react-cheminfo 0.55.1 → 0.56.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (26) hide show
  1. package/bin/check-deploy.mjs +7 -1
  2. package/lib/credits/core/credits.d.ts +18 -0
  3. package/lib/credits/core/credits.d.ts.map +1 -1
  4. package/lib/credits/core/credits.js +21 -0
  5. package/lib/credits/core/credits.js.map +1 -1
  6. package/lib/deploy/core/checkDeploy.d.ts.map +1 -1
  7. package/lib/deploy/core/checkDeploy.js +4 -1
  8. package/lib/deploy/core/checkDeploy.js.map +1 -1
  9. package/lib/deploy/core/types.d.ts +7 -0
  10. package/lib/deploy/core/types.d.ts.map +1 -1
  11. package/lib/deploy/core/types.js.map +1 -1
  12. package/lib/ecosystem/core/types.d.ts +1 -1
  13. package/lib/ecosystem/core/types.d.ts.map +1 -1
  14. package/lib/ecosystem/core/unlistedSites.d.ts.map +1 -1
  15. package/lib/ecosystem/core/unlistedSites.js +16 -0
  16. package/lib/ecosystem/core/unlistedSites.js.map +1 -1
  17. package/lib/ecosystem/ui/glyphs.d.ts.map +1 -1
  18. package/lib/ecosystem/ui/glyphs.js +4 -0
  19. package/lib/ecosystem/ui/glyphs.js.map +1 -1
  20. package/package.json +1 -1
  21. package/src/credits/core/credits.ts +23 -0
  22. package/src/deploy/core/checkDeploy.ts +4 -1
  23. package/src/deploy/core/types.ts +7 -0
  24. package/src/ecosystem/core/types.ts +2 -1
  25. package/src/ecosystem/core/unlistedSites.ts +16 -0
  26. package/src/ecosystem/ui/glyphs.tsx +16 -0
package/bin/check-deploy.mjs CHANGED
@@ -13,11 +13,13 @@
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  * "check-deploy": "cheminfo-check-deploy"
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  *
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  * Usage: check-deploy.mjs [--image-name=ghcr.io/owner/repo] [--compose=a,b]
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- * [--foreign=prefix,prefix] [--no-healthcheck] [--quiet]
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+ * [--foreign=prefix,prefix] [--no-healthcheck]
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+ * [--no-published-image] [--quiet]
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  * --image-name the package this repo publishes; read from `git remote` when omitted
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  * --compose the compose files it ships, when not the three every site ships
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  * --foreign image prefixes built elsewhere, exempt from the tag rule
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  * --no-healthcheck the services are not expected to declare a healthcheck
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+ * --no-published-image the image is built on the deploy host on purpose
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  * --quiet say nothing when the scan is clean
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  *
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  * Exits 1 when anything is reported, 2 when it was called wrongly, 0 otherwise.
@@ -42,6 +44,7 @@ let imageName;
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  let composeFiles;
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  let foreignImages;
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  let requireHealthcheck = true;
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+ let requirePublishedImage = true;
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  let quiet = false;
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  for (const argument of process.argv.slice(2)) {
@@ -53,6 +56,8 @@ for (const argument of process.argv.slice(2)) {
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  foreignImages = listOption(argument.slice('--foreign='.length));
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  } else if (argument === '--no-healthcheck') {
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  requireHealthcheck = false;
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+ } else if (argument === '--no-published-image') {
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+ requirePublishedImage = false;
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  } else if (argument === '--quiet') {
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  quiet = true;
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  } else {
@@ -93,6 +98,7 @@ const problems = findDeployProblems(files, {
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  composeFiles: expected,
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  foreignImages: foreignImages ?? ['cloudflare/cloudflared'],
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  requireHealthcheck,
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+ requirePublishedImage,
