/icons-material/Help'
+import { IconButton } from '@mui/material'
+import { observer } from 'mobx-react'
 
-// locals
-import ZoomControls from './ZoomControls'
-import MultiAlignmentSelector from './MultiAlignmentSelector'
 import HeaderInfoArea from './HeaderInfoArea'
-import HeaderStatusArea from './HeaderStatusArea'
 import HeaderMenuExtra from './HeaderMenuExtra'
+import HeaderStatusArea from './HeaderStatusArea'
+import MultiAlignmentSelector from './MultiAlignmentSelector'
+import ZoomControls from './ZoomControls'
+
+import type { MsaViewModel } from '../../model'
 
 const AboutDialog = lazy(() => import('../dialogs/AboutDialog'))
 

package/src/components/header/HeaderInfoArea.tsx

@@ -1,9 +1,9 @@
 import React from 'react'
+
 import { Typography } from '@mui/material'
 import { observer } from 'mobx-react'
 import { makeStyles } from 'tss-react/mui'
 
-// locals
 import type { MsaViewModel } from '../../model'
 
 const useStyles = makeStyles()({

package/src/components/header/HeaderMenu.tsx

@@ -1,15 +1,13 @@
 import React, { lazy } from 'react'
-import { observer } from 'mobx-react'
-import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'
 
-// icons
-import FolderOpen from '@mui/icons-material/FolderOpen'
-import Settings from '@mui/icons-material/Settings'
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'
 import Assignment from '@mui/icons-material/Assignment'
+import FolderOpen from '@mui/icons-material/FolderOpen'
 import List from '@mui/icons-material/List'
 import Menu from '@mui/icons-material/Menu'
+import Settings from '@mui/icons-material/Settings'
+import { observer } from 'mobx-react'
 
-// locals
 import type { MsaViewModel } from '../../model'
 
 // lazies

package/src/components/header/HeaderMenuExtra.tsx

@@ -1,20 +1,18 @@
 import React, { lazy } from 'react'
-import { observer } from 'mobx-react'
-import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'
 
-// icons
-import MoreVert from '@mui/icons-material/Menu'
-import Sort from '@mui/icons-material/Sort'
-import Visibility from '@mui/icons-material/Visibility'
+import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton'
+import Assignment from '@mui/icons-material/Assignment'
 import FilterAlt from '@mui/icons-material/FilterAlt'
-import Search from '@mui/icons-material/Search'
+import FolderOpen from '@mui/icons-material/FolderOpen'
+import List from '@mui/icons-material/List'
+import MoreVert from '@mui/icons-material/Menu'
 import PhotoCamera from '@mui/icons-material/PhotoCamera'
+import Search from '@mui/icons-material/Search'
 import Settings from '@mui/icons-material/Settings'
-import Assignment from '@mui/icons-material/Assignment'
-import List from '@mui/icons-material/List'
-import FolderOpen from '@mui/icons-material/FolderOpen'
+import Sort from '@mui/icons-material/Sort'
+import Visibility from '@mui/icons-material/Visibility'
+import { observer } from 'mobx-react'
 
-// locals
 import type { MsaViewModel } from '../../model'
 
 // lazies

package/src/components/header/HeaderStatusArea.tsx

@@ -1,10 +1,10 @@
 import React from 'react'
+
+import { LoadingEllipses } from '@jbrowse/core/ui'
 import { Typography } from '@mui/material'
 import { observer } from 'mobx-react'
 import { makeStyles } from 'tss-react/mui'
-import { LoadingEllipses } from '@jbrowse/core/ui'
 
-// locals
 import type { MsaViewModel } from '../../model'
 
 const useStyles = makeStyles()({