react-msaview 3.1.2 → 3.1.4

package/dist/components/TreePanel/TreeCanvasBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TreeCanvasBlock.js","sourceRoot":"","sources":["../../../src/components/TreePanel/TreeCanvasBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvE,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,KAAK,MAAM,OAAO,CAAA;AAIzB,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,MAAM,oBAAoB,CAAA;AAmB9D,MAAM,eAAe,GAAG,QAAQ,CAAC,UAAU,EACzC,KAAK,EACL,OAAO,GAIR;IACC,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,GAAG,GAAG,MAAM,EAAqB,CAAA;IACvC,MAAM,QAAQ,GAAG,MAAM,CAAC,IAAI,KAAK,EAAc,CAAC,CAAA;IAChD,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IACpD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,EAAe,CAAA;IAC3D,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,QAAQ,EAAe,CAAA;IACnE,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAc,CAAA;IAEtD,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,kBAAkB,EAAE,GAAG,KAAK,CAAA;IAEvE,MAAM,KAAK,GAAG,aAAa,GAAG,OAAO,CAAA;IACrC,MAAM,MAAM,GAAG,SAAS,CAAA;IACxB,MAAM,EAAE,GAAG,KAAK,GAAG,kBAAkB,CAAA;IACrC,MAAM,EAAE,GAAG,MAAM,GAAG,kBAAkB,CAAA;IAEtC,MAAM,IAAI,GAAG,WAAW,CACtB,CAAC,GAAsB,EAAE,EAAE;QACzB,KAAK,CAAC,YAAY,EAAE,CAAA;QACpB,GAAG,CAAC,OAAO,GAAG,GAAG,CAAA;IACnB,CAAC;IACD,uDAAuD;IACvD,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,CAAC,CACvB,CAAA;IACD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,OAAO,OAAO,CAAC,GAAG,EAAE;YAClB,gBAAgB,CAAC;gBACf,GAAG;gBACH,KAAK;gBACL,OAAO;gBACP,QAAQ,EAAE,QAAQ,CAAC,OAAO;gBAC1B,KAAK;aACN,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC,CAAA;IAE3B,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,GAAG,GAAG,YAAY,CAAC,OAAO,EAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QAClD,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,aAAa,GAAG,OAAO,EAAE,SAAS,CAAC,CAAA;QACvD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,CAAA;QAE1B,IAAI,QAAQ,EAAE,CAAC;YACb,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,QAAQ,CAAA;YAE3C,GAAG,CAAC,SAAS,GAAG,iBAAiB,CAAA;YACjC,GAAG,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,GAAG,IAAI,EAAE,IAAI,GAAG,IAAI,CAAC,CAAA;QACpD,CAAC;IACH,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,EAAE,SAAS,EAAE,aAAa,CAAC,CAAC,CAAA;IAEjD,SAAS,mBAAmB,CAAC,KAAuB;QAClD,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QAEnC,MAAM,CAAC,KAAK,CAAC,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC;YACtC,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;YACX,IAAI,EAAE,CAAC,GAAG,OAAO;YACjB,IAAI,EAAE,CAAC,GAAG,CAAC,GAAG,OAAO;SACtB,CAAC,CAAA;QAEF,OAAO,KAAK,IAAI,KAAK,CAAC,MAAM;YAC1B,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE;YAClD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IAED,SAAS,iBAAiB,CAAC,KAAuB;QAChD,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAA;QACnC,MAAM,CAAC,KAAK,CAAC,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC;YACtC,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,CAAC,GAAG,CAAC;YACX,IAAI,EAAE,CAAC,GAAG,OAAO;YACjB,IAAI,EAAE,CAAC,GAAG,CAAC,GAAG,OAAO;SACtB,CAAC,CAAA;QAEF,OAAO,KAAK,IAAI,CAAC,KAAK,CAAC,MAAM;YAC3B,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC,EAAE,KAAK,CAAC,OAAO,EAAE;YAClD,CAAC,CAAC,SAAS,CAAA;IACf,CAAC;IACD,MAAM,KAAK,GAAG;QACZ,KAAK;QACL,MAAM;QACN,GAAG,EAAE,OAAO,GAAG,OAAO;QACtB,IAAI,EAAE,CAAC;QACP,QAAQ,EAAE,UAAU;KACZ,CAAA;IACV,OAAO,CACL;QACG,UAAU,EAAE,EAAE,CAAC,CAAC,CAAC,CAChB,oBAAC,cAAc,IACb,IAAI,EAAE,UAAU,EAChB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,SAAS,CAAC,GACvC,CACH,CAAC,CAAC,CAAC,IAAI;QAEP,cAAc,EAAE,EAAE,CAAC,CAAC,CAAC,CACpB,oBAAC,YAAY,IACX,IAAI,EAAE,cAAc,EACpB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,GAAG,EAAE,CAAC,iBAAiB,CAAC,SAAS,CAAC,GAC3C,CACH,CAAC,CAAC,CAAC,IAAI;QAER,gCACE,KAAK,EAAE,EAAE,EACT,MAAM,EAAE,EAAE,EACV,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;oBACjB,OAAM;gBACR,CAAC;gBAED,MAAM,GAAG,GAAG,iBAAiB,CAAC,KAAK,CAAC,IAAI,mBAAmB,CAAC,KAAK,CAAC,CAAA;gBAClE,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,SAAS,CAAA;gBACtD,WAAW,CAAC,iBAAiB,CAAC,KAAK,CAAC,CAAC,CAAA;YACvC,CAAC,EACD,OAAO,EAAE,KAAK,CAAC,EAAE;gBACf,MAAM,EAAE,OAAO,EAAE,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,GAAG,KAAK,CAAA;gBAExC,MAAM,IAAI,GAAG,mBAAmB,CAAC,KAAK,CAAC,CAAA;gBACvC,IAAI,IAAI,EAAE,EAAE,EAAE,CAAC;oBACb,aAAa,CAAC,EAAE,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAA;gBAClC,CAAC;gBAED,MAAM,KAAK,GAAG,iBAAiB,CAAC,KAAK,CAAC,CAAA;gBACtC,IAAI,KAAK,EAAE,EAAE,EAAE,CAAC;oBACd,iBAAiB,CAAC,EAAE,GAAG,KAAK,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAA;gBACvC,CAAC;YACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,SAAS,CAAC,EAC1C,GAAG,EAAE,IAAI,GACT;QACF,gCACE,KAAK,EAAE;gBACL,GAAG,KAAK;gBACR,aAAa,EAAE,MAAM;gBACrB,MAAM,EAAE,GAAG;aACZ,EACD,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,MAAM,EACd,GAAG,EAAE,YAAY,GACjB,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,eAAe,CAAA"}

