react-msaview 1.3.2 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (245) hide show
  1. package/bundle/index.js +285 -97099
  2. package/dist/StructureModel.d.ts +9 -0
  3. package/dist/StructureModel.js +11 -0
  4. package/dist/StructureModel.js.map +1 -0
  5. package/dist/UniprotTrack.d.ts +27 -0
  6. package/dist/UniprotTrack.js +53 -0
  7. package/dist/UniprotTrack.js.map +1 -0
  8. package/dist/colorSchemes.d.ts +5 -11
  9. package/dist/colorSchemes.js +27 -32
  10. package/dist/colorSchemes.js.map +1 -0
  11. package/dist/components/BoxTrack.d.ts +6 -6
  12. package/dist/components/BoxTrack.js +9 -137
  13. package/dist/components/BoxTrack.js.map +1 -0
  14. package/dist/components/BoxTrackBlock.d.ts +8 -0
  15. package/dist/components/BoxTrackBlock.js +136 -0
  16. package/dist/components/BoxTrackBlock.js.map +1 -0
  17. package/dist/components/Header.d.ts +2 -2
  18. package/dist/components/Header.js +55 -48
  19. package/dist/components/Header.js.map +1 -0
  20. package/dist/components/ImportForm.d.ts +2 -2
  21. package/dist/components/ImportForm.js +59 -71
  22. package/dist/components/ImportForm.js.map +1 -0
  23. package/dist/components/MSABlock.d.ts +8 -0
  24. package/dist/components/MSABlock.js +103 -0
  25. package/dist/components/MSABlock.js.map +1 -0
  26. package/dist/components/MSACanvas.d.ts +2 -2
  27. package/dist/components/MSACanvas.js +32 -133
  28. package/dist/components/MSACanvas.js.map +1 -0
  29. package/dist/components/MSAMouseoverCanvas.d.ts +6 -0
  30. package/dist/components/MSAMouseoverCanvas.js +52 -0
  31. package/dist/components/MSAMouseoverCanvas.js.map +1 -0
  32. package/dist/components/MSAView.d.ts +2 -2
  33. package/dist/components/MSAView.js +17 -62
  34. package/dist/components/MSAView.js.map +1 -0
  35. package/dist/components/MultiAlignmentSelector.d.ts +6 -0
  36. package/dist/components/MultiAlignmentSelector.js +13 -0
  37. package/dist/components/MultiAlignmentSelector.js.map +1 -0
  38. package/dist/components/ResizeHandles.d.ts +5 -5
  39. package/dist/components/ResizeHandles.js +31 -32
  40. package/dist/components/ResizeHandles.js.map +1 -0
  41. package/dist/components/Rubberband.d.ts +3 -2
  42. package/dist/components/Rubberband.js +41 -64
  43. package/dist/components/Rubberband.js.map +1 -0
  44. package/dist/components/Ruler.d.ts +2 -16
  45. package/dist/components/Ruler.js +19 -88
  46. package/dist/components/Ruler.js.map +1 -0
  47. package/dist/components/TextTrack.d.ts +5 -5
  48. package/dist/components/TextTrack.js +23 -24
  49. package/dist/components/TextTrack.js.map +1 -0
  50. package/dist/components/Track.d.ts +5 -5
  51. package/dist/components/Track.js +41 -40
  52. package/dist/components/Track.js.map +1 -0
  53. package/dist/components/TreeBranchMenu.d.ts +14 -0
  54. package/dist/components/TreeBranchMenu.js +26 -0
  55. package/dist/components/TreeBranchMenu.js.map +1 -0
  56. package/dist/components/TreeCanvas.d.ts +2 -2
  57. package/dist/components/TreeCanvas.js +24 -356
  58. package/dist/components/TreeCanvas.js.map +1 -0
  59. package/dist/components/TreeCanvasBlock.d.ts +7 -0
  60. package/dist/components/TreeCanvasBlock.js +252 -0
  61. package/dist/components/TreeCanvasBlock.js.map +1 -0
