react-msaview 2.1.4 → 3.0.0

package/dist/DialogQueue.d.ts

@@ -0,0 +1,25 @@
+import { DialogComponentType } from '@jbrowse/core/util';
+/**
+ * #stateModel DialogQueueSessionMixin
+ */
+export declare function DialogQueueSessionMixin(): import("mobx-state-tree").IModelType<{}, {
+    queueOfDialogs: [DialogComponentType, any][];
+} & {
+    /**
+     * #getter
+     */
+    readonly DialogComponent: DialogComponentType;
+    /**
+     * #getter
+     */
+    readonly DialogProps: any;
+} & {
+    /**
+     * #action
+     */
+    removeActiveDialog(): void;
+    /**
+     * #action
+     */
+    queueDialog(cb: (doneCallback: () => void) => [DialogComponentType, unknown]): void;
+}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/DialogQueue.js

@@ -0,0 +1,46 @@
+import { types } from 'mobx-state-tree';
+/**
+ * #stateModel DialogQueueSessionMixin
+ */
+export function DialogQueueSessionMixin() {
+    return types
+        .model('DialogQueueSessionMixin', {})
+        .volatile(() => ({
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        queueOfDialogs: [],
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get DialogComponent() {
+            var _a;
+            return (_a = self.queueOfDialogs[0]) === null || _a === void 0 ? void 0 : _a[0];
+        },
+        /**
+         * #getter
+         */
+        get DialogProps() {
+            var _a;
+            return (_a = self.queueOfDialogs[0]) === null || _a === void 0 ? void 0 : _a[1];
+        },
+    }))
+        .actions(self => ({
+        /**
+         * #action
+         */
+        removeActiveDialog() {
+            self.queueOfDialogs = self.queueOfDialogs.slice(1);
+        },
+        /**
+         * #action
+         */
+        queueDialog(cb) {
+            const [component, props] = cb(() => {
+                this.removeActiveDialog();
+            });
+            self.queueOfDialogs = [...self.queueOfDialogs, [component, props]];
+        },
+    }));
+}
+//# sourceMappingURL=DialogQueue.js.map

package/dist/DialogQueue.js.map

@@ -0,0 +1 @@
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package/dist/UniprotTrack.js.map

@@ -1 +1 @@
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package/dist/colorSchemes.js.map

@@ -1 +1 @@
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package/dist/components/BoxTrackBlock.js

@@ -3,7 +3,7 @@ import { observer } from 'mobx-react';
 import { getSnapshot, isStateTreeNode } from 'mobx-state-tree';
 import Layout from '../layout';
 const BoxTrackBlock = observer(function ({ track, model, offsetX, }) {
-    const { blockSize, colWidth, blanks, rowHeight, highResScaleFactor, scrollX, } = model;
+    const { blockSize, colWidth, blanks, rowHeight, highResScaleFactor, fontSize, scrollX, } = model;
     const { height, features, associatedRowName } = track.model;
     const feats = isStateTreeNode(features)
         ? // @ts-expect-error
@@ -44,7 +44,7 @@ const BoxTrackBlock = observer(function ({ track, model, offsetX, }) {
         ctx.clearRect(0, 0, blockSize, height);
         ctx.translate(-offsetX, 0);
         ctx.textAlign = 'center';
-        ctx.font = ctx.font.replace(/\d+px/, `${Math.max(8, rowHeight - 8)}px`);
+        ctx.font = ctx.font.replace(/\d+px/, `${fontSize}px`);
         const xStart = Math.max(0, Math.floor(offsetX / colWidth));
         ctx.fillStyle = 'goldenrod';
         layout.rectangles.forEach(value => {
@@ -57,6 +57,7 @@ const BoxTrackBlock = observer(function ({ track, model, offsetX, }) {
         });
     }, [
         associatedRowName,
+        fontSize,
         blockSize,
         colWidth,
         layout.rectangles,

