react-msaview 3.0.2 → 3.0.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/bundle/index.js +30 -30
  2. package/dist/parsers/ClustalMSA.d.ts +5 -18
  3. package/dist/util.js +2 -0
  4. package/dist/util.js.map +1 -1
  5. package/dist/version.d.ts +1 -1
  6. package/dist/version.js +1 -1
  7. package/package.json +1 -1
  8. package/src/util.ts +3 -0
  9. package/src/version.ts +1 -1
package/dist/parsers/ClustalMSA.d.ts CHANGED
@@ -2,25 +2,12 @@ import { NodeWithIds } from '../util';
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  export default class ClustalMSA {
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  private MSA;
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  constructor(text: string);
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- getMSA(): {
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- consensus: string;
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- alns: {
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- id: any;
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- seq: any;
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- }[];
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- header: {
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- info: string;
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- version: string;
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- };
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- };
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- getRow(name: string): any;
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- getWidth(): any;
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+ getMSA(): import("clustal-js/dist/types").Results;
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+ getRow(name: string): string;
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+ getWidth(): number;
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  getRowData(): undefined;
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- getHeader(): {
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- info: string;
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- version: string;
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- };
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- getNames(): any[];
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+ getHeader(): import("clustal-js/dist/types").Header;
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+ getNames(): string[];
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  getStructures(): {};
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  get alignmentNames(): never[];
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  getTree(): NodeWithIds;
package/dist/util.js CHANGED
@@ -60,6 +60,8 @@ export function skipBlanks(blanks, arg) {
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  }
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  // basically same as setRadius from https://observablehq.com/@d3/tree-of-life
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  export function setBrLength(d, y0, k) {
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+ // @ts-expect-error
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+ d.len = (y0 += Math.max(d.data.length || 0, 0)) * k;
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  if (d.children) {
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  d.children.forEach(d => {
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  setBrLength(d, y0, k);
package/dist/util.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAE9B,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAE9C,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;AAErB,MAAM,UAAU,SAAS,CACvB,GAAsB,EACtB,EAAsC;IAEtC,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;AACxD,CAAC;AAwBD,MAAM,UAAU,eAAe,CAC7B,IAAU,EACV,MAAM,GAAG,MAAM,EACf,KAAK,GAAG,CAAC;;IAET,MAAM,EAAE,GAAG,GAAG,MAAM,IAAI,KAAK,EAAE,CAAA;IAE/B,OAAO;QACL,GAAG,IAAI;QACP,EAAE;QACF,IAAI,EAAE,IAAI,CAAC,IAAI,IAAI,EAAE;QACrB,SAAS,EACP,CAAA,MAAA,IAAI,CAAC,SAAS,0CAAE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAC3B,eAAe,CAAC,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,EAAE,EAAE,KAAK,GAAG,CAAC,CAAC,CAC5C,KAAI,EAAE;KACV,CAAA;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,WAAmC,EACnC,KAAY;IAEZ,OAAO,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;QACjD,MAAM;QACN,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;KACrD,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,QAAQ,CAAC,GAAY;IACnC,OAAO,GAAG,aAAH,GAAG,uBAAH,GAAG,CACN,KAAK,CAAC,IAAI,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,EACjB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,EACrC,GAAG,CAAC,CAAC,CAAC,EAAE;QACP,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,CAAC,GAClE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAEf,OAAO;YACL,MAAM;YACN,MAAM;YACN,IAAI;YACJ,KAAK,EAAE,CAAC,KAAK;YACb,GAAG,EAAE,CAAC,GAAG;YACT,KAAK,EAAE,CAAC,KAAK;YACb,MAAM;YACN,KAAK;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI;iBACD,KAAK,CAAC,GAAG,CAAC;iBACV,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;iBAClB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;iBAChB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;iBACtB,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC;gBACnB,GAAG,CAAC,IAAI,EAAE;gBACV,kBAAkB,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC;aACpD,CAAC,CACL;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,MAAgB,EAAE,GAAsB;IACjE,IAAI,CAAC,GAAG,EAAE,CAAA;IACV,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACpC,IAAI,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;YACpB,CAAC,EAAE,CAAA;QACL,CAAC;aAAM,CAAC;YACN,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAA;QACb,CAAC;IACH,CAAC;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CACzB,CAA6B,EAC7B,EAAU,EACV,CAAS;IAET,mBAAmB;IACnB,CAAC,CAAC,GAAG,GAAG,CAAC,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAA;IAEnD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;YACrB,WAAW,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;QACvB,CAAC,CAAC,CAAA;IACJ,CAAC;AACH,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,SAAS,CAAC,CAA6B;IACrD,OAAO,CACL,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC1E,CAAA;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,CAA6B;IACpD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,mBAAmB;QACnB,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,QAAQ,CAAA;QACxB,mBAAmB;QACnB,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;QAC7B,mBAAmB;QACnB,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAA;IACnB,CAAC;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,qBAAqB,CACnC,CAAoC,EACpC,QAAiB;IAEjB,IAAI,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,QAAQ,EAAE,CAAC;QAChB,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,QAAQ,CAAC,CAAA;IACxD,CAAC;AACH,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,GAAW,EAAE,GAAW,EAAE,GAAW;IACzD,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,CAAC,CAAA;AAC1C,CAAC"}
package/dist/version.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const version = "3.0.2";
1
+ export declare const version = "3.0.3";
package/dist/version.js CHANGED
@@ -1,2 +1,2 @@
1
- export const version = '3.0.2';
1
+ export const version = '3.0.3';
2
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  //# sourceMappingURL=version.js.map
package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "react-msaview",
3
3
  "author": "Colin",
4
- "version": "3.0.2",
4
+ "version": "3.0.3",
5
5
  "license": "MIT",
6
6
  "main": "dist/index.js",
7
7
  "files": [
package/src/util.ts CHANGED
@@ -115,6 +115,9 @@ export function setBrLength(
115
115
  y0: number,
116
116
  k: number,
117
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  ) {
118
+ // @ts-expect-error
119
+ d.len = (y0 += Math.max(d.data.length || 0, 0)) * k
120
+
118
121
  if (d.children) {
119
122
  d.children.forEach(d => {
120
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  setBrLength(d, y0, k)
package/src/version.ts CHANGED
@@ -1 +1 @@
1
- export const version = '3.0.2'
1
+ export const version = '3.0.3'