react-msaview 3.2.0 → 3.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (154) hide show
  1. package/bundle/index.js +12 -12
  2. package/dist/colorSchemes.js +2 -2
  3. package/dist/colorSchemes.js.map +1 -1
  4. package/dist/components/Loading.js +3 -1
  5. package/dist/components/Loading.js.map +1 -1
  6. package/dist/components/ResizeHandles.js +6 -2
  7. package/dist/components/ResizeHandles.js.map +1 -1
  8. package/dist/components/SequenceTextArea.js +9 -3
  9. package/dist/components/SequenceTextArea.js.map +1 -1
  10. package/dist/components/TextTrack.js +1 -1
  11. package/dist/components/TextTrack.js.map +1 -1
  12. package/dist/components/Track.js +6 -2
  13. package/dist/components/Track.js.map +1 -1
  14. package/dist/components/VerticalScrollbar.js +5 -1
  15. package/dist/components/VerticalScrollbar.js.map +1 -1
  16. package/dist/components/dialogs/AboutDialog.js +3 -1
  17. package/dist/components/dialogs/AboutDialog.js.map +1 -1
  18. package/dist/components/dialogs/AddTrackDialog.d.ts +2 -2
  19. package/dist/components/dialogs/AddTrackDialog.js +8 -3
  20. package/dist/components/dialogs/AddTrackDialog.js.map +1 -1
  21. package/dist/components/dialogs/DomainDialog.js +6 -2
  22. package/dist/components/dialogs/DomainDialog.js.map +1 -1
  23. package/dist/components/dialogs/ExportSVGDialog.js +29 -17
  24. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -1
  25. package/dist/components/dialogs/FeatureDialog.js +8 -4
  26. package/dist/components/dialogs/FeatureDialog.js.map +1 -1
  27. package/dist/components/dialogs/InterProScanDialog.js +23 -9
  28. package/dist/components/dialogs/InterProScanDialog.js.map +1 -1
  29. package/dist/components/dialogs/MetadataDialog.js +3 -1
  30. package/dist/components/dialogs/MetadataDialog.js.map +1 -1
  31. package/dist/components/dialogs/SettingsDialog.js +61 -23
  32. package/dist/components/dialogs/SettingsDialog.js.map +1 -1
  33. package/dist/components/dialogs/TracklistDialog.d.ts +2 -2
  34. package/dist/components/dialogs/TracklistDialog.js +8 -3
  35. package/dist/components/dialogs/TracklistDialog.js.map +1 -1
  36. package/dist/components/dialogs/UserProvidedDomainsDialog.js +10 -4
  37. package/dist/components/dialogs/UserProvidedDomainsDialog.js.map +1 -1
  38. package/dist/components/header/Header.js +3 -1
  39. package/dist/components/header/Header.js.map +1 -1
  40. package/dist/components/header/HeaderInfoArea.js +5 -2
  41. package/dist/components/header/HeaderInfoArea.js.map +1 -1
  42. package/dist/components/header/HeaderMenu.js +12 -4
  43. package/dist/components/header/HeaderMenu.js.map +1 -1
  44. package/dist/components/header/HeaderMenuExtra.js +34 -16
  45. package/dist/components/header/HeaderMenuExtra.js.map +1 -1
  46. package/dist/components/header/ZoomControls.js +18 -6
  47. package/dist/components/header/ZoomControls.js.map +1 -1
  48. package/dist/components/import/ImportForm.d.ts +2 -2
  49. package/dist/components/import/ImportForm.js +15 -2
  50. package/dist/components/import/ImportForm.js.map +1 -1
  51. package/dist/components/import/ImportFormExamples.js +44 -31
  52. package/dist/components/import/ImportFormExamples.js.map +1 -1
  53. package/dist/components/minimap/Minimap.js +12 -4
  54. package/dist/components/minimap/Minimap.js.map +1 -1
  55. package/dist/components/msa/MSACanvasBlock.js +5 -3
  56. package/dist/components/msa/MSACanvasBlock.js.map +1 -1
  57. package/dist/components/msa/MSAMouseoverCanvas.d.ts +1 -1
  58. package/dist/components/msa/MSAMouseoverCanvas.js +1 -1
  59. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -1
  60. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +2 -2
  61. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -1
  62. package/dist/components/msa/renderMSABlock.js +4 -4
  63. package/dist/components/msa/renderMSABlock.js.map +1 -1
  64. package/dist/components/msa/renderMSAMouseover.js +3 -3
  65. package/dist/components/msa/renderMSAMouseover.js.map +1 -1
  66. package/dist/components/tree/TreeBranchMenu.js +6 -3
  67. package/dist/components/tree/TreeBranchMenu.js.map +1 -1
  68. package/dist/components/tree/TreeCanvasBlock.js +11 -4
  69. package/dist/components/tree/TreeCanvasBlock.js.map +1 -1
  70. package/dist/components/tree/TreeNodeMenu.js +1 -1
  71. package/dist/components/tree/TreeNodeMenu.js.map +1 -1
  72. package/dist/components/tree/dialogs/TreeNodeInfoDialog.d.ts +2 -2