package/dist/components/BoxTrackBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"BoxTrackBlock.js","sourceRoot":"","sources":["../../src/components/BoxTrackBlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AACzD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAA;AAI9D,OAAO,MAAM,MAAM,WAAW,CAAA;AAO9B,MAAM,aAAa,GAAG,QAAQ,CAAC,UAAU,EACvC,KAAK,EACL,KAAK,EACL,OAAO,GAKR;IACC,MAAM,EACJ,SAAS,EACT,QAAQ,EACR,MAAM,EACN,SAAS,EACT,kBAAkB,EAClB,QAAQ,EACR,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAC,KAAK,CAAA;IAE3D,MAAM,KAAK,GAAW,eAAe,CAAC,QAAQ,CAAC;QAC7C,CAAC,CAAC,mBAAmB;YACnB,WAAW,CAAC,QAAQ,CAAC;QACvB,CAAC,CAAC,QAAQ,CAAA;IAEZ,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,EAAE;QAC1B,MAAM,IAAI,GAAG,IAAI,MAAM,EAAE,CAAA;QAEzB,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,OAAO,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE;YAChC,MAAM,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,OAAO,CAAA;YAC9B,IAAI,iBAAiB,EAAE,CAAC;gBACtB,MAAM,CAAC,GAAG,KAAK,CAAC,iBAAiB,CAAC,iBAAiB,EAAE,KAAK,GAAG,CAAC,CAAC,CAAA;gBAC/D,MAAM,CAAC,GAAG,KAAK,CAAC,iBAAiB,CAAC,iBAAiB,EAAE,GAAG,CAAC,CAAA;gBACzD,IAAI,CAAC,OAAO,CAAC,GAAG,KAAK,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,OAAO,CAAC,CAAA;YACpD,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,GAAG,KAAK,CAAC,YAAY,CAAC,KAAK,GAAG,CAAC,CAAC,CAAA;gBACvC,MAAM,CAAC,GAAG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAA;gBACjC,IAAI,CAAC,OAAO,CAAC,GAAG,KAAK,EAAE,EAAE,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,OAAO,CAAC,CAAA;YACpD,CAAC;QACH,CAAC,CAAC,CAAA;QACF,OAAO,IAAI,CAAA;QAEX,yCAAyC;QACzC,uDAAuD;IACzD,CAAC,EAAE,CAAC,SAAS,EAAE,KAAK,EAAE,iBAAiB,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IAExD,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,MAAM,QAAQ,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAChD,MAAM,YAAY,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAEpD,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;YACjB,OAAM;QACR,CAAC;QAED,MAAM,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QACxC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAA;QACjD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,MAAM,CAAC,CAAA;QACtC,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;QAC1B,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;QACxB,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,QAAQ,IAAI,CAAC,CAAA;QAErD,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAA;QAC1D,GAAG,CAAC,SAAS,GAAG,WAAW,CAAA;QAC3B,MAAM,CAAC,UAAU,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;YAChC,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;YAExC,MAAM,EAAE,GAAG,CAAC,IAAI,GAAG,MAAM,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAA;YACtE,MAAM,EAAE,GAAG,CAAC,IAAI,GAAG,MAAM,CAAC,GAAG,QAAQ,GAAG,OAAO,GAAG,CAAC,OAAO,GAAG,QAAQ,CAAC,CAAA;YAEtE,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC;gBAChB,GAAG,CAAC,QAAQ,CAAC,EAAE,EAAE,IAAI,EAAE,EAAE,GAAG,EAAE,EAAE,CAAC,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAA;YACpD,CAAC;QACH,CAAC,CAAC,CAAA;IACJ,CAAC,EAAE;QACD,iBAAiB;QACjB,QAAQ;QACR,SAAS;QACT,QAAQ;QACR,MAAM,CAAC,UAAU;QACjB,KAAK;QACL,SAAS;QACT,MAAM;QACN,OAAO;QACP,kBAAkB;QAClB,QAAQ;QACR,MAAM;KACP,CAAC,CAAA;IAEF,SAAS,CAAC,GAAG,EAAE;;QACb,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,CAAC;YACtB,OAAM;QACR,CAAC;QAED,MAAM,GAAG,GAAG,QAAQ,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;QAC7C,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QAED,0CAA0C;QAC1C,GAAG,CAAC,cAAc,EAAE,CAAA;QACpB,GAAG,CAAC,KAAK,CAAC,kBAAkB,EAAE,kBAAkB,CAAC,CAAA;QACjD,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,EAAE,SAAS,EAAE,MAAM,CAAC,CAAA;QACtC,GAAG,CAAC,SAAS,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;QAC1B,GAAG,CAAC,SAAS,GAAG,QAAQ,CAAA;QACxB,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,GAAG,CAAC,CAAC,IAAI,CAAC,CAAA;QAEvE,GAAG,CAAC,SAAS,GAAG,OAAO,CAAA;QACvB,GAAG,CAAC,SAAS,GAAG,MAAM,CAAA;QACtB,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,UAAU,CAAC,MAAM,EAAE,EAAE,CAAC;YAC/C,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;YAE9C,MAAM,EAAE,GAAG,IAAI,GAAG,QAAQ,CAAA;YAC1B,MAAM,EAAE,GAAG,IAAI,GAAG,QAAQ,CAAA;YAC1B,8DAA8D;YAC9D,MAAM,OAAO,GAAG,IAAW,CAAA;YAE3B,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC;gBAChB,MAAM,IAAI,GAAG,MAAA,MAAA,OAAO,CAAC,UAAU,0CAAE,IAAI,0CAAG,CAAC,CAAC,CAAA;gBAC1C,MAAM,IAAI,GAAG,MAAA,MAAA,OAAO,CAAC,UAAU,0CAAE,IAAI,0CAAG,CAAC,CAAC,CAAA;gBAC1C,MAAM,IAAI,GAAG,OAAO,CAAC,IAAI,CAAA;gBACzB,GAAG,CAAC,QAAQ,CACV,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,EAC/C,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,EACpC,IAAI,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CACrB,CAAA;YACH,CAAC;QACH,CAAC;IACH,CAAC,EAAE;QACD,SAAS;QACT,QAAQ;QACR,OAAO;QACP,kBAAkB;QAClB,MAAM;QACN,MAAM,CAAC,UAAU;QACjB,OAAO;QACP,QAAQ;QACR,KAAK;QACL,SAAS;QACT,MAAM;KACP,CAAC,CAAA;IAEF,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CACxB;QACE,gCACE,GAAG,EAAE,GAAG,EACR,MAAM,EAAE,MAAM,GAAG,kBAAkB,EACnC,KAAK,EAAE,SAAS,GAAG,kBAAkB,EACrC,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,IAAI,EAAE,OAAO,GAAG,OAAO;gBACvB,KAAK,EAAE,SAAS;gBAChB,MAAM;aACP,GACD;QACF,gCACE,GAAG,EAAE,QA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package/dist/components/Header.js