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  });
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  if (problems.length > 0) {
package/lib/credits/core/credits.d.ts CHANGED
@@ -55,6 +55,12 @@ export declare const CREDITS: readonly [{
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  readonly href: "https://github.com/cheminfo/openchemlib-utils";
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  readonly description: "the structure helpers built on top of OpenChemLib.";
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  readonly license: "MIT";
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+ }, {
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+ readonly id: "openchemlib-sqlite";
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+ readonly name: "openchemlib-sqlite";
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+ readonly href: "https://github.com/cheminfo/openchemlib-sqlite";
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+ readonly description: "the substructure and similarity search, inside SQLite.";
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+ readonly license: "MIT";
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  }, {
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  readonly id: "osiris-property-explorer";
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  readonly name: "OSIRIS Property Explorer";
@@ -233,6 +239,18 @@ export declare const CREDITS: readonly [{
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  readonly name: "ChemExper";
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  readonly href: "https://www.chemexper.com/";
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  readonly description: "the catalogue the compounds and their spectra come from.";
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+ }, {
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+ readonly id: "wikipedia";
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+ readonly name: "Wikipedia";
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+ readonly href: "https://en.wikipedia.org/";
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+ readonly description: "the articles, and the Chembox and Drugbox infoboxes every value is read from.";
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+ readonly license: "CC-BY-SA-4.0";
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+ }, {
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+ readonly id: "wtf-wikipedia";
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+ readonly name: "wtf_wikipedia";
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+ readonly href: "https://github.com/spencermountain/wtf_wikipedia";
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+ readonly description: "reads the wikitext of an article and its templates into plain values.";
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+ readonly license: "MIT";
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  }, {
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  readonly id: "react";
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  readonly name: "React";
package/lib/credits/core/credits.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"credits.d.ts","sourceRoot":"","sources":["../../../src/credits/core/credits.ts"],"names":[],"mappings":"AAAA,wCAAwC;AACxC,MAAM,WAAW,WAAW;IAC1B,iDAAiD;IACjD,EAAE,EAAE,MAAM,CAAC;IACX,qEAAqE;IACrE,IAAI,EAAE,MAAM,CAAC;IACb,4BAA4B;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,8CAA8C;IAC9C,WAAW,EAAE,MAAM,CAAC;IACpB;;;OAGG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,qCAAqC;AACrC,MAAM,MAAM,QAAQ,GAAG,CAAC,OAAO,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC;AAEtD;;;;;;;;;GASG;AACH,wBAAgB,OAAO,CAAC,GAAG,EAAE,SAAS,QAAQ,EAAE,GAAG,WAAW,EAAE,CAU/D;AAED;;;;GAIG;AACH,wBAAgB,QAAQ,CAAC,EAAE,EAAE,MAAM,GAAG,WAAW,GAAG,SAAS,CAE5D;AAED;;;GAGG;AACH,eAAO,MAAM,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAqRuB,CAAC"}
package/lib/credits/core/credits.js CHANGED
@@ -53,6 +53,13 @@ export const CREDITS = [
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  description: 'the structure helpers built on top of OpenChemLib.',
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  license: 'MIT',
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  },
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+ {
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+ id: 'openchemlib-sqlite',
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+ name: 'openchemlib-sqlite',
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+ href: 'https://github.com/cheminfo/openchemlib-sqlite',
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+ description: 'the substructure and similarity search, inside SQLite.',
