react-msaview 3.0.0 → 3.0.1

package/dist/model.js.map

@@ -1 +1 @@
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package/dist/parsers/ClustalMSA.d.ts

@@ -3,7 +3,7 @@ export default class ClustalMSA {
     private MSA;
     constructor(text: string);
     getMSA(): import("clustal-js/dist/types").Results;
-    getRow(name: string): string[] | undefined;
+    getRow(name: string): string;
     getWidth(): number;
     getRowData(): undefined;
     getHeader(): import("clustal-js/dist/types").Header;

package/dist/parsers/ClustalMSA.js

@@ -8,7 +8,7 @@ export default class ClustalMSA {
     }
     getRow(name) {
         var _a;
-        return (_a = this.MSA.alns.find(aln => aln.id === name)) === null || _a === void 0 ? void 0 : _a.seq.split('');
+        return ((_a = this.MSA.alns.find(aln => aln.id === name)) === null || _a === void 0 ? void 0 : _a.seq) || '';
     }
     getWidth() {
         return this.MSA.alns[0].seq.length;

package/dist/parsers/ClustalMSA.js.map

@@ -1 +1 @@
-{"version":3,"file":"ClustalMSA.js","sourceRoot":"","sources":["../../src/parsers/ClustalMSA.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,YAAY,CAAA;AAElC,MAAM,CAAC,OAAO,OAAO,UAAU;IAG7B,YAAY,IAAY;QACtB,IAAI,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,CAAA;IACxB,CAAC;IAED,MAAM;QACJ,OAAO,IAAI,CAAC,GAAG,CAAA;IACjB,CAAC;IAED,MAAM,CAAC,IAAY;;QACjB,OAAO,MAAA,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,KAAK,IAAI,CAAC,0CAAE,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;IAClE,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAA;IACpC,CAAC;IAED,UAAU;QACR,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,SAAS;QACP,OAAO,IAAI,CAAC,GAAG,CAAC,MAAM,CAAA;IACxB,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;IACzC,CAAC;IAED,aAAa;QACX,OAAO,EAAE,CAAA;IACX,CAAC;IAED,IAAI,cAAc;QAChB,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO;QACL,OAAO;YACL,EAAE,EAAE,MAAM;YACV,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,SAAS,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACtC,EAAE,EAAE,IAAI;gBACR,IAAI;gBACJ,SAAS,EAAE,EAAE;aACd,CAAC,CAAC;SACJ,CAAA;IACH,CAAC;IAED,IAAI,YAAY;QACd,OAAO,IAAI,CAAC,GAAG,CAAC,SAAS,CAAA;IAC3B,CAAC;IACD,IAAI,2BAA2B;QAC7B,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,IAAI,MAAM;;QACR,OAAO,CAAA,MAAA,IAAI,CAAC,YAAY,0CAAE,IAAI,EAAE;YAC9B,CAAC,CAAC;gBACE;oBACE,EAAE,EAAE,cAAc;oBAClB,IAAI,EAAE,oBAAoB;oBAC1B,IAAI,EAAE,IAAI,CAAC,YAAY;oBACvB,iBAAiB,EAAE;wBACjB,GAAG,EAAE,OAAO;wBACZ,GAAG,EAAE,MAAM;wBACX,GAAG,EAAE,UAAU;wBACf,GAAG,EAAE,OAAO;qBACb;iBACF;aACF;YACH,CAAC,CAAC,EAAE,CAAA;IACR,CAAC;CACF"}
+{"version":3,"file":"ClustalMSA.js","sourceRoot":"","sources":["../../src/parsers/ClustalMSA.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,YAAY,CAAA;AAElC,MAAM,CAAC,OAAO,OAAO,UAAU;IAG7B,YAAY,IAAY;QACtB,IAAI,CAAC,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,CAAA;IACxB,CAAC;IAED,MAAM;QACJ,OAAO,IAAI,CAAC,GAAG,CAAA;IACjB,CAAC;IAED,MAAM,CAAC,IAAY;;QACjB,OAAO,CAAA,MAAA,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,KAAK,IAAI,CAAC,0CAAE,GAAG,KAAI,EAAE,CAAA;IAC9D,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAA;IACpC,CAAC;IAED,UAAU;QACR,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,SAAS;QACP,OAAO,IAAI,CAAC,GAAG,CAAC,MAAM,CAAA;IACxB,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;IACzC,CAAC;IAED,aAAa;QACX,OAAO,EAAE,CAAA;IACX,CAAC;IAED,IAAI,cAAc;QAChB,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO;QACL,OAAO;YACL,EAAE,EAAE,MAAM;YACV,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,SAAS,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACtC,EAAE,EAAE,IAAI;gBACR,IAAI;gBACJ,SAAS,EAAE,EAAE;aACd,CAAC,CAAC;SACJ,CAAA;IACH,CAAC;IAED,IAAI,YAAY;QACd,OAAO,IAAI,CAAC,GAAG,CAAC,SAAS,CAAA;IAC3B,CAAC;IACD,IAAI,2BAA2B;QAC7B,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,IAAI,MAAM;;QACR,OAAO,CAAA,MAAA,IAAI,CAAC,YAAY,0CAAE,IAAI,EAAE;YAC9B,CAAC,CAAC;gBACE;oBACE,EAAE,EAAE,cAAc;oBAClB,IAAI,EAAE,oBAAoB;oBAC1B,IAAI,EAAE,IAAI,CAAC,YAAY;oBACvB,iBAAiB,EAAE;wBACjB,GAAG,EAAE,OAAO;wBACZ,GAAG,EAAE,MAAM;wBACX,GAAG,EAAE,UAAU;wBACf,GAAG,EAAE,OAAO;qBACb;iBACF;aACF;YACH,CAAC,CAAC,EAAE,CAAA;IACR,CAAC;CACF"}

