react-msaview 3.1.9 → 3.1.10

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package/bundle/index.js CHANGED
@@ -286,7 +286,7 @@ var WD=function(e,t){return WD=Object.setPrototypeOf||{__proto__:[]}instanceof A
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  * This source code is licensed under the MIT license found in the
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  * LICENSE file in the root directory of this source tree.
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  */
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aCe=qo((function({onClose:e,model:r}){const[n,o]=t.useState([{name:"NCBIfam",description:"NCBI RefSeq FAMs including TIGRFAMs",category:"Families, domains, sites & repeats",checked:!0},{name:"SFLD",description:"Structure function linkage database",category:"Families, domains, sites & repeats",checked:!0},{name:"Phobius",checked:!0,description:"A combined transmembrane topology and signal peptide predictor",category:"Other sequence features"},{name:"SignalP",checked:!0,category:"Other sequence features"},{name:"SignalP_EUK",category:"Other category",checked:!0},{name:"SignalP_GRAM_POSITIVE",category:"Other category",checked:!0},{name:"SignalP_GRAM_NEGATIVE",checked:!0,category:"Other category"},{name:"SUPERFAMILY",category:"Structural domains",checked:!0},{name:"PANTHER",category:"Families, domains, sites & repeats",checked:!0},{name:"Gene3D",category:"Structural domains",checked:!0},{name:"Hamap",category:"Families, domains, sites & 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mae({model:e,offsetY:a,ctx:p,theme:r,blockSizeYOverride:o,highResScaleFactorOverride:1}),Jie({model:e,theme:r,offsetY:a,offsetX:i,contrastScheme:d,ctx:f,blockSizeXOverride:h,blockSizeYOverride:o,highResScaleFactorOverride:1}),t.createElement(t.Fragment,null,t.createElement("defs",null,t.createElement("clipPath",{id:s},t.createElement("rect",{x:0,y:0,width:c,height:o}))),t.createElement("defs",null,t.createElement("clipPath",{id:"msa"},t.createElement("rect",{x:0,y:0,width:h,height:o}))),t.createElement("g",{clipPath:`url(#${s})`,dangerouslySetInnerHTML:{__html:p.getSvg().innerHTML}}),t.createElement("g",{clipPath:"url(#msa)",transform:`translate(${c} 0)`,dangerouslySetInnerHTML:{__html:f.getSvg().innerHTML}}))}function gCe({model:e,children:r}){const{minimapHeight:n,treeAreaWidth:o}=e;return t.createElement(t.Fragment,null,t.createElement("g",{transform:`translate(${o} 0)`},t.createElement(fCe,{model:e})),t.createElement("g",{transform:`translate(0 ${n})`},r))}function bCe({width:e,height:r,children:n}){return t.createElement("svg",{width:e,height:r,xmlns:"http://www.w3.org/2000/svg",xmlnsXlink:"http://www.w3.org/1999/xlink",viewBox:[0,0,e,r].toString()},n)}function vCe({children:e}){return e}var yCe=Object.freeze({__proto__:null,renderToSvg:async function(e,t){await $r((()=>!!e.initialized));const{width:r,height:n,scrollX:o,scrollY:i}=e,{exportType:a,theme:l,includeMinimap:s}=t;if("entire"===a)return hCe({width:e.totalWidth+e.treeAreaWidth,height:e.totalHeight,theme:l,model:e,offsetY:0,offsetX:0,includeMinimap:s});if("viewport"===a)return hCe({width:r,height:n,theme:l,model:e,offsetY:i,offsetX:-o,includeMinimap:s});throw new Error("unknown export type")}}),wCe={};function xCe(e){return e?"string"==typeof e?e:e+"":e}Object.defineProperty(wCe,"__esModule",{value:!0});const SCe=new class{async svg2canvas(e,t,r){const n=await new Promise((t=>{var r=new Image;r.onload=function(){t(r)},r.src=e}));var o=document.createElement("canvas");o.width=t,o.height=r;return o.getContext("2d").drawImage(n,0,0),o}toDataURL(e,t,r,n,o,i){var a=(new XMLSerializer).serializeToString(e);if(document.documentMode){/xmlns="http:\/\/www\.w3\.org\/2000\/svg".+xmlns="http:\/\/www\.w3\.org\/2000\/svg/gi.test(a)&&(a=a.replace('xmlns="http://www.w3.org/2000/svg','xmlns:xlink="http://www.w3.org/1999/xlink'))}i||(i={});var l="data:image/svg+xml;charset=utf-8,"+encodeURIComponent(a);if("image/svg+xml"===n||!n)return i.async?Promise.resolve(l):l;if("image/jpeg"===n||"image/png"===n){if(!i.async)throw new Error("svgcanvas: options.async must be set to true if type is image/jpeg | image/png");return(async()=>{const e=await this.svg2canvas(l,t,r),i=e.toDataURL(n,o);return e.remove(),i})()}throw new Error("svgcanvas: Unknown type for toDataURL, please use image/jpeg | image/png | image/svg+xml.")}getImageData(e,t,r,n,o,i,a,l){if(l||(l={}),!l.async)throw new Error("svgcanvas: options.async must be set to true for getImageData");const s=this.toDataURL(e,t,r,"image/svg+xml");return(async()=>{const e=await this.svg2canvas(s,t,r),l=e.getContext("2d").getImageData(n,o,i,a);return e.remove(),l})()}};
290
290
  /*!!
