react-msaview 1.2.11 → 1.3.0

package/dist/components/ImportForm.js

@@ -48,6 +48,7 @@ export default observer(function (_a) {
                     React.createElement(ListItem, { model: model, onClick: function () {
                             model.setTreeFilehandle({
                                 uri: 'https://jbrowse.org/genomes/newick_trees/sarscov2phylo.pub.ft.nh',
+                                locationType: 'UriLocation',
                             });
                         } }, "230k COVID-19 samples (tree only)"),
                     React.createElement(ListItem, { model: model, onClick: function () {
@@ -59,30 +60,36 @@ export default observer(function (_a) {
                     React.createElement(ListItem, { model: model, onClick: function () {
                             model.setMSAFilehandle({
                                 uri: 'https://ihh.github.io/abrowse/build/pfam-cov2.stock',
+                                locationType: 'UriLocation',
                             });
                         } }, "PFAM SARS-CoV2 multi-stockholm"),
                     React.createElement(ListItem, { model: model, onClick: function () {
                             model.setMSAFilehandle({
                                 uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/Lysine.stock',
+                                locationType: 'UriLocation',
                             });
                         } }, "Lysine stockholm file"),
                     React.createElement(ListItem, { model: model, onClick: function () {
                             model.setMSAFilehandle({
                                 uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/PF01601_full.txt',
+                                locationType: 'UriLocation',
                             });
                         } }, "PF01601 stockholm file (SARS-CoV2 spike protein)"),
                     React.createElement(ListItem, { model: model, onClick: function () {
                             model.setMSAFilehandle({
                                 uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/europe_covid.fa',
+                                locationType: 'UriLocation',
                             });
                         } }, "Europe COVID full genomes (LR883044.1 and 199 other sequences)"),
                     React.createElement(ListItem, { model: model, onClick: function () {
                             transaction(function () {
                                 model.setMSAFilehandle({
                                     uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.fa',
+                                    locationType: 'UriLocation',
                                 });
                                 model.setTreeFilehandle({
                                     uri: 'https://jbrowse.org/genomes/multiple_sequence_alignments/rhv_test-only.aligned_with_mafft_auto.nh',
+                                    locationType: 'UriLocation',
                                 });
                             });
                         } }, "MAFFT+VeryFastTree(17.9k samples)"))))));

package/dist/components/package.json

@@ -1,10 +1,11 @@
 {
-    "version": "1.2.10",
+    "version": "1.2.11",
     "license": "MIT",
     "main": "dist/index.js",
     "typings": "dist/index.d.ts",
     "files": [
-        "dist"
+        "dist",
+        "bundle"
     ],
     "engines": {
         "node": ">=10"
@@ -15,14 +16,12 @@
         "prestart": "npm run clean",
         "prebuild": "npm run clean",
         "start": "yarn tsc --watch",
-        "build": "yarn tsc",
-        "size": "size-limit",
-        "analyze": "size-limit --why",
+        "build": "yarn tsc && rollup -c",
         "preversion": "npm run build",
         "postversion": "git push --follow-tags"
     },
     "peerDependencies": {
-        "@jbrowse/core": ">=1.3.0",
+        "@jbrowse/core": ">=1.5.1",
         "@material-ui/core": ">=4.12.2",
         "react": ">=16.8.0",
         "react-dom": ">=16.8.0"
@@ -30,6 +29,10 @@
     "name": "react-msaview",
     "author": "Colin",
     "devDependencies": {
+        "@rollup/plugin-commonjs": "^21.0.1",
+        "@rollup/plugin-json": "^4.1.0",
+        "@rollup/plugin-node-resolve": "^13.0.6",
+        "@rollup/plugin-typescript": "^8.3.0",
         "@types/color": "^3.0.1",
         "@types/d3": "^6.7.0",
         "@types/lodash": "^4.14.170",
@@ -39,6 +42,10 @@
         "eslint-config-react-app": "^6.0.0",
         "react": "^17.0.1",
         "react-dom": "^17.0.1",
+        "rollup": "^2.60.2",
+        "rollup-plugin-node-builtins": "^2.1.2",
+        "rollup-plugin-node-polyfills": "^0.2.1",
+        "rollup-plugin-polyfill-node": "^0.7.0",
         "tslib": "^2.1.0",
         "typescript": "^4.2.3"
     },