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+ license: 'MIT',
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+ },
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  {
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  id: 'osiris-property-explorer',
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  name: 'OSIRIS Property Explorer',
@@ -261,6 +268,20 @@ export const CREDITS = [
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  href: 'https://www.chemexper.com/',
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  description: 'the catalogue the compounds and their spectra come from.',
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  },
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+ {
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+ id: 'wikipedia',
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+ name: 'Wikipedia',
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+ href: 'https://en.wikipedia.org/',
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+ description: 'the articles, and the Chembox and Drugbox infoboxes every value is read from.',
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+ license: 'CC-BY-SA-4.0',
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+ },
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+ {
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+ id: 'wtf-wikipedia',
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+ name: 'wtf_wikipedia',
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+ href: 'https://github.com/spencermountain/wtf_wikipedia',
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+ description: 'reads the wikitext of an article and its templates into plain values.',
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+ license: 'MIT',
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+ },
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  {
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  id: 'react',
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  name: 'React',
package/lib/credits/core/credits.js.map CHANGED
@@ -1 +1 @@
1
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1
+ 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package/lib/deploy/core/checkDeploy.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"checkDeploy.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/checkDeploy.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,kBAAkB,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAGhF;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,kBAAkB,CAChC,KAAK,EAAE,SAAS,UAAU,EAAE,EAC5B,OAAO,GAAE,kBAAuB,GAC/B,aAAa,EAAE,CA0EjB"}
1
+ {"version":3,"file":"checkDeploy.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/checkDeploy.ts"],"names":[],"mappings":"AAUA,OAAO,KAAK,EAAE,kBAAkB,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAGhF;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,kBAAkB,CAChC,KAAK,EAAE,SAAS,UAAU,EAAE,EAC5B,OAAO,GAAE,kBAAuB,GAC/B,aAAa,EAAE,CA6EjB"}
package/lib/deploy/core/checkDeploy.js CHANGED
@@ -75,7 +75,10 @@ export function findDeployProblems(files, options = {}) {
75
75
  }
76
76
  readBuildGate(byPath.get('package.json'), dockerfile, problems);
77
77
  readReactCopies(byPath.get('package.json'), byPath.get('package-lock.json'), problems);
78
- readPublishedImage(byPath.get(DOCKER_IMAGE_WORKFLOW), problems);
78
+ const workflow = byPath.get(DOCKER_IMAGE_WORKFLOW);
79
+ if (workflow !== undefined || (options.requirePublishedImage ?? true)) {
80
+ readPublishedImage(workflow, problems);
81
+ }
79
82
  const gitignore = byPath.get('.gitignore');
80
83
  if (gitignore === undefined || !/^\s*\/?\.deploy\/?\s*$/m.test(gitignore)) {
81
84
  problems.push({
package/lib/deploy/core/checkDeploy.js.map CHANGED
@@ -1 +1 @@
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1
+ {"version":3,"file":"checkDeploy.js","sourceRoot":"","sources":["../../../src/deploy/core/checkDeploy.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,GACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AAEnD,OAAO,EAAE,oBAAoB,EAAE,MAAM,YAAY,CAAC;AAElD;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,MAAM,UAAU,kBAAkB,CAChC,KAA4B,EAC5B,UAA8B,EAAE;IAEhC,MAAM,QAAQ,GAAG,OAAO,CAAC,YAAY,IAAI,oBAAoB,CAAC;IAC9D,MAAM,KAAK,GAAG;QACZ,SAAS,EAAE,OAAO,CAAC,SAAS;QAC5B,aAAa,EAAE,OAAO,CAAC,aAAa,IAAI,EAAE;QAC1C,kBAAkB,EAAE,OAAO,CAAC,kBAAkB,IAAI,IAAI;QACtD,iBAAiB,EAAE,CACjB,OAAO,CAAC,iBAAiB,IAAI,gBAAgB,CAC9C,CAAC,WAAW,EAAE;QACf,SAAS,EAAE,CAAC,OAAO,CAAC,SAAS,IAAI,QAAQ,CAAC,CAAC,WAAW,EAAE;KACzD,CAAC;IAEF,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAC;IACzC,KAAK,MAAM,IAAI,IAAI,KAAK;QAAE,