react-msaview 3.1.7 → 3.1.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (270) hide show
  1. package/bundle/index.js +32 -32
  2. package/dist/components/Checkbox2.d.ts +7 -0
  3. package/dist/components/Checkbox2.js +10 -0
  4. package/dist/components/Checkbox2.js.map +1 -0
  5. package/dist/components/Loading.js +12 -4
  6. package/dist/components/Loading.js.map +1 -1
  7. package/dist/components/MSAView.js +5 -8
  8. package/dist/components/MSAView.js.map +1 -1
  9. package/dist/components/SequenceTextArea.d.ts +4 -0
  10. package/dist/components/SequenceTextArea.js +38 -0
  11. package/dist/components/SequenceTextArea.js.map +1 -0
  12. package/dist/components/Track.js +9 -8
  13. package/dist/components/Track.js.map +1 -1
  14. package/dist/components/dialogs/AddTrackDialog.js +0 -1
  15. package/dist/components/dialogs/AddTrackDialog.js.map +1 -1
  16. package/dist/components/{ExportSVGDialog.d.ts → dialogs/ExportSVGDialog.d.ts} +1 -1
  17. package/dist/components/{ExportSVGDialog.js → dialogs/ExportSVGDialog.js} +3 -4
  18. package/dist/components/dialogs/ExportSVGDialog.js.map +1 -0
  19. package/dist/components/dialogs/FeatureDialog.d.ts +7 -0
  20. package/dist/components/dialogs/FeatureDialog.js +52 -0
  21. package/dist/components/dialogs/FeatureDialog.js.map +1 -0
  22. package/dist/components/dialogs/InterProScanDialog.d.ts +7 -0
  23. package/dist/components/dialogs/InterProScanDialog.js +163 -0
  24. package/dist/components/dialogs/InterProScanDialog.js.map +1 -0
  25. package/dist/components/dialogs/MetadataDialog.js +6 -3
  26. package/dist/components/dialogs/MetadataDialog.js.map +1 -1
  27. package/dist/components/dialogs/SettingsDialog.js +6 -11
  28. package/dist/components/dialogs/SettingsDialog.js.map +1 -1
  29. package/dist/components/{Header.d.ts → header/Header.d.ts} +1 -1
  30. package/dist/components/header/Header.js +30 -0
  31. package/dist/components/header/Header.js.map +1 -0
  32. package/dist/components/{HeaderInfoArea.d.ts → header/HeaderInfoArea.d.ts} +2 -2
  33. package/dist/components/header/HeaderInfoArea.js +20 -0
  34. package/dist/components/header/HeaderInfoArea.js.map +1 -0
  35. package/dist/components/header/HeaderMenu.d.ts +6 -0
  36. package/dist/components/header/HeaderMenu.js +40 -0
  37. package/dist/components/header/HeaderMenu.js.map +1 -0
  38. package/dist/components/header/HeaderMenuExtra.d.ts +6 -0
  39. package/dist/components/header/HeaderMenuExtra.js +92 -0
  40. package/dist/components/header/HeaderMenuExtra.js.map +1 -0
  41. package/dist/components/header/HeaderStatusArea.d.ts +6 -0
  42. package/dist/components/header/HeaderStatusArea.js +20 -0
  43. package/dist/components/header/HeaderStatusArea.js.map +1 -0
  44. package/dist/components/{MultiAlignmentSelector.d.ts → header/MultiAlignmentSelector.d.ts} +1 -1
  45. package/dist/components/header/MultiAlignmentSelector.js.map +1 -0
  46. package/dist/components/{ZoomControls.d.ts → header/ZoomControls.d.ts} +1 -1
  47. package/dist/components/header/ZoomControls.js +15 -0
  48. package/dist/components/header/ZoomControls.js.map +1 -0
  49. package/dist/components/{ImportForm/index.js → import/ImportForm.js} +1 -1
  50. package/dist/components/import/ImportForm.js.map +1 -0
  51. package/dist/components/{ImportForm → import}/ImportFormExamples.js +6 -2