package/dist/model.d.ts

@@ -74,54 +74,102 @@ declare const model: import("mobx-state-tree").ISnapshotProcessor<import("mobx-s
     drawNodeBubbles: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     highResScaleFactor: import("mobx-state-tree").IType<number | undefined, number, number>;
     colorSchemeName: import("mobx-state-tree").IType<string | undefined, string, string>;
-    treeFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    treeFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
         uri: import("mobx-state-tree").ISimpleType<string>;
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>>, {
+        locationType: "UriLocation";
         uri: string;
+        internetAccountId: string | undefined;
+        internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }> | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
         uri: import("mobx-state-tree").ISimpleType<string>;
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }> | import("mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
-    }>>>;
-    msaFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    }>>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    msaFilehandle: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISnapshotProcessor<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
         uri: import("mobx-state-tree").ISimpleType<string>;
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }>> | import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>>, {
+        locationType: "UriLocation";
         uri: string;
+        internetAccountId: string | undefined;
+        internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }> | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }>, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"UriLocation">;
         uri: import("mobx-state-tree").ISimpleType<string>;
         baseUri: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        internetAccountPreAuthorization: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }>> | import("mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }> | import("mobx-state-tree").ModelInstanceTypeProps<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
-    }>>>;
+    }>>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     currentAlignment: import("mobx-state-tree").IType<number | undefined, number, number>;
     collapsed: import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>;
     showOnly: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -323,18 +371,34 @@ declare const model: import("mobx-state-tree").ISnapshotProcessor<import("mobx-s
     highResScaleFactor: number;
     colorSchemeName: string;
     treeFilehandle: {
+        locationType: "UriLocation";
         uri: string;
+        internetAccountId: string | undefined;
+        internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }> | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }> | undefined;
     msaFilehandle: {
+        locationType: "UriLocation";
         uri: string;
+        internetAccountId: string | undefined;
+        internetAccountPreAuthorization: import("mobx-state-tree").ModelSnapshotType<{
+            internetAccountType: import("mobx-state-tree").ISimpleType<string>;
+            authInfo: import("mobx-state-tree").IType<any, any, any>;
+        }> | undefined;
     } | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"LocalPathLocation">;
         localPath: import("mobx-state-tree").ISimpleType<string>;
     }> | import("mobx-state-tree").ModelSnapshotType<{
+        locationType: import("mobx-state-tree").ISimpleType<"BlobLocation">;
         name: import("mobx-state-tree").ISimpleType<string>;
         blobId: import("mobx-state-tree").ISimpleType<string>;
     }> | undefined;

package/package.json

@@ -1,10 +1,11 @@
 {
-  "version": "1.2.11",
+  "version": "1.3.0",
   "license": "MIT",
   "main": "dist/index.js",
   "typings": "dist/index.d.ts",
   "files": [
-    "dist"
+    "dist",
+    "bundle"
   ],
   "engines": {
     "node": ">=10"
@@ -15,14 +16,12 @@
     "prestart": "npm run clean",
     "prebuild": "npm run clean",
     "start": "yarn tsc --watch",
-    "build": "yarn tsc",
-    "size": "size-limit",
-    "analyze": "size-limit --why",
+    "build": "yarn tsc && rollup -c",
     "preversion": "npm run build",
     "postversion": "git push --follow-tags"
   },
   "peerDependencies": {
-    "@jbrowse/core": ">=1.3.0",
+    "@jbrowse/core": ">=1.5.1",
     "@material-ui/core": ">=4.12.2",
     "react": ">=16.8.0",
     "react-dom": ">=16.8.0"
@@ -30,6 +29,10 @@
   "name": "react-msaview",
   "author": "Colin",
   "devDependencies": {
+    "@rollup/plugin-commonjs": "^21.0.1",
+    "@rollup/plugin-json": "^4.1.0",
+    "@rollup/plugin-node-resolve": "^13.0.6",
+    "@rollup/plugin-typescript": "^8.3.0",
     "@types/color": "^3.0.1",
     "@types/d3": "^6.7.0",
     "@types/lodash": "^4.14.170",
@@ -39,6 +42,10 @@
     "eslint-config-react-app": "^6.0.0",
     "react": "^17.0.1",
     "react-dom": "^17.0.1",
+    "rollup": "^2.60.2",
+    "rollup-plugin-node-builtins": "^2.1.2",
+    "rollup-plugin-node-polyfills": "^0.2.1",
+    "rollup-plugin-polyfill-node": "^0.7.0",
     "tslib": "^2.1.0",
     "typescript": "^4.2.3"
   },