291
291
  * SVGCanvas v2.0.3
292
292
  * Draw on SVG using Canvas's 2D Context API.
package/dist/model.d.ts CHANGED
@@ -8,7 +8,7 @@ import ClustalMSA from './parsers/ClustalMSA';
8
8
  import StockholmMSA from './parsers/StockholmMSA';
9
9
  import FastaMSA from './parsers/FastaMSA';
10
10
  import { InterProScanResults } from './launchInterProScan';
11
- interface Accession {
11
+ export interface Accession {
12
12
  accession: string;
13
13
  name: string;
14
14
  description: string;
@@ -77,17 +77,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
77
77
  locationType: "UriLocation";
78
78
  uri: string;
79
79
  internetAccountId: string | undefined;
80
- /**
81
- * #volatile
82
- * a dummy variable that is incremented when ref changes so autorun for
83
- * drawing canvas commands will run
84
- */
85
80
  internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
86
81
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
87
82
  authInfo: import("mobx-state-tree").IType<any, any, any>;
88
- }> | undefined; /**
89
- * #volatile
90
- */
83
+ }> | undefined;
91
84
  } | import("mobx-state-tree").ModelSnapshotType<{
92
85
  locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
93
86
  name: import("mobx-state-tree").ISimpleType<string>;
@@ -101,9 +94,7 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
101
94
  blobId: import("mobx-state-tree").ISimpleType<string>;
102
95
  }, {}> | import("mobx-state-tree").ModelInstanceType<{
103
96
  locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
104
- localPath: import("mobx-state-tree").ISimpleType<string>; /**
105
- * #action
106
- */
97
+ localPath: import("mobx-state-tree").ISimpleType<string>;
107
98
  }, {}> | ({
108
99
  locationType: "UriLocation";
109
100
  uri: string;
@@ -114,7 +105,9 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
114
105
  internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
115
106
  internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
116
107
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
117
- authInfo: import("mobx-state-tree").IType<any, any, any>;
108
+ authInfo: import("mobx-state-tree").IType<any, any, any>; /**
109
+ * #action
110
+ */
118
111
  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
119
112
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject)>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
120
113
  msaFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
@@ -137,17 +130,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
137
130
  locationType: "UriLocation";
138
131
  uri: string;
139
132
  internetAccountId: string | undefined;
140
- /**
141
- * #volatile
142
- * a dummy variable that is incremented when ref changes so autorun for
143
- * drawing canvas commands will run
144
- */
145
133
  internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
146
134
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
147
135
  authInfo: import("mobx-state-tree").IType<any, any, any>;
148
- }> | undefined; /**
149
- * #volatile
150
- */
136
+ }> | undefined;
151
137
  } | import("mobx-state-tree").ModelSnapshotType<{
152
138
  locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
153
139
  name: import("mobx-state-tree").ISimpleType<string>;
@@ -161,9 +147,7 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
161
147
  blobId: import("mobx-state-tree").ISimpleType<string>;
162
148
  }, {}> | import("mobx-state-tree").ModelInstanceType<{
163
149
  locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
164
- localPath: import("mobx-state-tree").ISimpleType<string>; /**
165
- * #action
166
- */
150
+ localPath: import("mobx-state-tree").ISimpleType<string>;
167
151
  }, {}> | ({
168
152
  locationType: "UriLocation";
169
153
  uri: string;
@@ -174,7 +158,9 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
174
158
  internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
175
159
  internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
176
160
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
177
- authInfo: import("mobx-state-tree").IType<any, any, any>;
161
+ authInfo: import("mobx-state-tree").IType<any, any, any>; /**
162
+ * #action
163
+ */
178
164
  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
179
165
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject)>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
180
166
  treeMetadataFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
@@ -197,17 +183,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
197
183
  locationType: "UriLocation";
198
184
  uri: string;
199
185
  internetAccountId: string | undefined;
200
- /**
201
- * #volatile
202
- * a dummy variable that is incremented when ref changes so autorun for
203
- * drawing canvas commands will run
204
- */
205
186
  internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
206
187
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
207
188
  authInfo: import("mobx-state-tree").IType<any, any, any>;
208
- }> | undefined; /**
209
- * #volatile
210
- */
189
+ }> | undefined;
211
190