  62. package/dist/components/TreeMenu.d.ts +12 -0
  63. package/dist/components/TreeMenu.js +56 -0
  64. package/dist/components/TreeMenu.js.map +1 -0
  65. package/dist/components/TreeRuler.d.ts +2 -2
  66. package/dist/components/TreeRuler.js +3 -3
  67. package/dist/components/TreeRuler.js.map +1 -0
  68. package/dist/components/VerticalGuide.d.ts +7 -0
  69. package/dist/components/VerticalGuide.js +30 -0
  70. package/dist/components/VerticalGuide.js.map +1 -0
  71. package/dist/components/ZoomControls.d.ts +6 -0
  72. package/dist/components/ZoomControls.js +58 -0
  73. package/dist/components/ZoomControls.js.map +1 -0
  74. package/dist/components/data/seq2.d.ts +3 -3
  75. package/dist/components/data/seq2.js +33 -3
  76. package/dist/components/data/seq2.js.map +1 -0
  77. package/dist/components/dialogs/AboutDlg.d.ts +4 -0
  78. package/dist/components/dialogs/AboutDlg.js +40 -0
  79. package/dist/components/dialogs/AboutDlg.js.map +1 -0
  80. package/{bundle/components → dist/components/dialogs}/AddTrackDlg.d.ts +3 -3
  81. package/dist/components/dialogs/AddTrackDlg.js +26 -0
  82. package/dist/components/dialogs/AddTrackDlg.js.map +1 -0
  83. package/dist/components/{AnnotationDlg.d.ts → dialogs/AnnotationDlg.d.ts} +3 -3
  84. package/dist/components/dialogs/AnnotationDlg.js +65 -0
  85. package/dist/components/dialogs/AnnotationDlg.js.map +1 -0
  86. package/dist/components/dialogs/DetailsDlg.d.ts +7 -0
  87. package/dist/components/dialogs/DetailsDlg.js +13 -0
  88. package/dist/components/dialogs/DetailsDlg.js.map +1 -0
  89. package/dist/components/dialogs/MoreInfoDlg.d.ts +6 -0
  90. package/dist/components/dialogs/MoreInfoDlg.js +11 -0
  91. package/dist/components/dialogs/MoreInfoDlg.js.map +1 -0
  92. package/dist/components/dialogs/SettingsDlg.d.ts +7 -0
  93. package/dist/components/dialogs/SettingsDlg.js +48 -0
  94. package/dist/components/dialogs/SettingsDlg.js.map +1 -0
  95. package/dist/components/dialogs/TrackInfoDlg.d.ts +9 -0
  96. package/{bundle/components → dist/components/dialogs}/TrackInfoDlg.js +12 -13
  97. package/dist/components/dialogs/TrackInfoDlg.js.map +1 -0
  98. package/dist/components/dialogs/TracklistDlg.d.ts +7 -0
  99. package/dist/components/dialogs/TracklistDlg.js +18 -0
  100. package/dist/components/dialogs/TracklistDlg.js.map +1 -0
  101. package/{bundle/components/Ruler.d.ts → dist/components/util.d.ts} +1 -6
  102. package/dist/components/util.js +68 -0
  103. package/dist/components/util.js.map +1 -0
  104. package/dist/index.d.ts +2 -4
  105. package/dist/index.js +3 -3
  106. package/dist/index.js.map +1 -0
  107. package/dist/layout.js +14 -20
  108. package/dist/layout.js.map +1 -0
  109. package/dist/model.d.ts +114 -97
  110. package/dist/model.js +248 -486
  111. package/dist/model.js.map +1 -0
  112. package/dist/parseNewick.d.ts +1 -5
  113. package/dist/parseNewick.js +11 -8
  114. package/dist/parseNewick.js.map +1 -0
  115. package/dist/parsers/ClustalMSA.d.ts +6 -18
  116. package/dist/parsers/ClustalMSA.js +55 -64
  117. package/dist/parsers/ClustalMSA.js.map +1 -0
  118. package/dist/parsers/FastaMSA.d.ts +5 -12
  119. package/dist/parsers/FastaMSA.js +55 -64