@@ -9,22 +9,18 @@ import Assignment from '@mui/icons-material/Assignment';
 import List from '@mui/icons-material/List';
 import ZoomControls from './ZoomControls';
 import MultiAlignmentSelector from './MultiAlignmentSelector';
-const SettingsDialog = lazy(() => import('./dialogs/SettingsDlg'));
-const AboutDialog = lazy(() => import('./dialogs/AboutDlg'));
-const MetadataDialog = lazy(() => import('./dialogs/MetadataDlg'));
-const TracklistDialog = lazy(() => import('./dialogs/TracklistDlg'));
+const SettingsDialog = lazy(() => import('./dialogs/SettingsDialog'));
+const AboutDialog = lazy(() => import('./dialogs/AboutDialog'));
+const MetadataDialog = lazy(() => import('./dialogs/MetadataDialog'));
+const TracklistDialog = lazy(() => import('./dialogs/TracklistDialog'));
 const InfoArea = observer(({ model }) => {
-    const { mouseOverRowName, mouseCol } = model;
+    const { mouseOverRowName } = model;
     return (React.createElement("div", null,
         React.createElement(Typography, { display: "inline" },
             "Row name: ",
-            mouseOverRowName),
-        React.createElement("span", { style: { marginLeft: 10 } }),
-        React.createElement(Typography, { display: "inline" },
-            "Position: ",
-            mouseCol)));
+            mouseOverRowName)));
 });
-const Header = observer(({ model }) => {
+const Header = observer(function ({ model }) {
     const [settingsDialogViz, setSettingsDialogViz] = useState(false);
     const [aboutDialogViz, setAboutDialogViz] = useState(false);
     const [detailsDialogViz, setMetadataDialogViz] = useState(false);
@@ -33,11 +29,12 @@ const Header = observer(({ model }) => {
         React.createElement(IconButton, { onClick: async () => {
                 try {
                     model.setData({ tree: '', msa: '' });
-                    await model.setTreeFilehandle(undefined);
-                    await model.setMSAFilehandle(undefined);
+                    model.clearSelectedStructures();
                     model.setScrollY(0);
                     model.setScrollX(0);
                     model.setCurrentAlignment(0);
+                    await model.setTreeFilehandle(undefined);
+                    await model.setMSAFilehandle(undefined);
                 }
                 catch (e) {
                     console.error(e);

package/dist/components/Header.js.map

@@ -1 +1 @@
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package/dist/components/ImportForm/ImportFormExamples.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+import { MsaViewModel } from '../../model';
+declare const ImportFormExamples: ({ model, }: {
+    model: MsaViewModel;
+}) => React.JSX.Element;
+export default ImportFormExamples;