package/dist/parsers/FastaMSA.d.ts

@@ -7,7 +7,7 @@ export default class FastaMSA {
     };
     getRowData(): undefined;
     getNames(): string[];
-    getRow(name: string): string[];
+    getRow(name: string): string;
     getWidth(): number;
     getStructures(): {};
     get alignmentNames(): never[];

package/dist/parsers/FastaMSA.js

@@ -27,8 +27,8 @@ export default class FastaMSA {
         return Object.keys(this.MSA.seqdata);
     }
     getRow(name) {
-        var _a, _b;
-        return (_b = (_a = this.MSA) === null || _a === void 0 ? void 0 : _a.seqdata[name]) === null || _b === void 0 ? void 0 : _b.split('');
+        var _a;
+        return ((_a = this.MSA) === null || _a === void 0 ? void 0 : _a.seqdata[name]) || '';
     }
     getWidth() {
         var _a;

package/dist/parsers/FastaMSA.js.map

@@ -1 +1 @@
-{"version":3,"file":"FastaMSA.js","sourceRoot":"","sources":["../../src/parsers/FastaMSA.ts"],"names":[],"mappings":"AAEA,SAAS,eAAe,CAAC,IAAY;IACnC,OAAO,IAAI;SACR,KAAK,CAAC,GAAG,CAAC;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SACzB,GAAG,CAAC,SAAS,CAAC,EAAE;QACf,MAAM,CAAC,OAAO,EAAE,GAAG,QAAQ,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACpD,MAAM,CAAC,EAAE,EAAE,GAAG,WAAW,CAAC,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QAC/C,MAAM,cAAc,GAAG,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;QAC5C,MAAM,WAAW,GAAG,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;QACrC,MAAM,QAAQ,GAAG,WAAW,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QAClD,OAAO,EAAE,EAAE,EAAE,WAAW,EAAE,cAAc,EAAE,QAAQ,EAAE,CAAA;IACtD,CAAC,CAAC,CAAA;AACN,CAAC;AACD,MAAM,CAAC,OAAO,OAAO,QAAQ;IAE3B,YAAY,IAAY;QACtB,IAAI,CAAC,GAAG,GAAG;YACT,OAAO,EAAE,MAAM,CAAC,WAAW,CACzB,eAAe,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CACxD;SACF,CAAA;IACH,CAAC;IAED,MAAM;QACJ,OAAO,IAAI,CAAC,GAAG,CAAA;IACjB,CAAC;IAED,UAAU;QACR,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IACtC,CAAC;IAED,MAAM,CAAC,IAAY;;QACjB,OAAO,MAAA,MAAA,IAAI,CAAC,GAAG,0CAAE,OAAO,CAAC,IAAI,CAAC,0CAAE,KAAK,CAAC,EAAE,CAAC,CAAA;IAC3C,CAAC;IAED,QAAQ;;QACN,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,MAAA,IAAI,CAAC,GAAG,0CAAE,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;QAC9C,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,MAAM,CAAA;IACjC,CAAC;IAED,aAAa;QACX,OAAO,EAAE,CAAA;IACX,CAAC;IAED,IAAI,cAAc;QAChB,OAAO,EAAE,CAAA;IACX,CAAC;IAED,SAAS;QACP,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO;QACL,OAAO;YACL,EAAE,EAAE,MAAM;YACV,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,SAAS,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACtC,EAAE,EAAE,IAAI;gBACR,SAAS,EAAE,EAAE;gBACb,IAAI;aACL,CAAC,CAAC;SACJ,CAAA;IACH,CAAC;IAED,IAAI,YAAY;QACd,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,IAAI,2BAA2B;QAC7B,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,IAAI,MAAM;QACR,OAAO,EAAE,CAAA;IACX,CAAC;CACF"}