package/dist/components/TreePanel/TreeNodeMenu.js

@@ -3,7 +3,6 @@ import { Menu, MenuItem } from '@mui/material';
 import { observer } from 'mobx-react';
 const TreeNodeInfoDialog = lazy(() => import('./dialogs/TreeNodeInfoDialog'));
 const TreeMenu = observer(function ({ node, onClose, model, }) {
-    var _a, _b;
     const { structures } = model;
     const nodeDetails = node ? model.getRowData(node.name) : undefined;
     return (React.createElement(React.Fragment, null,
@@ -27,8 +26,8 @@ const TreeMenu = observer(function ({ node, onClose, model, }) {
             React.createElement(MenuItem, { dense: true, onClick: () => {
                     model.hideNode(node.id);
                     onClose();
-                } }, "Hide node"), (_a = structures[node.name]) === null || _a === void 0 ? void 0 :
-            _a.map(entry => {
+                } }, "Hide node"),
+            structures[node.name]?.map(entry => {
                 return !model.selectedStructures.some(n => n.id === node.name) ? (React.createElement(MenuItem, { key: JSON.stringify(entry), dense: true, onClick: () => {
                         model.addStructureToSelection({
                             structure: entry,
@@ -49,11 +48,10 @@ const TreeMenu = observer(function ({ node, onClose, model, }) {
                     entry.pdb,
                     ")"));
             }), // @ts-expect-error
-        (_b = nodeDetails === null || nodeDetails === void 0 ? void 0 : nodeDetails.data.accession) === null || _b === void 0 ? void 0 :
-            _b.map(accession => (React.createElement(MenuItem, { dense: true, key: accession, onClick: () => {
+            nodeDetails?.data.accession?.map(accession => (React.createElement(MenuItem, { dense: true, key: accession, onClick: () => {
                     model.addUniprotTrack({
                         // @ts-expect-error
-                        name: nodeDetails === null || nodeDetails === void 0 ? void 0 : nodeDetails.data.name,
+                        name: nodeDetails?.data.name,
                         accession,
                     });
                     onClose();

package/dist/components/TreePanel/TreeNodeMenu.js.map

@@ -1 +1 @@
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package/dist/components/TreePanel/renderTreeCanvas.js