package/dist/components/ImportForm/ImportFormExamples.js

@@ -0,0 +1,50 @@
+import React from 'react';
+import { Typography, Link } from '@mui/material';
+import { observer } from 'mobx-react';
+import { smallTree, smallMSA, smallMSAOnly } from './data/seq2';
+import { load } from './util';
+const ListItem = ({ onClick, model, children, }) => (React.createElement("li", null,
+    React.createElement(Link, { onClick: event => {
+            model.setError(undefined);
+            event.preventDefault();
+            onClick();
+        }, href: "#" },
+        React.createElement(Typography, { display: "inline" }, children))));
+const ImportFormExamples = observer(function ({ model, }) {
+    return (React.createElement("ul", null,
+        React.createElement(ListItem, { model: model, onClick: () => load(model, undefined, {
+                uri: 'https://jbrowse.org/genomes/newick_trees/sarscov2phylo.pub.ft.nh',
+                locationType: 'UriLocation',
+            }) }, "230k COVID-19 samples (tree only)"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                model.setData({ msa: smallMSA, tree: smallTree });
+            } }, "Small protein MSA+tree"),
+        React.createElement(ListItem, { model: model, onClick: () => {
+                model.setData({ msa: smallMSAOnly });
+            } }, "Small MSA only"),
+        React.createElement(ListItem, { model: model, onClick: () => load(model, {
+                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/pfam-cov2.stock',
+                locationType: 'UriLocation',
+            }) }, "PFAM SARS-CoV2 multi-stockholm"),
+        React.createElement(ListItem, { model: model, onClick: () => load(model, {
+                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/Lysine.stock',
+                locationType: 'UriLocation',
+            }) }, "Lysine stockholm file"),
+        React.createElement(ListItem, { model: model, onClick: () => load(model, {
+                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/PF01601_full.txt',
+                locationType: 'UriLocation',
+            }) }, "PF01601 stockholm file (SARS-CoV2 spike protein)"),
+        React.createElement(ListItem, { model: model, onClick: () => load(model, {
+                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/europe_covid.fa',
+                locationType: 'UriLocation',
+            }) }, "Europe COVID full genomes (LR883044.1 and 199 other sequences)"),
+        React.createElement(ListItem, { model: model, onClick: () => load(model, {
+                uri: '/rhv_test-only.aligned_with_mafft_auto.fa',
+                locationType: 'UriLocation',
+            }, {
+                uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.nh',
+                locationType: 'UriLocation',
+            }) }, "MAFFT+VeryFastTree(17.9k samples)")));
+});
+export default ImportFormExamples;
+//# sourceMappingURL=ImportFormExamples.js.map

package/dist/components/ImportForm/ImportFormExamples.js.map

@@ -0,0 +1 @@
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package/dist/components/ImportForm/data/seq2.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"seq2.js","sourceRoot":"","sources":["../../../../src/components/ImportForm/data/seq2.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,QAAQ,GAAG;;;;;;;;;;;;;CAavB,CAAA;AAED,MAAM,CAAC,MAAM,YAAY,GAAG;;;;;;;;;;;;;;;;iDAgBqB,CAAA;AAEjD,MAAM,CAAC,MAAM,SAAS,GACpB,+nBAA+nB,CAAA"}

package/dist/components/{ImportForm.d.ts → ImportForm/index.d.ts}

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../model';
+import { MsaViewModel } from '../../model';
 declare const _default: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/ImportForm/index.js

@@ -0,0 +1,31 @@
+import React, { useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, Container, Grid, Typography } from '@mui/material';
+import { FileSelector } from '@jbrowse/core/ui';
+import { load } from './util';
+import ImportFormExamples from './ImportFormExamples';
+export default observer(({ model }) => {
+    const [msaFile, setMsaFile] = useState();
+    const [treeFile, setTreeFile] = useState();
+    const { error } = model;
+    return (React.createElement(Container, null,
+        React.createElement("div", { style: { width: '50%' } },
+            error ? (React.createElement("div", { style: { padding: 20 } },
+                React.createElement(Typography, { color: "error" },
+                    "Error: ",
+                    `${error}`))) : null,
+            React.createElement(Typography, null, "Open an MSA file (stockholm or clustal format) and/or a tree file (newick format)."),
+            React.createElement(Typography, { color: "error" }, "Note: you can open up just an MSA or just a tree, both are not required. Some MSA files e.g. stockholm format have an embedded tree also and this is fine, and opening a separate tree file is not required.")),
+        React.createElement(Grid, { container: true, spacing: 10, justifyContent: "center", alignItems: "center" },
+            React.createElement(Grid, { item: true },
+                React.createElement(Typography, null, "MSA file or URL"),
+                React.createElement(FileSelector, { location: msaFile, setLocation: setMsaFile }),
+                React.createElement(Typography, null, "Tree file or URL"),
+                React.createElement(FileSelector, { location: treeFile, setLocation: setTreeFile })),
+            React.createElement(Grid, { item: true },
+                React.createElement(Button, { onClick: () => load(model, msaFile, treeFile), variant: "contained", color: "primary", disabled: !msaFile && !treeFile }, "Open")),
+            React.createElement(Grid, { item: true },
+                React.createElement(Typography, null, "Examples"),
+                React.createElement(ImportFormExamples, { model: model })))));
+});
+//# sourceMappingURL=index.js.map