+{"version":3,"file":"FastaMSA.js","sourceRoot":"","sources":["../../src/parsers/FastaMSA.ts"],"names":[],"mappings":"AAEA,SAAS,eAAe,CAAC,IAAY;IACnC,OAAO,IAAI;SACR,KAAK,CAAC,GAAG,CAAC;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;SACzB,GAAG,CAAC,SAAS,CAAC,EAAE;QACf,MAAM,CAAC,OAAO,EAAE,GAAG,QAAQ,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACpD,MAAM,CAAC,EAAE,EAAE,GAAG,WAAW,CAAC,GAAG,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAA;QAC/C,MAAM,cAAc,GAAG,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;QAC5C,MAAM,WAAW,GAAG,QAAQ,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;QACrC,MAAM,QAAQ,GAAG,WAAW,CAAC,UAAU,CAAC,KAAK,EAAE,EAAE,CAAC,CAAA;QAClD,OAAO,EAAE,EAAE,EAAE,WAAW,EAAE,cAAc,EAAE,QAAQ,EAAE,CAAA;IACtD,CAAC,CAAC,CAAA;AACN,CAAC;AACD,MAAM,CAAC,OAAO,OAAO,QAAQ;IAE3B,YAAY,IAAY;QACtB,IAAI,CAAC,GAAG,GAAG;YACT,OAAO,EAAE,MAAM,CAAC,WAAW,CACzB,eAAe,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CACxD;SACF,CAAA;IACH,CAAC;IAED,MAAM;QACJ,OAAO,IAAI,CAAC,GAAG,CAAA;IACjB,CAAC;IAED,UAAU;QACR,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,QAAQ;QACN,OAAO,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,CAAA;IACtC,CAAC;IAED,MAAM,CAAC,IAAY;;QACjB,OAAO,CAAA,MAAA,IAAI,CAAC,GAAG,0CAAE,OAAO,CAAC,IAAI,CAAC,KAAI,EAAE,CAAA;IACtC,CAAC;IAED,QAAQ;;QACN,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,MAAA,IAAI,CAAC,GAAG,0CAAE,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;QAC9C,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,MAAM,CAAA;IACjC,CAAC;IAED,aAAa;QACX,OAAO,EAAE,CAAA;IACX,CAAC;IAED,IAAI,cAAc;QAChB,OAAO,EAAE,CAAA;IACX,CAAC;IAED,SAAS;QACP,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO;QACL,OAAO;YACL,EAAE,EAAE,MAAM;YACV,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,IAAI;YACZ,SAAS,EAAE,IAAI,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBACtC,EAAE,EAAE,IAAI;gBACR,SAAS,EAAE,EAAE;gBACb,IAAI;aACL,CAAC,CAAC;SACJ,CAAA;IACH,CAAC;IAED,IAAI,YAAY;QACd,OAAO,SAAS,CAAA;IAClB,CAAC;IACD,IAAI,2BAA2B;QAC7B,OAAO,SAAS,CAAA;IAClB,CAAC;IAED,IAAI,MAAM;QACR,OAAO,EAAE,CAAA;IACX,CAAC;CACF"}

package/dist/parsers/StockholmMSA.d.ts

@@ -19,7 +19,7 @@ export default class StockholmMSA {
     private MSA;
     constructor(text: string, currentAlignment: number);
     getMSA(): StockholmEntry;
-    getRow(name: string): string[];
+    getRow(name: string): string;
     getWidth(): number;
     get alignmentNames(): string[];
     getHeader(): {

package/dist/parsers/StockholmMSA.js

@@ -11,8 +11,8 @@ export default class StockholmMSA {
         return this.MSA;
     }
     getRow(name) {
-        var _a, _b;
-        return (_b = (_a = this.MSA) === null || _a === void 0 ? void 0 : _a.seqdata[name]) === null || _b === void 0 ? void 0 : _b.split('');
+        var _a;
+        return ((_a = this.MSA) === null || _a === void 0 ? void 0 : _a.seqdata[name]) || '';
     }
     getWidth() {
         var _a;

package/dist/parsers/StockholmMSA.js.map

@@ -1 +1 @@
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package/dist/util.d.ts