  52. package/dist/components/import/ImportFormExamples.js.map +1 -0
  53. package/dist/components/import/data/seq2.js.map +1 -0
  54. package/dist/components/import/util.js +10 -0
  55. package/dist/components/import/util.js.map +1 -0
  56. package/dist/components/{Minimap.d.ts → minimap/Minimap.d.ts} +1 -1
  57. package/dist/components/minimap/Minimap.js.map +1 -0
  58. package/dist/components/{MinimapSVG.d.ts → minimap/MinimapSVG.d.ts} +1 -1
  59. package/dist/components/minimap/MinimapSVG.js.map +1 -0
  60. package/dist/components/msa/Loading.js.map +1 -0
  61. package/dist/components/{MSAPanel → msa}/MSACanvas.js +3 -2
  62. package/dist/components/msa/MSACanvas.js.map +1 -0
  63. package/dist/components/{MSAPanel/MSABlock.js → msa/MSACanvasBlock.js} +21 -9
  64. package/dist/components/msa/MSACanvasBlock.js.map +1 -0
  65. package/dist/components/msa/MSAMouseoverCanvas.js.map +1 -0
  66. package/dist/components/msa/MSAPanel.d.ts +6 -0
  67. package/dist/components/{MSAPanel/index.js → msa/MSAPanel.js} +6 -3
  68. package/dist/components/msa/MSAPanel.js.map +1 -0
  69. package/dist/components/msa/renderBoxFeatureCanvasBlock.d.ts +9 -0
  70. package/dist/components/msa/renderBoxFeatureCanvasBlock.js +44 -0
  71. package/dist/components/msa/renderBoxFeatureCanvasBlock.js.map +1 -0
  72. package/dist/components/{MSAPanel → msa}/renderMSABlock.js +24 -20
  73. package/dist/components/msa/renderMSABlock.js.map +1 -0
  74. package/dist/components/msa/renderMSAMouseover.js.map +1 -0
  75. package/dist/components/tree/TreeBranchMenu.js.map +1 -0
  76. package/dist/components/{TreePanel → tree}/TreeCanvas.js +1 -1
  77. package/dist/components/tree/TreeCanvas.js.map +1 -0
  78. package/dist/components/{TreePanel → tree}/TreeCanvasBlock.js +1 -1
  79. package/dist/components/tree/TreeCanvasBlock.js.map +1 -0
  80. package/dist/components/{TreePanel → tree}/TreeNodeMenu.js +2 -33
  81. package/dist/components/tree/TreeNodeMenu.js.map +1 -0
  82. package/dist/components/{TreePanel/index.js → tree/TreePanel.js} +2 -2
  83. package/dist/components/tree/TreePanel.js.map +1 -0
  84. package/dist/components/tree/TreeRuler.js.map +1 -0
  85. package/dist/components/{TreePanel → tree}/dialogs/TreeNodeInfoDialog.js +6 -2
  86. package/dist/components/tree/dialogs/TreeNodeInfoDialog.js.map +1 -0
  87. package/dist/components/{TreePanel → tree}/renderTreeCanvas.js +23 -37
  88. package/dist/components/tree/renderTreeCanvas.js.map +1 -0
  89. package/dist/fetchUtils.d.ts +5 -0
  90. package/dist/fetchUtils.js +23 -0
  91. package/dist/fetchUtils.js.map +1 -0
  92. package/dist/ggplotPalettes.d.ts +3 -0
  93. package/dist/ggplotPalettes.js +24 -0
  94. package/dist/ggplotPalettes.js.map +1 -0
  95. package/dist/index.d.ts +1 -1
  96. package/dist/index.js +1 -1
  97. package/dist/index.js.map +1 -1
  98. package/dist/launchInterProScan.d.ts +32 -0
  99. package/dist/launchInterProScan.js +47 -0
  100. package/dist/launchInterProScan.js.map +1 -0
  101. package/dist/model/DataModel.js.map +1 -0
  102. package/dist/model/DialogQueue.js.map +1 -0
  103. package/dist/model/msaModel.d.ts +14 -0
  104. package/dist/model/msaModel.js +36 -0
  105. package/dist/model/msaModel.js.map +1 -0
  106. package/dist/model/treeModel.d.ts +46 -0
  107. package/dist/model/treeModel.js +105 -0