@@ -46,7 +46,7 @@ export function renderNodeBubbles({ ctx, clickMap, offsetY, model, blockSizeYOve
             ctx.arc(x, y, radius, 0, 2 * Math.PI);
             ctx.fill();
             ctx.stroke();
-            clickMap === null || clickMap === void 0 ? void 0 : clickMap.insert({
+            clickMap?.insert({
                 minX: x - radius,
                 maxX: x - radius + d,
                 minY: y - radius,
@@ -59,8 +59,7 @@ export function renderNodeBubbles({ ctx, clickMap, offsetY, model, blockSizeYOve
     }
 }
 export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSizeYOverride, }) {
-    var _a;
-    const { rowHeight, showBranchLen, treeMetadata, hierarchy, blockSize, labelsAlignRight, drawTree, structures, treeAreaWidth, margin, noTree, } = model;
+    const { rowHeight, showBranchLen, treeMetadata, hierarchy, blockSize, labelsAlignRight, drawTree, structures, treeAreaWidth, noTree, } = model;
     const by = blockSizeYOverride || blockSize;
     if (labelsAlignRight) {
         ctx.textAlign = 'right';
@@ -77,7 +76,7 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
         y: x, data: { name, id }, 
         // @ts-expect-error
         len, } = node;
-        const displayName = ((_a = treeMetadata[name]) === null || _a === void 0 ? void 0 : _a.genome) || name;
+        const displayName = treeMetadata[name]?.genome || name;
         if (y > offsetY - extendBounds && y < offsetY + by + extendBounds) {
             // note: +rowHeight/4 matches with -rowHeight/4 in msa
             const yp = y + rowHeight / 4;
@@ -88,7 +87,7 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
             ctx.fillStyle = hasStructure ? 'blue' : theme.palette.text.primary;
             if (!drawTree && !labelsAlignRight) {
                 ctx.fillText(displayName, 0, yp);
-                clickMap === null || clickMap === void 0 ? void 0 : clickMap.insert({
+                clickMap?.insert({
                     minX: 0,
                     maxX: width,
                     minY: yp - height,
@@ -99,7 +98,7 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
             }
             else if (labelsAlignRight) {
                 const smallPadding = 2;
-                const offset = treeAreaWidth - smallPadding - margin.left;
+                const offset = treeAreaWidth - smallPadding;
                 if (drawTree && !noTree) {
                     const { width } = ctx.measureText(displayName);
                     ctx.moveTo(xp + radius + 2, y);
@@ -107,9 +106,9 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
                     ctx.stroke();
                 }
                 ctx.fillText(displayName, offset, yp);
-                clickMap === null || clickMap === void 0 ? void 0 : clickMap.insert({
-                    minX: treeAreaWidth - margin.left - width,
-                    maxX: treeAreaWidth - margin.left,
+                clickMap?.insert({
+                    minX: treeAreaWidth - width,
+                    maxX: treeAreaWidth,
                     minY: yp - height,
                     maxY: yp,
                     name,
@@ -118,7 +117,7 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
             }
             else {
                 ctx.fillText(displayName, xp + d, yp);
-                clickMap === null || clickMap === void 0 ? void 0 : clickMap.insert({
+                clickMap?.insert({
                     minX: xp + d,
                     maxX: xp + d + width,
                     minY: yp - height,
@@ -132,8 +131,8 @@ export function renderTreeLabels({ theme, model, offsetY, ctx, clickMap, blockSi
     ctx.setLineDash([]);
 }
 export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highResScaleFactorOverride, blockSizeYOverride, }) {
-    clickMap === null || clickMap === void 0 ? void 0 : clickMap.clear();
-    const { noTree, drawTree, drawNodeBubbles, treeWidth, highResScaleFactor, margin, blockSize, fontSize, rowHeight, nref, } = model;
+    clickMap?.clear();
+    const { noTree, drawTree, drawNodeBubbles, treeWidth, highResScaleFactor, blockSize, fontSize, rowHeight, nref, } = model;
     const by = blockSizeYOverride || blockSize;
     ctx.resetTransform();
     // this is a bogus use of nref, it is never less than 0. we just are using it
@@ -144,7 +143,7 @@ export function renderTreeCanvas({ model, clickMap, ctx, offsetY, theme, highRes
     const k = nref < 0 ? -Infinity : highResScaleFactorOverride || highResScaleFactor;
     ctx.scale(k, k);
     ctx.clearRect(0, 0, treeWidth + padding, by);
-    ctx.translate(margin.left, -offsetY);
+    ctx.translate(0, -offsetY);
     const font = ctx.font;
     ctx.font = font.replace(/\d+px/, `${fontSize}px`);
     if (!noTree && drawTree) {