@@ -40,5 +40,6 @@ export declare function skipBlanks(blanks: number[], arg: string | string[]): st
 export declare function setBrLength(d: HierarchyNode<NodeWithIds>, y0: number, k: number): void;
 export declare function maxLength(d: HierarchyNode<NodeWithIds>): number;
 export declare function collapse(d: HierarchyNode<NodeWithIds>): void;
+export declare function filterHiddenLeafNodes(d: HierarchyNode<NodeWithIds> | null, hiddenId?: string): void;
 export declare function clamp(min: number, num: number, max: number): number;
 export {};

package/dist/util.js

@@ -58,16 +58,17 @@ export function skipBlanks(blanks, arg) {
     }
     return s;
 }
+// basically same as setRadius from https://observablehq.com/@d3/tree-of-life
 export function setBrLength(d, y0, k) {
-    var _a;
-    // @ts-expect-error
-    d.len = (y0 += Math.max(d.data.length || 0, 0)) * k;
-    (_a = d.children) === null || _a === void 0 ? void 0 : _a.forEach(d => {
-        setBrLength(d, y0, k);
-    });
+    if (d.children) {
+        d.children.forEach(d => {
+            setBrLength(d, y0, k);
+        });
+    }
 }
+// basically same as maxLength from https://observablehq.com/@d3/tree-of-life
 export function maxLength(d) {
-    return ((d.data.length || 1) + (d.children ? max(d.children, maxLength) || 0 : 0));
+    return ((d.data.length || 0) + (d.children ? max(d.children, maxLength) || 0 : 0));
 }
 // Collapse the node and all it's children, from
 // https://bl.ocks.org/d3noob/43a860bc0024792f8803bba8ca0d5ecd
@@ -81,6 +82,13 @@ export function collapse(d) {
         d.children = null;
     }
 }
+// Collapse the node and all it's children, from
+// https://bl.ocks.org/d3noob/43a860bc0024792f8803bba8ca0d5ecd
+export function filterHiddenLeafNodes(d, hiddenId) {
+    if (d === null || d === void 0 ? void 0 : d.children) {
+        d.children = d.children.filter(f => f.id !== hiddenId);
+    }
+}
 export function clamp(min, num, max) {
     return Math.min(Math.max(num, min), max);
 }