  108. package/dist/model/treeModel.js.map +1 -0
  109. package/dist/model.d.ts +261 -273
  110. package/dist/model.js +1043 -1029
  111. package/dist/model.js.map +1 -1
  112. package/dist/parseGFF.d.ts +10 -0
  113. package/dist/parseGFF.js +29 -0
  114. package/dist/parseGFF.js.map +1 -0
  115. package/dist/renderToSvg.js +23 -9
  116. package/dist/renderToSvg.js.map +1 -1
  117. package/dist/reparseTree.d.ts +2 -0
  118. package/dist/reparseTree.js +13 -0
  119. package/dist/reparseTree.js.map +1 -0
  120. package/dist/util.d.ts +4 -10
  121. package/dist/util.js +3 -28
  122. package/dist/util.js.map +1 -1
  123. package/dist/version.d.ts +1 -1
  124. package/dist/version.js +1 -1
  125. package/package.json +12 -2
  126. package/src/components/Checkbox2.tsx +34 -0
  127. package/src/components/Loading.tsx +27 -11
  128. package/src/components/MSAView.tsx +6 -10
  129. package/src/components/SequenceTextArea.tsx +63 -0
  130. package/src/components/Track.tsx +8 -13
  131. package/src/components/dialogs/AddTrackDialog.tsx +0 -1
  132. package/src/components/{ExportSVGDialog.tsx → dialogs/ExportSVGDialog.tsx} +9 -16
  133. package/src/components/dialogs/FeatureDialog.tsx +109 -0
  134. package/src/components/dialogs/InterProScanDialog.tsx +230 -0
  135. package/src/components/dialogs/MetadataDialog.tsx +9 -2
  136. package/src/components/dialogs/SettingsDialog.tsx +10 -30
  137. package/src/components/header/Header.tsx +44 -0
  138. package/src/components/header/HeaderInfoArea.tsx +27 -0
  139. package/src/components/header/HeaderMenu.tsx +54 -0
  140. package/src/components/header/HeaderMenuExtra.tsx +108 -0
  141. package/src/components/header/HeaderStatusArea.tsx +31 -0
  142. package/src/components/{MultiAlignmentSelector.tsx → header/MultiAlignmentSelector.tsx} +1 -1
  143. package/src/components/header/ZoomControls.tsx +28 -0
  144. package/src/components/{ImportForm → import}/ImportFormExamples.tsx +12 -1
  145. package/src/components/{ImportForm → import}/util.ts +5 -10
  146. package/src/components/{Minimap.tsx → minimap/Minimap.tsx} +1 -1
  147. package/src/components/{MinimapSVG.tsx → minimap/MinimapSVG.tsx} +1 -1
  148. package/src/components/{MSAPanel → msa}/MSACanvas.tsx +3 -2
  149. package/src/components/{MSAPanel/MSABlock.tsx → msa/MSACanvasBlock.tsx} +25 -12
  150. package/src/components/{MSAPanel/index.tsx → msa/MSAPanel.tsx} +8 -2
  151. package/src/components/msa/renderBoxFeatureCanvasBlock.ts +88 -0
  152. package/src/components/{MSAPanel → msa}/renderMSABlock.ts +26 -20
  153. package/src/components/{TreePanel → tree}/TreeCanvas.tsx +1 -1
  154. package/src/components/{TreePanel → tree}/TreeCanvasBlock.tsx +1 -1
  155. package/src/components/{TreePanel → tree}/TreeNodeMenu.tsx +1 -53
  156. package/src/components/{TreePanel/index.tsx → tree/TreePanel.tsx} +1 -1
  157. package/src/components/{TreePanel → tree}/dialogs/TreeNodeInfoDialog.tsx +9 -2
  158. package/src/components/{TreePanel → tree}/renderTreeCanvas.ts +25 -41
  159. package/src/fetchUtils.ts +30 -0
  160. package/src/ggplotPalettes.ts +25 -0
  161. package/src/index.ts +1 -1
  162. package/src/launchInterProScan.ts +98 -0
  163. package/src/model/msaModel.ts +39 -0
  164. package/src/model/treeModel.ts +116 -0
  165. package/src/model.ts +1124 -1126