  120. package/dist/parsers/FastaMSA.js.map +1 -0
  121. package/dist/parsers/StockholmMSA.d.ts +10 -17
  122. package/dist/parsers/StockholmMSA.js +81 -110
  123. package/dist/parsers/StockholmMSA.js.map +1 -0
  124. package/dist/util.d.ts +34 -7
  125. package/dist/util.js +76 -24
  126. package/dist/util.js.map +1 -0
  127. package/dist/version.d.ts +1 -0
  128. package/dist/version.js +2 -0
  129. package/dist/version.js.map +1 -0
  130. package/package.json +34 -34
  131. package/src/StructureModel.ts +11 -0
  132. package/src/UniprotTrack.ts +59 -0
  133. package/src/colorSchemes.ts +520 -0
  134. package/src/components/BoxTrack.tsx +33 -0
  135. package/src/components/BoxTrackBlock.tsx +198 -0
  136. package/src/components/Header.tsx +106 -0
  137. package/src/components/ImportForm.tsx +192 -0
  138. package/src/components/MSABlock.tsx +164 -0
  139. package/src/components/MSACanvas.tsx +142 -0
  140. package/src/components/MSAMouseoverCanvas.tsx +87 -0
  141. package/src/components/MSAView.tsx +88 -0
  142. package/src/components/MultiAlignmentSelector.tsx +33 -0
  143. package/src/components/ResizeHandles.tsx +137 -0
  144. package/src/components/Rubberband.tsx +270 -0
  145. package/src/components/Ruler.tsx +123 -0
  146. package/src/components/TextTrack.tsx +120 -0
  147. package/src/components/Track.tsx +153 -0
  148. package/src/components/TreeBranchMenu.tsx +67 -0
  149. package/src/components/TreeCanvas.tsx +128 -0
  150. package/src/components/TreeCanvasBlock.tsx +359 -0
  151. package/src/components/TreeMenu.tsx +105 -0
  152. package/src/components/TreeRuler.tsx +12 -0
  153. package/src/components/VerticalGuide.tsx +50 -0
  154. package/src/components/ZoomControls.tsx +78 -0
  155. package/src/components/data/seq2.ts +35 -0
  156. package/src/components/dialogs/AboutDlg.tsx +58 -0
  157. package/src/components/dialogs/AddTrackDlg.tsx +74 -0
  158. package/src/components/dialogs/AnnotationDlg.tsx +144 -0
  159. package/src/components/dialogs/DetailsDlg.tsx +28 -0
  160. package/src/components/dialogs/MoreInfoDlg.tsx +21 -0
  161. package/src/components/dialogs/SettingsDlg.tsx +154 -0
  162. package/src/components/dialogs/TrackInfoDlg.tsx +59 -0
  163. package/src/components/dialogs/TracklistDlg.tsx +59 -0
  164. package/src/components/util.ts +93 -0
  165. package/src/declare.d.ts +1 -0
  166. package/src/index.ts +2 -0
  167. package/src/layout.ts +83 -0
  168. package/src/model.ts +793 -0
  169. package/{bundle/parseNewick.d.ts → src/parseNewick.ts} +35 -5
  170. package/src/parsers/ClustalMSA.ts +79 -0
  171. package/src/parsers/FastaMSA.ts +82 -0
  172. package/src/parsers/StockholmMSA.ts +137 -0
  173. package/src/util.ts +142 -0
  174. package/src/version.ts +1 -0
  175. package/bundle/colorSchemes.d.ts +0 -16
  176. package/bundle/colorSchemes.js +0 -455
  177. package/bundle/components/AboutDlg.d.ts +0 -5
  178. package/bundle/components/AboutDlg.js +0 -47
  179. package/bundle/components/AddTrackDlg.js +0 -26
  180. package/bundle/components/AnnotationDlg.d.ts +0 -11
  181. package/bundle/components/AnnotationDlg.js +0 -77
  182. package/bundle/components/BoxTrack.d.ts +0 -7
  183. package/bundle/components/BoxTrack.js +0 -143
  184. package/bundle/components/DetailsDlg.d.ts +0 -8