package/dist/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,GAAG,EAAE,MAAM,UAAU,CAAA;AAE9B,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAA;AACvC,OAAO,WAAW,MAAM,sBAAsB,CAAA;AAE9C,MAAM,CAAC,CAAC,WAAW,CAAC,CAAC,CAAA;AAErB,MAAM,UAAU,SAAS,CACvB,GAAsB,EACtB,EAAsC;IAEtC,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;AACxD,CAAC;AAwBD,MAAM,UAAU,eAAe,CAC7B,IAAU,EACV,MAAM,GAAG,MAAM,EACf,KAAK,GAAG,CAAC;;IAET,MAAM,EAAE,GAAG,GAAG,MAAM,IAAI,KAAK,EAAE,CAAA;IAE/B,OAAO;QACL,GAAG,IAAI;QACP,EAAE;QACF,IAAI,EAAE,IAAI,CAAC,IAAI,IAAI,EAAE;QACrB,SAAS,EACP,CAAA,MAAA,IAAI,CAAC,SAAS,0CAAE,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAC3B,eAAe,CAAC,CAAC,EAAE,GAAG,EAAE,IAAI,CAAC,EAAE,EAAE,KAAK,GAAG,CAAC,CAAC,CAC5C,KAAI,EAAE;KACV,CAAA;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,WAAmC,EACnC,KAAY;IAEZ,OAAO,SAAS,CAAC,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC;QACjD,MAAM;QACN,KAAK,CAAC,OAAO,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;KACrD,CAAC,CAAA;AACJ,CAAC;AAED,MAAM,UAAU,QAAQ,CAAC,GAAY;IACnC,OAAO,GAAG,aAAH,GAAG,uBAAH,GAAG,CACN,KAAK,CAAC,IAAI,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,EACjB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,EACrC,GAAG,CAAC,CAAC,CAAC,EAAE;QACP,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,GAAG,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,CAAC,GAClE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QAEf,OAAO;YACL,MAAM;YACN,MAAM;YACN,IAAI;YACJ,KAAK,EAAE,CAAC,KAAK;YACb,GAAG,EAAE,CAAC,GAAG;YACT,KAAK,EAAE,CAAC,KAAK;YACb,MAAM;YACN,KAAK;YACL,GAAG,MAAM,CAAC,WAAW,CACnB,IAAI;iBACD,KAAK,CAAC,GAAG,CAAC;iBACV,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;iBAClB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;iBAChB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;iBACtB,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,EAAE,CAAC;gBACnB,GAAG,CAAC,IAAI,EAAE;gBACV,kBAAkB,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC;aACpD,CAAC,CACL;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,UAAU,CAAC,MAAgB,EAAE,GAAsB;IACjE,IAAI,CAAC,GAAG,EAAE,CAAA;IACV,IAAI,CAAC,GAAG,CAAC,CAAA;IACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACpC,IAAI,CAAC,KAAK,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;YACpB,CAAC,EAAE,CAAA;QACL,CAAC;aAAM,CAAC;YACN,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAA;QACb,CAAC;IACH,CAAC;IACD,OAAO,CAAC,CAAA;AACV,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,WAAW,CACzB,CAA6B,EAC7B,EAAU,EACV,CAAS;IAET,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;YACrB,WAAW,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,CAAA;QACvB,CAAC,CAAC,CAAA;IACJ,CAAC;AACH,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,SAAS,CAAC,CAA6B;IACrD,OAAO,CACL,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,EAAE,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAC1E,CAAA;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,QAAQ,CAAC,CAA6B;IACpD,IAAI,CAAC,CAAC,QAAQ,EAAE,CAAC;QACf,mBAAmB;QACnB,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,QAAQ,CAAA;QACxB,mBAAmB;QACnB,CAAC,CAAC,SAAS,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAA;QAC7B,mBAAmB;QACnB,CAAC,CAAC,QAAQ,GAAG,IAAI,CAAA;IACnB,CAAC;AACH,CAAC;AAED,gDAAgD;AAChD,8DAA8D;AAC9D,MAAM,UAAU,qBAAqB,CACnC,CAAoC,EACpC,QAAiB;IAEjB,IAAI,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,QAAQ,EAAE,CAAC;QAChB,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,KAAK,QAAQ,CAAC,CAAA;IACxD,CAAC;AACH,CAAC;AAED,MAAM,UAAU,KAAK,CAAC,GAAW,EAAE,GAAW,EAAE,GAAW;IACzD,OAAO,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,GAAG,CAAC,CAAA;AAC1C,CAAC"}

package/dist/version.d.ts

@@ -1 +1 @@
-export declare const version = "3.0.0";
+export declare const version = "3.0.1";

package/dist/version.js

@@ -1,2 +1,2 @@
-export const version = '3.0.0';
+export const version = '3.0.1';
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "react-msaview",
   "author": "Colin",
-  "version": "3.0.0",
+  "version": "3.0.1",
   "license": "MIT",
   "main": "dist/index.js",
   "files": [

package/src/components/Header.tsx

@@ -1,5 +1,5 @@
 import React, { Suspense, lazy, useState } from 'react'
-import { IconButton, Typography } from '@mui/material'
+import { IconButton } from '@mui/material'
 import { observer } from 'mobx-react'
 
 // locals
@@ -11,23 +11,17 @@ import Settings from '@mui/icons-material/Settings'
 import Help from '@mui/icons-material/Help'
 import Assignment from '@mui/icons-material/Assignment'
 import List from '@mui/icons-material/List'
+
+// locals
 import ZoomControls from './ZoomControls'
 import MultiAlignmentSelector from './MultiAlignmentSelector'
+import HeaderInfoArea from './HeaderInfoArea'
 
 const SettingsDialog = lazy(() => import('./dialogs/SettingsDialog'))
 const AboutDialog = lazy(() => import('./dialogs/AboutDialog'))
 const MetadataDialog = lazy(() => import('./dialogs/MetadataDialog'))
 const TracklistDialog = lazy(() => import('./dialogs/TracklistDialog'))
 