  166. package/src/parseGFF.ts +32 -0
  167. package/src/renderToSvg.tsx +27 -8
  168. package/src/reparseTree.ts +16 -0
  169. package/src/util.ts +4 -33
  170. package/src/version.ts +1 -1
  171. package/dist/DataModel.js.map +0 -1
  172. package/dist/DialogQueue.js.map +0 -1
  173. package/dist/SelectedStructuresMixin.d.ts +0 -46
  174. package/dist/SelectedStructuresMixin.js +0 -52
  175. package/dist/SelectedStructuresMixin.js.map +0 -1
  176. package/dist/StructureModel.d.ts +0 -9
  177. package/dist/StructureModel.js +0 -11
  178. package/dist/StructureModel.js.map +0 -1
  179. package/dist/UniprotTrack.d.ts +0 -27
  180. package/dist/UniprotTrack.js +0 -53
  181. package/dist/UniprotTrack.js.map +0 -1
  182. package/dist/components/BoxTrack.d.ts +0 -7
  183. package/dist/components/BoxTrack.js +0 -15
  184. package/dist/components/BoxTrack.js.map +0 -1
  185. package/dist/components/BoxTrackBlock.d.ts +0 -8
  186. package/dist/components/BoxTrackBlock.js +0 -136
  187. package/dist/components/BoxTrackBlock.js.map +0 -1
  188. package/dist/components/ExportSVGDialog.js.map +0 -1
  189. package/dist/components/Header.js +0 -62
  190. package/dist/components/Header.js.map +0 -1
  191. package/dist/components/HeaderInfoArea.js +0 -12
  192. package/dist/components/HeaderInfoArea.js.map +0 -1
  193. package/dist/components/ImportForm/ImportFormExamples.js.map +0 -1
  194. package/dist/components/ImportForm/data/seq2.js.map +0 -1
  195. package/dist/components/ImportForm/index.js.map +0 -1
  196. package/dist/components/ImportForm/util.js +0 -16
  197. package/dist/components/ImportForm/util.js.map +0 -1
  198. package/dist/components/MSAPanel/Loading.js.map +0 -1
  199. package/dist/components/MSAPanel/MSABlock.js.map +0 -1
  200. package/dist/components/MSAPanel/MSACanvas.js.map +0 -1
  201. package/dist/components/MSAPanel/MSAMouseoverCanvas.js.map +0 -1
  202. package/dist/components/MSAPanel/index.d.ts +0 -5
  203. package/dist/components/MSAPanel/index.js.map +0 -1
  204. package/dist/components/MSAPanel/renderMSABlock.js.map +0 -1
  205. package/dist/components/MSAPanel/renderMSAMouseover.js.map +0 -1
  206. package/dist/components/Minimap.js.map +0 -1
  207. package/dist/components/MinimapSVG.js.map +0 -1
  208. package/dist/components/MultiAlignmentSelector.js.map +0 -1
  209. package/dist/components/TreePanel/TreeBranchMenu.js.map +0 -1
  210. package/dist/components/TreePanel/TreeCanvas.js.map +0 -1
  211. package/dist/components/TreePanel/TreeCanvasBlock.js.map +0 -1
  212. package/dist/components/TreePanel/TreeNodeMenu.js.map +0 -1
  213. package/dist/components/TreePanel/TreeRuler.js.map +0 -1
  214. package/dist/components/TreePanel/dialogs/TreeNodeInfoDialog.js.map +0 -1
  215. package/dist/components/TreePanel/index.js.map +0 -1
  216. package/dist/components/TreePanel/renderTreeCanvas.js.map +0 -1
  217. package/dist/components/VerticalGuide.d.ts +0 -7
  218. package/dist/components/VerticalGuide.js +0 -30
  219. package/dist/components/VerticalGuide.js.map +0 -1
  220. package/dist/components/ZoomControls.js +0 -59
  221. package/dist/components/ZoomControls.js.map +0 -1
  222. package/src/SelectedStructuresMixin.ts +0 -59
  223. package/src/StructureModel.ts +0 -11
  224. package/src/UniprotTrack.ts +0 -59
  225. package/src/components/BoxTrack.tsx +0 -33