package/dist/components/ImportForm/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/components/ImportForm/index.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAK/C,OAAO,EAAE,IAAI,EAAE,MAAM,QAAQ,CAAA;AAC7B,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AAErD,eAAe,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA2B,EAAE,EAAE;IAC7D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACtD,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,QAAQ,EAAgB,CAAA;IACxD,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IAEvB,OAAO,CACL,oBAAC,SAAS;QACR,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE;YACzB,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE;gBACzB,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO;;oBAAS,GAAG,KAAK,EAAE,CAAc,CACtD,CACP,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,UAAU,6FAGE;YACb,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,mNAKZ,CACT;QAEN,oBAAC,IAAI,IAAC,SAAS,QAAC,OAAO,EAAE,EAAE,EAAE,cAAc,EAAC,QAAQ,EAAC,UAAU,EAAC,QAAQ;YACtE,oBAAC,IAAI,IAAC,IAAI;gBACR,oBAAC,UAAU,0BAA6B;gBACxC,oBAAC,YAAY,IAAC,QAAQ,EAAE,OAAO,EAAE,WAAW,EAAE,UAAU,GAAI;gBAC5D,oBAAC,UAAU,2BAA8B;gBACzC,oBAAC,YAAY,IAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,EAAE,WAAW,GAAI,CACzD;YAEP,oBAAC,IAAI,IAAC,IAAI;gBACR,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,OAAO,EAAE,QAAQ,CAAC,EAC7C,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,CAAC,OAAO,IAAI,CAAC,QAAQ,WAGxB,CACJ;YAEP,oBAAC,IAAI,IAAC,IAAI;gBACR,oBAAC,UAAU,mBAAsB;gBACjC,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CAC/B,CACF,CACG,CACb,CAAA;AACH,CAAC,CAAC,CAAA"}

package/dist/components/ImportForm/util.d.ts

@@ -0,0 +1,3 @@
+import { FileLocation } from '@jbrowse/core/util';
+import { MsaViewModel } from '../../model';
+export declare function load(model: MsaViewModel, msaFile?: FileLocation, treeFile?: FileLocation): Promise<void>;

package/dist/components/ImportForm/util.js

@@ -0,0 +1,15 @@
+export async function load(model, msaFile, treeFile) {
+    model.setError(undefined);
+    try {
+        if (msaFile) {
+            await model.setMSAFilehandle(msaFile);
+        }
+        if (treeFile) {
+            await model.setTreeFilehandle(treeFile);
+        }
+    }
+    catch (e) {
+        model.setError(e);
+    }
+}
+//# sourceMappingURL=util.js.map

package/dist/components/ImportForm/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/components/ImportForm/util.ts"],"names":[],"mappings":"AAGA,MAAM,CAAC,KAAK,UAAU,IAAI,CACxB,KAAmB,EACnB,OAAsB,EACtB,QAAuB;IAEvB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;IACzB,IAAI,CAAC;QACH,IAAI,OAAO,EAAE,CAAC;YACZ,MAAM,KAAK,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAA;QACvC,CAAC;QACD,IAAI,QAAQ,EAAE,CAAC;YACb,MAAM,KAAK,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAA;QACzC,CAAC;IACH,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACnB,CAAC;AACH,CAAC"}

package/dist/components/{MSABlock.d.ts → MSAPanel/MSABlock.d.ts}

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../model';
+import { MsaViewModel } from '../../model';
 declare const MSABlock: ({ model, offsetX, offsetY, }: {
     model: MsaViewModel;
     offsetX: number;

package/dist/components/MSAPanel/MSABlock.js

@@ -0,0 +1,46 @@
+import React, { useEffect, useRef, useMemo } from 'react';
+import { autorun } from 'mobx';
+import { useTheme } from '@mui/material';
+import { observer } from 'mobx-react';
+// locals
+import { renderBlock } from './renderMSABlock';
+import { colorContrast } from '../../util';
+const MSABlock = observer(function ({ model, offsetX, offsetY, }) {
+    const { colWidth, rowHeight, scrollY, scrollX, colorScheme, blockSize, highResScaleFactor, } = model;
+    const theme = useTheme();
+    const contrastScheme = useMemo(() => colorContrast(colorScheme, theme), [colorScheme, theme]);
+    const ref = useRef(null);
+    useEffect(() => {
+        var _a;
+        const ctx = (_a = ref.current) === null || _a === void 0 ? void 0 : _a.getContext('2d');
+        if (!ctx) {
+            return;
+        }
+        return autorun(() => {
+            renderBlock({
+                ctx,
+                offsetX,
+                offsetY,
+                contrastScheme,
+                model,
+            });
+        });
+    }, [model, offsetX, offsetY, contrastScheme]);
+    return (React.createElement("canvas", { ref: ref, onMouseMove: event => {
+            if (!ref.current) {
+                return;
+            }
+            const { left, top } = ref.current.getBoundingClientRect();
+            const mouseX = event.clientX - left + offsetX;
+            const mouseY = event.clientY - top + offsetY;
+            model.setMousePos(Math.floor(mouseX / colWidth) + 1, Math.floor(mouseY / rowHeight));
+        }, onMouseLeave: () => model.setMousePos(), width: blockSize * highResScaleFactor, height: blockSize * highResScaleFactor, style: {
+            position: 'absolute',
+            top: scrollY + offsetY,
+            left: scrollX + offsetX,
+            width: blockSize,
+            height: blockSize,
+        } }));
+});
+export default MSABlock;
+//# sourceMappingURL=MSABlock.js.map