-const InfoArea = observer(({ model }: { model: MsaViewModel }) => {
-  const { mouseOverRowName } = model
-  return (
-    <div>
-      <Typography display="inline">Row name: {mouseOverRowName}</Typography>
-    </div>
-  )
-})
-
 const Header = observer(function ({ model }: { model: MsaViewModel }) {
   const [settingsDialogViz, setSettingsDialogViz] = useState(false)
   const [aboutDialogViz, setAboutDialogViz] = useState(false)
@@ -89,7 +83,7 @@ const Header = observer(function ({ model }: { model: MsaViewModel }) {
       </Suspense>
       <MultiAlignmentSelector model={model} />
       <ZoomControls model={model} />
-      <InfoArea model={model} />
+      <HeaderInfoArea model={model} />
       <Spacer />
       <IconButton onClick={() => setAboutDialogViz(true)}>
         <Help />

package/src/components/HeaderInfoArea.tsx

@@ -0,0 +1,21 @@
+import React from 'react'
+import { Typography } from '@mui/material'
+import { observer } from 'mobx-react'
+
+// locals
+import { MsaViewModel } from '../model'
+
+const HeaderInfoArea = observer(({ model }: { model: MsaViewModel }) => {
+  const { mouseOverRowName, mouseCol } = model
+  return (
+    <div>
+      {mouseOverRowName && mouseCol !== undefined ? (
+        <Typography>
+          {mouseOverRowName}:{model.relativePxToBp(mouseOverRowName, mouseCol)}
+        </Typography>
+      ) : null}
+    </div>
+  )
+})
+
+export default HeaderInfoArea

package/src/components/MSAPanel/Loading.tsx

@@ -0,0 +1,16 @@
+import { CircularProgress, Typography } from '@mui/material'
+import React from 'react'
+export default function Loading() {
+  return (
+    <div
+      style={{
+        position: 'absolute',
+        left: '50%',
+        top: '50%',
+      }}
+    >
+      <CircularProgress />
+      <Typography>Loading...</Typography>
+    </div>
+  )
+}

package/src/components/MSAPanel/MSACanvas.tsx

@@ -1,11 +1,11 @@
 import React, { useEffect, useState, useRef } from 'react'
-import { Typography, CircularProgress } from '@mui/material'
 import { observer } from 'mobx-react'
 import normalizeWheel from 'normalize-wheel'
 
 // locals
 import { MsaViewModel } from '../../model'
 import MSABlock from './MSABlock'
+import Loading from './Loading'
 
 const MSACanvas = observer(function ({ model }: { model: MsaViewModel }) {
   const { MSA, msaFilehandle, height, msaAreaWidth, blocks2d } = model
@@ -136,19 +136,4 @@ const MSACanvas = observer(function ({ model }: { model: MsaViewModel }) {
   )
 })
 
-function Loading() {
-  return (
-    <div
-      style={{
-        position: 'absolute',
-        left: '50%',
-        top: '50%',
-      }}
-    >
-      <CircularProgress />
-      <Typography>Loading...</Typography>
-    </div>
-  )
-}
-
 export default MSACanvas

package/src/components/MSAPanel/MSAMouseoverCanvas.tsx

@@ -1,58 +1,10 @@
 import React, { useEffect, useRef } from 'react'
 import { observer } from 'mobx-react'
+import { autorun } from 'mobx'
 
 // locals
 import { MsaViewModel } from '../../model'
-import { autorun } from 'mobx'
-
-function renderMouseover({
-  ctx,
-  model,
-}: {
-  ctx: CanvasRenderingContext2D
-  model: MsaViewModel
-}) {
-  const {
-    mouseCol,
-    colWidth,
-    treeAreaWidth,
-    resizeHandleWidth,
-    width,
-    height,
-    rowHeight,
-    scrollX,
-    scrollY,
-    mouseRow,
-    // @ts-expect-error
-    mouseCol2,
-    minimapHeight,
-    totalTrackAreaHeight,
-  } = model
-  ctx.resetTransform()
-  ctx.clearRect(0, 0, width, height)
-
-  if (mouseCol !== undefined) {
-    ctx.fillStyle = 'rgba(0,0,0,0.15)'
-    const x =
-      (mouseCol - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth
-
-    ctx.fillRect(x, minimapHeight, colWidth, height)
-  }
-
-  if (mouseRow !== undefined) {
-    ctx.fillStyle = 'rgba(0,0,0,0.15)'
-    const y =
-      mouseRow * rowHeight + scrollY + minimapHeight + totalTrackAreaHeight
-    ctx.fillRect(treeAreaWidth + resizeHandleWidth, y, width, rowHeight)
-  }
-  if (mouseCol2 !== undefined) {
-    ctx.fillStyle = 'rgba(255,255,0,0.2)'
-    const x =
-      (mouseCol2 - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth
-
-    ctx.fillRect(x, 0, colWidth, height)
-  }
-}
+import { renderMouseover } from './renderMSAMouseover'
 