  73. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js +5 -2
  74. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map +1 -1
  75. package/dist/components/util.js +0 -3
  76. package/dist/components/util.js.map +1 -1
  77. package/dist/ggplotPalettes.js.map +1 -1
  78. package/dist/launchInterProScan.js +4 -4
  79. package/dist/launchInterProScan.js.map +1 -1
  80. package/dist/model/DialogQueue.js +0 -1
  81. package/dist/model/DialogQueue.js.map +1 -1
  82. package/dist/model.d.ts +57 -22
  83. package/dist/model.js +87 -50
  84. package/dist/model.js.map +1 -1
  85. package/dist/parseGFF.js +8 -6
  86. package/dist/parseGFF.js.map +1 -1
  87. package/dist/parseNewick.js +0 -1
  88. package/dist/parseNewick.js.map +1 -1
  89. package/dist/parsers/ClustalMSA.d.ts +1 -1
  90. package/dist/parsers/ClustalMSA.js.map +1 -1
  91. package/dist/parsers/FastaMSA.js +3 -3
  92. package/dist/parsers/FastaMSA.js.map +1 -1
  93. package/dist/parsers/StockholmMSA.d.ts +6 -6
  94. package/dist/parsers/StockholmMSA.js +4 -4
  95. package/dist/parsers/StockholmMSA.js.map +1 -1
  96. package/dist/renderToSvg.js +3 -6
  97. package/dist/renderToSvg.js.map +1 -1
  98. package/dist/rowCoordinateCalculations.d.ts +2 -0
  99. package/dist/rowCoordinateCalculations.js +26 -0
  100. package/dist/rowCoordinateCalculations.js.map +1 -0
  101. package/dist/rowCoordinateCalculations.test.d.ts +1 -0
  102. package/dist/rowCoordinateCalculations.test.js +18 -0
  103. package/dist/rowCoordinateCalculations.test.js.map +1 -0
  104. package/dist/version.d.ts +1 -1
  105. package/dist/version.js +1 -1
  106. package/package.json +7 -3
  107. package/src/colorSchemes.ts +4 -4
  108. package/src/components/Loading.tsx +7 -1
  109. package/src/components/ResizeHandles.tsx +6 -2
  110. package/src/components/SequenceTextArea.tsx +10 -4
  111. package/src/components/TextTrack.tsx +2 -2
  112. package/src/components/Track.tsx +8 -4
  113. package/src/components/VerticalScrollbar.tsx +6 -2
  114. package/src/components/dialogs/AboutDialog.tsx +7 -1
  115. package/src/components/dialogs/AddTrackDialog.tsx +13 -3
  116. package/src/components/dialogs/DomainDialog.tsx +9 -2
  117. package/src/components/dialogs/ExportSVGDialog.tsx +36 -17
  118. package/src/components/dialogs/FeatureDialog.tsx +7 -5
  119. package/src/components/dialogs/InterProScanDialog.tsx +20 -10
  120. package/src/components/dialogs/MetadataDialog.tsx +8 -1
  121. package/src/components/dialogs/SettingsDialog.tsx +76 -32
  122. package/src/components/dialogs/TracklistDialog.tsx +17 -3
  123. package/src/components/dialogs/UserProvidedDomainsDialog.tsx +11 -5
  124. package/src/components/header/Header.tsx +3 -1
  125. package/src/components/header/HeaderInfoArea.tsx +3 -2
  126. package/src/components/header/HeaderMenu.tsx +12 -7
  127. package/src/components/header/HeaderMenuExtra.tsx +28 -16
  128. package/src/components/header/ZoomControls.tsx +22 -6
  129. package/src/components/import/ImportForm.tsx +14 -2
  130. package/src/components/import/ImportFormExamples.tsx +59 -48
  131. package/src/components/minimap/Minimap.tsx +21 -9
  132. package/src/components/msa/MSACanvasBlock.tsx +5 -3
  133. package/src/components/msa/MSAMouseoverCanvas.tsx +5 -1
  134. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +4 -4
  135. package/src/components/msa/renderMSABlock.ts +10 -10
  136. package/src/components/msa/renderMSAMouseover.ts +3 -3
  137. package/src/components/tree/TreeBranchMenu.tsx +5 -3
  138. package/src/components/tree/TreeCanvasBlock.tsx +11 -4
  139. package/src/components/tree/TreeNodeMenu.tsx +1 -1
  140. package/src/components/tree/dialogs/TreeNodeInfoDialog.tsx +11 -2
  141. package/src/components/util.ts +1 -4
  142. package/src/ggplotPalettes.ts +1 -1
  143. package/src/launchInterProScan.ts +5 -5
  144. package/src/model/DialogQueue.ts +0 -1
  145. package/src/model.ts +99 -56
  146. package/src/parseGFF.ts +13 -11
  147. package/src/parseNewick.ts +3 -3
  148. package/src/parsers/ClustalMSA.ts +2 -2
  149. package/src/parsers/FastaMSA.ts +4 -4
  150. package/src/parsers/StockholmMSA.ts +10 -10
  151. package/src/renderToSvg.tsx +1 -2
  152. package/src/rowCoordinateCalculations.test.ts +19 -0
  153. package/src/rowCoordinateCalculations.ts +26 -0
  154. package/src/version.ts +1 -1

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