package/dist/components/MSAPanel/MSABlock.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MSABlock.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/MSABlock.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,OAAO,CAAA;AACzD,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAA;AAC9B,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACxC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,SAAS;AACT,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAkB,CAAA;AAE9C,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAA;AAE1C,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,EAClC,KAAK,EACL,OAAO,EACP,OAAO,GAKR;IACC,MAAM,EACJ,QAAQ,EACR,SAAS,EACT,OAAO,EACP,OAAO,EACP,WAAW,EACX,SAAS,EACT,kBAAkB,GACnB,GAAG,KAAK,CAAA;IACT,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IAExB,MAAM,cAAc,GAAG,OAAO,CAC5B,GAAG,EAAE,CAAC,aAAa,CAAC,WAAW,EAAE,KAAK,CAAC,EACvC,CAAC,WAAW,EAAE,KAAK,CAAC,CACrB,CAAA;IAED,MAAM,GAAG,GAAG,MAAM,CAAoB,IAAI,CAAC,CAAA;IAC3C,SAAS,CAAC,GAAG,EAAE;;QACb,MAAM,GAAG,GAAG,MAAA,GAAG,CAAC,OAAO,0CAAE,UAAU,CAAC,IAAI,CAAC,CAAA;QACzC,IAAI,CAAC,GAAG,EAAE,CAAC;YACT,OAAM;QACR,CAAC;QACD,OAAO,OAAO,CAAC,GAAG,EAAE;YAClB,WAAW,CAAC;gBACV,GAAG;gBACH,OAAO;gBACP,OAAO;gBACP,cAAc;gBACd,KAAK;aACN,CAAC,CAAA;QACJ,CAAC,CAAC,CAAA;IACJ,CAAC,EAAE,CAAC,KAAK,EAAE,OAAO,EAAE,OAAO,EAAE,cAAc,CAAC,CAAC,CAAA;IAC7C,OAAO,CACL,gCACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAC;gBACjB,OAAM;YACR,CAAC;YACD,MAAM,EAAE,IAAI,EAAE,GAAG,EAAE,GAAG,GAAG,CAAC,OAAO,CAAC,qBAAqB,EAAE,CAAA;YACzD,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,IAAI,GAAG,OAAO,CAAA;YAC7C,MAAM,MAAM,GAAG,KAAK,CAAC,OAAO,GAAG,GAAG,GAAG,OAAO,CAAA;YAC5C,KAAK,CAAC,WAAW,CACf,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,EACjC,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,SAAS,CAAC,CAC/B,CAAA;QACH,CAAC,EACD,YAAY,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,WAAW,EAAE,EACvC,KAAK,EAAE,SAAS,GAAG,kBAAkB,EACrC,MAAM,EAAE,SAAS,GAAG,kBAAkB,EACtC,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,GAAG,EAAE,OAAO,GAAG,OAAO;YACtB,IAAI,EAAE,OAAO,GAAG,OAAO;YACvB,KAAK,EAAE,SAAS;YAChB,MAAM,EAAE,SAAS;SAClB,GACD,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAA"}

package/dist/components/{MSACanvas.d.ts → MSAPanel/MSACanvas.d.ts}

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../model';
+import { MsaViewModel } from '../../model';
 declare const MSACanvas: ({ model }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/{MSACanvas.js → MSAPanel/MSACanvas.js}