package/dist/components/TreePanel/renderTreeCanvas.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -1,2 +1,2 @@
-export { default as MSAView } from './components/MSAView';
+export { default as MSAView } from './components/Loading';
 export { default as MSAModel, type MsaViewModel } from './model';

package/dist/index.js

@@ -1,3 +1,3 @@
-export { default as MSAView } from './components/MSAView';
+export { default as MSAView } from './components/Loading';
 export { default as MSAModel } from './model';
 //# sourceMappingURL=index.js.map

package/dist/layout.js

@@ -1,5 +1,10 @@
 import RBush from 'rbush';
 export default class Layout {
+    rectangles;
+    maxHeightReached;
+    maxHeight;
+    rbush;
+    pTotalHeight;
     constructor({ maxHeight = 10000, } = {}) {
         this.maxHeightReached = false;
         this.rbush = new RBush();

package/dist/layout.js.map

@@ -1 +1 @@
-{"version":3,"file":"layout.js","sourceRoot":"","sources":["../src/layout.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,MAAM,CAAC,OAAO,OAAO,MAAM;IAqBzB,YAAY,EACV,SAAS,GAAG,KAAK,MAGf,EAAE;QACJ,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;QAC7B,IAAI,CAAC,KAAK,GAAG,IAAI,KAAK,EAAE,CAAA;QACxB,IAAI,CAAC,UAAU,GAAG,IAAI,GAAG,EAAE,CAAA;QAC3B,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;QACrC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA,CAAC,uDAAuD;IAC/E,CAAC;IAED;;;OAGG;IACH,OAAO,CACL,EAAU,EACV,IAAY,EACZ,KAAa,EACb,MAAc,EACd,IAAa;QAEb,eAAe;QACf,MAAM,cAAc,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;QAC9C,IAAI,cAAc,EAAE,CAAC;YACnB,OAAO,cAAc,CAAC,IAAI,CAAA;QAC5B,CAAC;QAED,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,OACE,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC;YAClB,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAU;YAChB,IAAI,EAAE,KAAK;YACX,IAAI,EAAE,UAAU,GAAG,MAAM;SAC1B,CAAC;YACF,UAAU,IAAI,IAAI,CAAC,SAAS,EAC5B,CAAC;YACD,UAAU,IAAI,CAAC,CAAA;QACjB,CAAC;QAED,MAAM,MAAM,GAAG;YACb,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAU;YAChB,IAAI,EAAE,KAAK;YACX,IAAI,EAAE,UAAU,GAAG,MAAM;YACzB,EAAE;YACF,IAAI;SACL,CAAA;QACD,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;QACzB,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,EAAE,MAAM,CAAC,CAAA;QAC/B,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,YAAY,EAAE,UAAU,CAAC,CAAA;QAC3D,OAAO,UAAU,CAAA;IACnB,CAAC;IAED,IAAI,WAAW;QACb,OAAO,IAAI,CAAC,YAAY,CAAA;IAC1B,CAAC;CACF"}
+{"version":3,"file":"layout.js","sourceRoot":"","sources":["../src/layout.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,MAAM,CAAC,OAAO,OAAO,MAAM;IAClB,UAAU,CAUhB;IAEM,gBAAgB,CAAS;IAExB,SAAS,CAAQ;IAEjB,KAAK,CAAuB;IAE5B,YAAY,CAAQ;IAE5B,YAAY,EACV,SAAS,GAAG,KAAK,MAGf,EAAE;QACJ,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;QAC7B,IAAI,CAAC,KAAK,GAAG,IAAI,KAAK,EAAE,CAAA;QACxB,IAAI,CAAC,UAAU,GAAG,IAAI,GAAG,EAAE,CAAA;QAC3B,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAA;QACrC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA,CAAC,uDAAuD;IAC/E,CAAC;IAED;;;OAGG;IACH,OAAO,CACL,EAAU,EACV,IAAY,EACZ,KAAa,EACb,MAAc,EACd,IAAa;QAEb,eAAe;QACf,MAAM,cAAc,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;QAC9C,IAAI,cAAc,EAAE,CAAC;YACnB,OAAO,cAAc,CAAC,IAAI,CAAA;QAC5B,CAAC;QAED,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,OACE,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC;YAClB,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAU;YAChB,IAAI,EAAE,KAAK;YACX,IAAI,EAAE,UAAU,GAAG,MAAM;SAC1B,CAAC;YACF,UAAU,IAAI,IAAI,CAAC,SAAS,EAC5B,CAAC;YACD,UAAU,IAAI,CAAC,CAAA;QACjB,CAAC;QAED,MAAM,MAAM,GAAG;YACb,IAAI,EAAE,IAAI;YACV,IAAI,EAAE,UAAU;YAChB,IAAI,EAAE,KAAK;YACX,IAAI,EAAE,UAAU,GAAG,MAAM;YACzB,EAAE;YACF,IAAI;SACL,CAAA;QACD,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;QACzB,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,EAAE,MAAM,CAAC,CAAA;QAC/B,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,YAAY,EAAE,UAAU,CAAC,CAAA;QAC3D,OAAO,UAAU,CAAA;IACnB,CAAC;IAED,IAAI,WAAW;QACb,OAAO,IAAI,CAAC,YAAY,CAAA;IAC1B,CAAC;CACF"}