  } | import("mobx-state-tree").ModelSnapshotType<{
212
191
  locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
213
192
  name: import("mobx-state-tree").ISimpleType<string>;
@@ -221,9 +200,7 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
221
200
  blobId: import("mobx-state-tree").ISimpleType<string>;
222
201
  }, {}> | import("mobx-state-tree").ModelInstanceType<{
223
202
  locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
224
- localPath: import("mobx-state-tree").ISimpleType<string>; /**
225
- * #action
226
- */
203
+ localPath: import("mobx-state-tree").ISimpleType<string>;
227
204
  }, {}> | ({
228
205
  locationType: "UriLocation";
229
206
  uri: string;
@@ -234,7 +211,9 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
234
211
  internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
235
212
  internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
236
213
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
237
- authInfo: import("mobx-state-tree").IType<any, any, any>;
214
+ authInfo: import("mobx-state-tree").IType<any, any, any>; /**
215
+ * #action
216
+ */
238
217
  }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
239
218
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject)>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
240
219
  currentAlignment: import("mobx-state-tree").IType<number | undefined, number, number>;
@@ -791,17 +770,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
791
770
  locationType: "UriLocation";
792
771
  uri: string;
793
772
  internetAccountId: string | undefined;
794
- /**
795
- * #volatile
796
- * a dummy variable that is incremented when ref changes so autorun for
797
- * drawing canvas commands will run
798
- */
799
773
  internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
800
774
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
801
775
  authInfo: import("mobx-state-tree").IType<any, any, any>;
802
- }> | undefined; /**
803
- * #volatile
804
- */
776
+ }> | undefined;
805
777
  } | import("mobx-state-tree").ModelSnapshotType<{
806
778
  locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
807
779
  name: import("mobx-state-tree").ISimpleType<string>;
@@ -814,17 +786,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
814
786
  locationType: "UriLocation";
815
787
  uri: string;
816
788
  internetAccountId: string | undefined;
817
- /**
818
- * #volatile
819
- * a dummy variable that is incremented when ref changes so autorun for
820
- * drawing canvas commands will run
821
- */
822
789
  internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
823
790
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
824
791
  authInfo: import("mobx-state-tree").IType<any, any, any>;
825
- }> | undefined; /**
826
- * #volatile
827
- */
792
+ }> | undefined;
828
793
  } | import("mobx-state-tree").ModelSnapshotType<{
829
794
  locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
830
795
  name: import("mobx-state-tree").ISimpleType<string>;
@@ -837,17 +802,10 @@ declare function stateModelFactory(): import("mobx-state-tree").IModelType<{
837
802
  locationType: "UriLocation";
838
803
  uri: string;
839
804
  internetAccountId: string | undefined;
840
- /**
841
- * #volatile
842
- * a dummy variable that is incremented when ref changes so autorun for
843
- * drawing canvas commands will run
844
- */
845
805
  internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
846
806
  internetAccountType: import("mobx-state-tree").ISimpleType<string>;
847
807
  authInfo: import("mobx-state-tree").IType<any, any, any>;
848
- }> | undefined; /**
849
- * #volatile
850
- */
808
+ }> | undefined;
851
809
  } | import("mobx-state-tree").ModelSnapshotType<{
852
810
  locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
853
811
  name: import("mobx-state-tree").ISimpleType<string>;
package/dist/version.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const version = "3.1.9";
1
+ export declare const version = "3.1.10";
package/dist/version.js CHANGED
@@ -1,2 +1,2 @@
1
- export const version = '3.1.9';
1
+ export const version = '3.1.10';
2
2
  //# sourceMappingURL=version.js.map
@@ -1 +1 @@
1
- {"version":3,"file":"version.js","sourceRoot":"","sources":["../src/version.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,OAAO,GAAG,OAAO,CAAA"}
1
+ {"version":3,"file":"version.js","sourceRoot":"","sources":["../src/version.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,OAAO,GAAG,QAAQ,CAAA"}
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "react-msaview",
3
3
  "author": "Colin",
4
- "version": "3.1.9",
4
+ "version": "3.1.10",
5
5
  "license": "MIT",
6
6
  "main": "dist/index.js",
7
7
  "module": "dist/index.js",
package/src/model.ts CHANGED
@@ -58,7 +58,7 @@ import {
58
58
  loadInterProScanResults,
59
59
  } from './launchInterProScan'
60
60
 
61
- interface Accession {
61
+ export interface Accession {
62
62
  accession: string
63
63
  name: string
64
64
  description: string
package/src/version.ts CHANGED
@@ -1 +1 @@
1
- export const version = '3.1.9'
1
+ export const version = '3.1.10'