@@ -101,9 +101,16 @@ const MSACanvas = observer(function ({ model }) {
             height,
             width: msaAreaWidth,
             overflow: 'hidden',
-        } }, !MSA && !msaFilehandle ? null : !MSA ? (React.createElement("div", { style: { position: 'absolute', left: '50%', top: '50%' } },
-        React.createElement(CircularProgress, null),
-        React.createElement(Typography, null, "Loading..."))) : (blocks2d.map(([bx, by]) => (React.createElement(MSABlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by }))))));
+        } }, !MSA && !msaFilehandle ? null : !MSA ? (React.createElement(Loading, null)) : (blocks2d.map(([bx, by]) => (React.createElement(MSABlock, { key: `${bx}_${by}`, model: model, offsetX: bx, offsetY: by }))))));
 });
+function Loading() {
+    return (React.createElement("div", { style: {
+            position: 'absolute',
+            left: '50%',
+            top: '50%',
+        } },
+        React.createElement(CircularProgress, null),
+        React.createElement(Typography, null, "Loading...")));
+}
 export default MSACanvas;
 //# sourceMappingURL=MSACanvas.js.map

package/dist/components/MSAPanel/MSACanvas.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"MSACanvas.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/MSACanvas.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,gBAAgB,EAAE,MAAM,eAAe,CAAA;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,cAAc,MAAM,iBAAiB,CAAA;AAI5C,OAAO,QAAQ,MAAM,YAAY,CAAA;AAEjC,MAAM,SAAS,GAAG,QAAQ,CAAC,UAAU,EAAE,KAAK,EAA2B;IACrE,MAAM,EAAE,GAAG,EAAE,aAAa,EAAE,MAAM,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAA;IACpE,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,QAAQ;IACR,MAAM,SAAS,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CAAA;IACxB,iCAAiC;IACjC,MAAM,KAAK,GAAG,MAAM,CAAS,CAAC,CAAC,CAAA;IAC/B,MAAM,KAAK,GAAG,MAAM,CAAS,CAAC,CAAC,CAAA;IAC/B,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzD,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,OAAM;QACR,CAAC;QACD,SAAS,OAAO,CAAC,SAAqB;YACpC,MAAM,KAAK,GAAG,cAAc,CAAC,SAAS,CAAC,CAAA;YACvC,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAC9B,MAAM,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;YAE9B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;gBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;gBACxB,qBAAqB,CAAC,GAAG,EAAE;oBACzB,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,KAAK,CAAC,SAAS,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;oBAChC,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,MAAM,CAAC,OAAO,GAAG,CAAC,CAAA;oBAClB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;gBAC3B,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,SAAS,CAAC,cAAc,EAAE,CAAA;QAC5B,CAAC;QACD,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QACvC,OAAO,GAAG,EAAE;YACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;QAC5C,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,OAAO,GAAG,GAAG,EAAE,GAAE,CAAC,CAAA;QAEtB,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,SAAS,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACvC,MAAM,SAAS,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACvC,IAAI,SAAS,IAAI,SAAS,EAAE,CAAC;gBAC3B,uEAAuE;gBACvE,8EAA8E;gBAC9E,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;oBACvB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;wBAC1B,KAAK,CAAC,SAAS,CAAC,SAAS,CAAC,CAAA;wBAC1B,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;wBAC7B,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;gBACJ,CAAC;YACH,CAAC;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,IAAI,aAAa,EAAE,CAAC;gBAClB,gBAAgB,CAAC,KAAK,CAAC,CAAA;YACzB,CAAC;QACH,CAAC;QAED,IAAI,aAAa,EAAE,CAAC;YAClB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,GAAG,EAAE;gBACb,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;QACH,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,CAAC,CAAC,CAAA;IAE1B,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,KAAK,CAAC,EAAE;YACnB,2DAA2D;YAC3D,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;YAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC;gBAC/C,OAAM;YACR,CAAC;YAED,qCAAqC;YACrC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;gBACvB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC7B,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;gBAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;YACxB,CAAC;QACH,CAAC,EACD,SAAS,EAAE,KAAK,CAAC,EAAE;YACjB,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,gBAAgB,CAAC,KAAK,CAAC,CAAA;QACzB,CAAC,EACD,YAAY,EAAE,KAAK,CAAC,EAAE;YACpB,KAAK,CAAC,cAAc,EAAE,CAAA;QACxB,CAAC,EACD,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM;YACN,KAAK,EAAE,YAAY;YACnB,QAAQ,EAAE,QAAQ;SACnB,IAEA,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CACtC,oBAAC,OAAO,OAAG,CACZ,CAAC,CAAC,CAAC,CACF,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CACzB,oBAAC,QAAQ,IACP,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,EAClB,KAAK,EAAE,KAAK,EACZ,OAAO,EAAE,EAAE,EACX,OAAO,EAAE,EAAE,GACX,CACH,CAAC,CACH,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,OAAO;IACd,OAAO,CACL,6BACE,KAAK,EAAE;YACL,QAAQ,EAAE,UAAU;YACpB,IAAI,EAAE,KAAK;YACX,GAAG,EAAE,KAAK;SACX;QAED,oBAAC,gBAAgB,OAAG;QACpB,oBAAC,UAAU,qBAAwB,CAC/B,CACP,CAAA;AACH,CAAC;AAED,eAAe,SAAS,CAAA"}

package/dist/components/{MSAMouseoverCanvas.d.ts → MSAPanel/MSAMouseoverCanvas.d.ts}