  185. package/bundle/components/DetailsDlg.js +0 -12
  186. package/bundle/components/Header.d.ts +0 -6
  187. package/bundle/components/Header.js +0 -63
  188. package/bundle/components/ImportForm.d.ts +0 -6
  189. package/bundle/components/ImportForm.js +0 -89
  190. package/bundle/components/MSACanvas.d.ts +0 -6
  191. package/bundle/components/MSACanvas.js +0 -210
  192. package/bundle/components/MSAView.d.ts +0 -6
  193. package/bundle/components/MSAView.js +0 -88
  194. package/bundle/components/MoreInfoDlg.d.ts +0 -6
  195. package/bundle/components/MoreInfoDlg.js +0 -11
  196. package/bundle/components/ResizeHandles.d.ts +0 -8
  197. package/bundle/components/ResizeHandles.js +0 -110
  198. package/bundle/components/Rubberband.d.ts +0 -7
  199. package/bundle/components/Rubberband.js +0 -196
  200. package/bundle/components/Ruler.js +0 -121
  201. package/bundle/components/SettingsDlg.d.ts +0 -8
  202. package/bundle/components/SettingsDlg.js +0 -40
  203. package/bundle/components/TextTrack.d.ts +0 -7
  204. package/bundle/components/TextTrack.js +0 -72
  205. package/bundle/components/Track.d.ts +0 -11
  206. package/bundle/components/Track.js +0 -81
  207. package/bundle/components/TrackInfoDlg.d.ts +0 -6
  208. package/bundle/components/TracklistDlg.d.ts +0 -8
  209. package/bundle/components/TracklistDlg.js +0 -18
  210. package/bundle/components/TreeCanvas.d.ts +0 -6
  211. package/bundle/components/TreeCanvas.js +0 -431
  212. package/bundle/components/TreeRuler.d.ts +0 -6
  213. package/bundle/components/TreeRuler.js +0 -8
  214. package/bundle/components/data/seq2.d.ts +0 -3
  215. package/bundle/components/data/seq2.js +0 -3
  216. package/bundle/index.d.ts +0 -4
  217. package/bundle/layout.d.ts +0 -23
  218. package/bundle/layout.js +0 -53
  219. package/bundle/model.d.ts +0 -364
  220. package/bundle/model.js +0 -894
  221. package/bundle/parseNewick.js +0 -94
  222. package/bundle/parsers/ClustalMSA.d.ts +0 -39
  223. package/bundle/parsers/ClustalMSA.js +0 -77
  224. package/bundle/parsers/FastaMSA.d.ts +0 -26
  225. package/bundle/parsers/FastaMSA.js +0 -78
  226. package/bundle/parsers/StockholmMSA.d.ts +0 -75
  227. package/bundle/parsers/StockholmMSA.js +0 -142
  228. package/bundle/util.d.ts +0 -17
  229. package/bundle/util.js +0 -33
  230. package/dist/components/AboutDlg.d.ts +0 -5
  231. package/dist/components/AboutDlg.js +0 -50
  232. package/dist/components/AddTrackDlg.d.ts +0 -8
  233. package/dist/components/AddTrackDlg.js +0 -26
  234. package/dist/components/AnnotationDlg.js +0 -77
  235. package/dist/components/DetailsDlg.d.ts +0 -8
  236. package/dist/components/DetailsDlg.js +0 -12
  237. package/dist/components/MoreInfoDlg.d.ts +0 -6
  238. package/dist/components/MoreInfoDlg.js +0 -11
  239. package/dist/components/SettingsDlg.d.ts +0 -8
  240. package/dist/components/SettingsDlg.js +0 -40
  241. package/dist/components/TrackInfoDlg.d.ts +0 -6
  242. package/dist/components/TrackInfoDlg.js +0 -33
  243. package/dist/components/TracklistDlg.d.ts +0 -8
  244. package/dist/components/TracklistDlg.js +0 -18
  245. package/dist/components/package.json +0 -62

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