package/dist/measureTextCanvas.d.ts

@@ -0,0 +1 @@
+export default function measureTextCanvas(text: string, fontSize: number): number;

package/dist/measureTextCanvas.js

@@ -0,0 +1,13 @@
+let canvasHandle;
+export default function measureTextCanvas(text, fontSize) {
+    if (!canvasHandle) {
+        canvasHandle = document.createElement('canvas');
+    }
+    const ctx = canvasHandle.getContext('2d');
+    if (!ctx) {
+        throw new Error('no canvas context');
+    }
+    ctx.font = ctx.font.replace(/\d+px/, `${fontSize}px`);
+    return ctx.measureText(text).width;
+}
+//# sourceMappingURL=measureTextCanvas.js.map

package/dist/measureTextCanvas.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"measureTextCanvas.js","sourceRoot":"","sources":["../src/measureTextCanvas.ts"],"names":[],"mappings":"AAAA,IAAI,YAA2C,CAAA;AAE/C,MAAM,CAAC,OAAO,UAAU,iBAAiB,CAAC,IAAY,EAAE,QAAgB;IACtE,IAAI,CAAC,YAAY,EAAE,CAAC;QAClB,YAAY,GAAG,QAAQ,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAA;IACjD,CAAC;IAED,MAAM,GAAG,GAAG,YAAY,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;IACzC,IAAI,CAAC,GAAG,EAAE,CAAC;QACT,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAA;IACtC,CAAC;IACD,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,QAAQ,IAAI,CAAC,CAAA;IACrD,OAAO,GAAG,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,KAAK,CAAA;AACpC,CAAC"}