 const MSAMouseoverCanvas = observer(function ({
   model,

package/src/components/MSAPanel/renderMSABlock.ts

@@ -87,7 +87,6 @@ function drawTiles({
     rowHeight,
   } = model
 
-  // eslint-disable-next-line @typescript-eslint/no-floating-promises
   for (const node of visibleLeaves) {
     const {
       // @ts-expect-error
@@ -143,7 +142,6 @@ function drawText({
         x: y,
         data: { name },
       } = node
-
       const str = columns[name]?.slice(xStart, xEnd)
       for (let i = 0; i < str?.length; i++) {
         const letter = str[i]

package/src/components/MSAPanel/renderMSAMouseover.ts

@@ -0,0 +1,51 @@
+import { MsaViewModel } from '../../model'
+
+export function renderMouseover({
+  ctx,
+  model,
+}: {
+  ctx: CanvasRenderingContext2D
+  model: MsaViewModel
+}) {
+  const {
+    mouseCol,
+    colWidth,
+    treeAreaWidth,
+    resizeHandleWidth,
+    width,
+    height,
+    rowHeight,
+    scrollX,
+    scrollY,
+    mouseRow,
+    // @ts-expect-error
+    mouseCol2,
+    minimapHeight,
+    totalTrackAreaHeight,
+  } = model
+  ctx.resetTransform()
+  ctx.clearRect(0, 0, width, height)
+  console.log({ mouseCol })
+
+  if (mouseCol !== undefined) {
+    ctx.fillStyle = 'rgba(0,0,0,0.15)'
+    const x =
+      (mouseCol - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth
+
+    ctx.fillRect(x, minimapHeight, colWidth, height)
+  }
+
+  if (mouseRow !== undefined) {
+    ctx.fillStyle = 'rgba(0,0,0,0.15)'
+    const y =
+      mouseRow * rowHeight + scrollY + minimapHeight + totalTrackAreaHeight
+    ctx.fillRect(treeAreaWidth + resizeHandleWidth, y, width, rowHeight)
+  }
+  if (mouseCol2 !== undefined) {
+    ctx.fillStyle = 'rgba(255,255,0,0.2)'
+    const x =
+      (mouseCol2 - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth
+
+    ctx.fillRect(x, 0, colWidth, height)
+  }
+}

package/src/components/Minimap.tsx

@@ -24,23 +24,23 @@ const Minimap = observer(function ({ model }: { model: MsaViewModel }) {
   const fill = 'rgba(66, 119, 127, 0.3)'
 
   useEffect(() => {
-    if (mouseDown !== undefined) {
-      function fn(event: MouseEvent) {
-        if (mouseDown !== undefined) {
-          if (!scheduled.current) {
-            scheduled.current = true
-            window.requestAnimationFrame(() => {
-              model.setScrollX(
-                mouseDown.scrollX - (event.clientX - mouseDown.clientX) / unit,
-              )
-              scheduled.current = false
-            })
-          }
+    function fn(event: MouseEvent) {
+      if (mouseDown !== undefined) {
+        if (!scheduled.current) {
+          scheduled.current = true
+          window.requestAnimationFrame(() => {
+            model.setScrollX(
+              mouseDown.scrollX - (event.clientX - mouseDown.clientX) / unit,
+            )
+            scheduled.current = false
+          })
         }
       }
-      function fn2() {
-        setMouseDown(undefined)
-      }
+    }
+    function fn2() {
+      setMouseDown(undefined)
+    }
+    if (mouseDown !== undefined) {
       document.addEventListener('mousemove', fn)
       document.addEventListener('mouseup', fn2)
       return () => {