  226. package/src/components/BoxTrackBlock.tsx +0 -200
  227. package/src/components/Header.tsx +0 -99
  228. package/src/components/HeaderInfoArea.tsx +0 -21
  229. package/src/components/VerticalGuide.tsx +0 -50
  230. package/src/components/ZoomControls.tsx +0 -86
  231. package/dist/components/{MultiAlignmentSelector.js → header/MultiAlignmentSelector.js} +0 -0
  232. package/dist/components/{ImportForm/index.d.ts → import/ImportForm.d.ts} +0 -0
  233. package/dist/components/{ImportForm → import}/ImportFormExamples.d.ts +0 -0
  234. package/dist/components/{ImportForm → import}/data/seq2.d.ts +0 -0
  235. package/dist/components/{ImportForm → import}/data/seq2.js +0 -0
  236. package/dist/components/{ImportForm → import}/util.d.ts +0 -0
  237. package/dist/components/{Minimap.js → minimap/Minimap.js} +0 -0
  238. package/dist/components/{MinimapSVG.js → minimap/MinimapSVG.js} +0 -0
  239. package/dist/components/{MSAPanel → msa}/Loading.d.ts +0 -0
  240. package/dist/components/{MSAPanel → msa}/Loading.js +0 -0
  241. package/dist/components/{MSAPanel → msa}/MSACanvas.d.ts +0 -0
  242. package/dist/components/{MSAPanel/MSABlock.d.ts → msa/MSACanvasBlock.d.ts} +0 -0
  243. package/dist/components/{MSAPanel → msa}/MSAMouseoverCanvas.d.ts +0 -0
  244. package/dist/components/{MSAPanel → msa}/MSAMouseoverCanvas.js +0 -0
  245. package/dist/components/{MSAPanel → msa}/renderMSABlock.d.ts +1 -1
  246. /package/dist/components/{MSAPanel → msa}/renderMSAMouseover.d.ts +0 -0
  247. /package/dist/components/{MSAPanel → msa}/renderMSAMouseover.js +0 -0
  248. /package/dist/components/{TreePanel → tree}/TreeBranchMenu.d.ts +0 -0
  249. /package/dist/components/{TreePanel → tree}/TreeBranchMenu.js +0 -0
  250. /package/dist/components/{TreePanel → tree}/TreeCanvas.d.ts +0 -0
  251. /package/dist/components/{TreePanel → tree}/TreeCanvasBlock.d.ts +0 -0
  252. /package/dist/components/{TreePanel → tree}/TreeNodeMenu.d.ts +0 -0
  253. /package/dist/components/{TreePanel/index.d.ts → tree/TreePanel.d.ts} +0 -0
  254. /package/dist/components/{TreePanel → tree}/TreeRuler.d.ts +0 -0
  255. /package/dist/components/{TreePanel → tree}/TreeRuler.js +0 -0
  256. /package/dist/components/{TreePanel → tree}/dialogs/TreeNodeInfoDialog.d.ts +0 -0
  257. /package/dist/components/{TreePanel → tree}/renderTreeCanvas.d.ts +0 -0
  258. /package/dist/{DataModel.d.ts → model/DataModel.d.ts} +0 -0
  259. /package/dist/{DataModel.js → model/DataModel.js} +0 -0
  260. /package/dist/{DialogQueue.d.ts → model/DialogQueue.d.ts} +0 -0
  261. /package/dist/{DialogQueue.js → model/DialogQueue.js} +0 -0
  262. /package/src/components/{ImportForm/index.tsx → import/ImportForm.tsx} +0 -0
  263. /package/src/components/{ImportForm → import}/data/seq2.ts +0 -0
  264. /package/src/components/{MSAPanel → msa}/Loading.tsx +0 -0
  265. /package/src/components/{MSAPanel → msa}/MSAMouseoverCanvas.tsx +0 -0
  266. /package/src/components/{MSAPanel → msa}/renderMSAMouseover.ts +0 -0
  267. /package/src/components/{TreePanel → tree}/TreeBranchMenu.tsx +0 -0
  268. /package/src/components/{TreePanel → tree}/TreeRuler.tsx +0 -0
  269. /package/src/{DataModel.ts → model/DataModel.ts} +0 -0
  270. /package/src/{DialogQueue.ts → model/DialogQueue.ts} +0 -0

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