package/dist/model.d.ts

@@ -16,13 +16,13 @@ export interface RowDetails {
         end: number;
     };
 }
-interface BasicTrackModel {
+export interface BasicTrackModel {
     id: string;
     name: string;
     associatedRowName?: string;
     height: number;
 }
-interface Structure {
+export interface Structure {
     pdb: string;
     startPos: number;
     endPos: number;
@@ -45,8 +45,8 @@ export interface IBoxTrack {
     ReactComponent: React.FC<any>;
     model: BoxTrackModel;
 }
-type BasicTrack = IBoxTrack | ITextTrack;
-type StructureSnap = SnapshotIn<typeof StructureModel>;
+export type BasicTrack = IBoxTrack | ITextTrack;
+export type StructureSnap = SnapshotIn<typeof StructureModel>;
 export type DialogComponentType = React.LazyExoticComponent<React.FC<any>> | React.FC<any>;
 declare const model: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -81,23 +81,19 @@ declare const model: import("mobx-state-tree").IModelType<{
     colorSchemeName: import("mobx-state-tree").IType<string | undefined, string, string>;
     treeFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
-        uri: import("mobx-state-tree").ISimpleType<string>;
+        uri: import("mobx-state-tree").ISimpleType<string>; /**
+         * #property
+         * draw clickable node bubbles on the tree
+         */
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
             internetAccountType: import("mobx-state-tree").ISimpleType<string>;
-            authInfo: import("mobx-state-tree").IType<any, any, any>; /**
-             * #property
-             * filehandle object for the MSA (which could contain a tree e.g. with
-             * stockholm files)
-             */
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
         }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
-        name: import("mobx-state-tree").ISimpleType<string>; /**
-         * #property
-         *
-         */
+        name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
@@ -107,7 +103,11 @@ declare const model: import("mobx-state-tree").IModelType<{
         uri: string;
         internetAccountId: string | undefined;
         internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
-            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             * a list of "tracks" to display, as box-like glyphs (e.g. protein
+             * domains)
+             */
             authInfo: import("mobx-state-tree").IType<any, any, any>;
         }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
@@ -139,23 +139,19 @@ declare const model: import("mobx-state-tree").IModelType<{
     }>> & import("mobx-state-tree/dist/internal").NonEmptyObject)>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     msaFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
-        uri: import("mobx-state-tree").ISimpleType<string>;
+        uri: import("mobx-state-tree").ISimpleType<string>; /**
+         * #property
+         * draw clickable node bubbles on the tree
+         */
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
             internetAccountType: import("mobx-state-tree").ISimpleType<string>;
-            authInfo: import("mobx-state-tree").IType<any, any, any>; /**
-             * #property
-             * filehandle object for the MSA (which could contain a tree e.g. with
-             * stockholm files)
-             */
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
         }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
-        name: import("mobx-state-tree").ISimpleType<string>; /**
-         * #property
-         *
-         */
+        name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
@@ -165,7 +161,11 @@ declare const model: import("mobx-state-tree").IModelType<{
         uri: string;
         internetAccountId: string | undefined;
         internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
-            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             * a list of "tracks" to display, as box-like glyphs (e.g. protein
+             * domains)
+             */
             authInfo: import("mobx-state-tree").IType<any, any, any>;
         }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
@@ -197,23 +197,19 @@ declare const model: import("mobx-state-tree").IModelType<{
     }>> & import("mobx-state-tree/dist/internal").NonEmptyObject)>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     treeMetadataFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
-        uri: import("mobx-state-tree").ISimpleType<string>;
+        uri: import("mobx-state-tree").ISimpleType<string>; /**
+         * #property
+         * draw clickable node bubbles on the tree
+         */
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
             internetAccountType: import("mobx-state-tree").ISimpleType<string>;
-            authInfo: import("mobx-state-tree").IType<any, any, any>; /**
-             * #property
-             * filehandle object for the MSA (which could contain a tree e.g. with
-             * stockholm files)
-             */
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
         }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
-        name: import("mobx-state-tree").ISimpleType<string>; /**
-         * #property
-         *
-         */
+        name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
         locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
@@ -223,7 +219,11 @@ declare const model: import("mobx-state-tree").IModelType<{
         uri: string;
         internetAccountId: string | undefined;
         internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
-            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             * a list of "tracks" to display, as box-like glyphs (e.g. protein
+             * domains)
+             */
             authInfo: import("mobx-state-tree").IType<any, any, any>;
         }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
@@ -345,13 +345,6 @@ declare const model: import("mobx-state-tree").IModelType<{
      * #volatile
      */
     error: unknown;
-    /**
-     * #volatile
-     */
-    margin: {
-        left: number;
-        top: number;
-    };
     /**
      * #volatile
      */
@@ -758,6 +751,7 @@ declare const model: import("mobx-state-tree").IModelType<{
     exportSVG(opts: {
         theme: Theme;
         includeMinimap?: boolean;
+        exportType: string;
     }): Promise<void>;
     /**
      * #action
@@ -798,7 +792,11 @@ declare const model: import("mobx-state-tree").IModelType<{
         uri: string;
         internetAccountId: string | undefined;
         internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
-            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             * a list of "tracks" to display, as box-like glyphs (e.g. protein
+             * domains)
+             */
             authInfo: import("mobx-state-tree").IType<any, any, any>;
         }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
@@ -814,7 +812,11 @@ declare const model: import("mobx-state-tree").IModelType<{
         uri: string;
         internetAccountId: string | undefined;
         internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
-            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             * a list of "tracks" to display, as box-like glyphs (e.g. protein
+             * domains)
+             */
             authInfo: import("mobx-state-tree").IType<any, any, any>;
         }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
@@ -830,7 +832,11 @@ declare const model: import("mobx-state-tree").IModelType<{
         uri: string;
         internetAccountId: string | undefined;
         internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
-            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             * a list of "tracks" to display, as box-like glyphs (e.g. protein
+             * domains)
+             */
             authInfo: import("mobx-state-tree").IType<any, any, any>;
         }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{