@@ -1,5 +1,5 @@
 import React from 'react';
-import { MsaViewModel } from '../model';
+import { MsaViewModel } from '../../model';
 declare const MSAMouseoverCanvas: ({ model, }: {
     model: MsaViewModel;
 }) => React.JSX.Element;

package/dist/components/MSAPanel/MSAMouseoverCanvas.js

@@ -0,0 +1,50 @@
+import React, { useEffect, useRef } from 'react';
+import { observer } from 'mobx-react';
+import { autorun } from 'mobx';
+function renderMouseover({ ctx, model, }) {
+    const { mouseCol, colWidth, treeAreaWidth, resizeHandleWidth, width, height, rowHeight, scrollX, scrollY, mouseRow, 
+    // @ts-expect-error
+    mouseCol2, minimapHeight, totalTrackAreaHeight, } = model;
+    ctx.resetTransform();
+    ctx.clearRect(0, 0, width, height);
+    if (mouseCol !== undefined) {
+        ctx.fillStyle = 'rgba(0,0,0,0.15)';
+        const x = (mouseCol - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth;
+        ctx.fillRect(x, minimapHeight, colWidth, height);
+    }
+    if (mouseRow !== undefined) {
+        ctx.fillStyle = 'rgba(0,0,0,0.15)';
+        const y = mouseRow * rowHeight + scrollY + minimapHeight + totalTrackAreaHeight;
+        ctx.fillRect(treeAreaWidth + resizeHandleWidth, y, width, rowHeight);
+    }
+    if (mouseCol2 !== undefined) {
+        ctx.fillStyle = 'rgba(255,255,0,0.2)';
+        const x = (mouseCol2 - 1) * colWidth + scrollX + treeAreaWidth + resizeHandleWidth;
+        ctx.fillRect(x, 0, colWidth, height);
+    }
+}
+const MSAMouseoverCanvas = observer(function ({ model, }) {
+    const ref = useRef(null);
+    const { height, width } = model;
+    useEffect(() => {
+        var _a;
+        const ctx = (_a = ref.current) === null || _a === void 0 ? void 0 : _a.getContext('2d');
+        if (!ctx) {
+            return;
+        }
+        return autorun(() => {
+            renderMouseover({ ctx, model });
+        });
+    }, [model]);
+    return (React.createElement("canvas", { ref: ref, width: width, height: height, style: {
+            position: 'absolute',
+            top: 0,
+            left: 0,
+            width,
+            height,
+            zIndex: 1000,
+            pointerEvents: 'none',
+        } }));
+});
+export default MSAMouseoverCanvas;
+//# sourceMappingURL=MSAMouseoverCanvas.js.map

package/dist/components/MSAPanel/MSAMouseoverCanvas.js.map

@@ -0,0 +1 @@
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package/dist/components/MSAPanel/index.d.ts

@@ -0,0 +1,5 @@
+import React from 'react';
+import { MsaViewModel } from '../../model';
+export default function MSAPanel({ model }: {
+    model: MsaViewModel;
+}): React.JSX.Element;

package/dist/components/MSAPanel/index.js

@@ -0,0 +1,9 @@
+import React from 'react';
+import MSACanvas from './MSACanvas';
+import MSAMouseoverCanvas from './MSAMouseoverCanvas';
+export default function MSAPanel({ model }) {
+    return (React.createElement(React.Fragment, null,
+        React.createElement(MSACanvas, { model: model }),
+        React.createElement(MSAMouseoverCanvas, { model: model })));
+}
+//# sourceMappingURL=index.js.map

package/dist/components/MSAPanel/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/components/MSAPanel/index.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,SAAS,MAAM,aAAa,CAAA;AACnC,OAAO,kBAAkB,MAAM,sBAAsB,CAAA;AAGrD,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,EAAE,KAAK,EAA2B;IACjE,OAAO,CACL;QACE,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI;QAC3B,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,GAAI,CACnC,CACJ,CAAA;AACH,CAAC"}

package/dist/components/MSAPanel/renderMSABlock.d.ts

@@ -0,0 +1,8 @@
+import { MsaViewModel } from '../../model';
+export declare function renderBlock({ model, offsetX, offsetY, contrastScheme, ctx, }: {
+    offsetX: number;
+    offsetY: number;
+    model: MsaViewModel;
+    contrastScheme: Record<string, string>;
+    ctx: CanvasRenderingContext2D;
+}): void;