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IAE3D,MAAM,QAAQ,GAAoB,EAAE,CAAC;IAErC,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE,CAAC;QAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAC9B,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;YACvB,QAAQ,CAAC,IAAI,CAAC;gBACZ,IAAI,EAAE,IAAI;gBACV,IAAI,EAAE,CAAC;gBACP,IAAI,EAAE,iBAAiB;gBACvB,OAAO,EAAE,8CAA8C;gBACvD,IAAI,EAAE,UAAU,IAAI,yBAAyB;aAC9C,CAAC,CAAC;QACL,CAAC;aAAM,CAAC;YACN,eAAe,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,CAAC,CAAC;QAC/C,CAAC;IACH,CAAC;IAED,MAAM,UAAU,GAAG,MAAM,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IAC9C,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;QAC7B,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,cAAc;YACpB,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EAAE,8CAA8C;YACvD,IAAI,EAAE,kFAAkF;SACzF,CAAC,CAAC;IACL,CAAC;SAAM,CAAC;QACN,cAAc,CAAC,UAAU,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;IACjD,CAAC;IAED,MAAM,UAAU,GAAG,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC5C,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;QAC7B,aAAa,CAAC,UAAU,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAC;QAC5C,kBAAkB,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IAC3C,CAAC;IAED,aAAa,CAAC,MAAM,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAC;IAEhE,eAAe,CACb,MAAM,CAAC,GAAG,CAAC,cAAc,CAAC,EAC1B,MAAM,CAAC,GAAG,CAAC,mBAAmB,CAAC,EAC/B,QAAQ,CACT,CAAC;IAEF,MAAM,QAAQ,GAAG,MAAM,CAAC,GAAG,CAAC,qBAAqB,CAAC,CAAC;IACnD,IAAI,QAAQ,KAAK,SAAS,IAAI,CAAC,OAAO,CAAC,qBAAqB,IAAI,IAAI,CAAC,EAAE,CAAC;QACtE,kBAAkB,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;IACzC,CAAC;IAED,MAAM,SAAS,GAAG,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC3C,IAAI,SAAS,KAAK,SAAS,IAAI,CAAC,yBAAyB,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC;QAC1E,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,uBAAuB;YAC7B,OAAO,EACL,8EAA8E;YAChF,IAAI,EAAE,kCAAkC;SACzC,CAAC,CAAC;IACL,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC"}
package/lib/deploy/core/types.d.ts CHANGED
@@ -47,6 +47,13 @@ export interface CheckDeployOptions {
47
47
  * @default true
48
48
  */
49
49
  requireHealthcheck?: boolean;
50
+ /**
51
+ * Whether a workflow must publish the image. A private repository with no
52
+ * CI minutes builds it on the deploy host on purpose; a workflow it does
53
+ * ship is still checked.
54
+ * @default true
55
+ */
56
+ requirePublishedImage?: boolean;
50
57
  /**
51
58
  * A comment carrying this marker inside a service waives the healthcheck for
52
59
  * it, for a worker with no HTTP surface to probe. The reason is written next
package/lib/deploy/core/types.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
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package/lib/deploy/core/types.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/deploy/core/types.ts"],"names":[],"mappings":"AAyFA;;;GAGG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAsB;IACrD,cAAc;IACd,sBAAsB;IACtB,0BAA0B;CAC3B,CAAC"}
1
+ {"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/deploy/core/types.ts"],"names":[],"mappings":"AAgGA;;;GAGG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAsB;IACrD,cAAc;IACd,sBAAsB;IACtB,0BAA0B;CAC3B,CAAC"}
package/lib/ecosystem/core/types.d.ts CHANGED
@@ -1,6 +1,6 @@
1
1
  import type { SiteGroupId } from './groups.ts';
2
2
  /** The sites of the family, whether the menu links to them yet or not. */
3
- export type SiteId = 'learn' | 'inchi' | 'vcl' | 'smiles' | 'iupac-name' | 'openbabel' | 'chemcalc' | 'dbe' | 'nmrium' | 'metabo' | 'derepflow' | 'surge' | 'tex' | 'lcao' | 'regexp' | 'pdb' | 'elucidation' | 'equilibrium' | 'polycarp' | '3d' | 'periodic-table' | 'database' | 'molecules' | 'symmetry' | 'osiris' | 'atoms' | 'moles' | 'inorganic' | 'powerpoint' | 'naturals';
3
+ export type SiteId = 'learn' | 'inchi' | 'vcl' | 'smiles' | 'iupac-name' | 'openbabel' | 'chemcalc' | 'dbe' | 'nmrium' | 'metabo' | 'derepflow' | 'surge' | 'tex' | 'lcao' | 'regexp' | 'pdb' | 'elucidation' | 'equilibrium' | 'polycarp' | '3d' | 'periodic-table' | 'database' | 'molecules' | 'symmetry' | 'osiris' | 'atoms' | 'moles' | 'inorganic' | 'powerpoint' | 'naturals' | 'wikidata';
4
4
  /** A site's name, split the way its own wordmark splits it. */
5
5
  export interface SiteName {
6
6
  /**
package/lib/ecosystem/core/types.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
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package/lib/ecosystem/core/unlistedSites.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"unlistedSites.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/unlistedSites.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAEhD;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,aAAa,EA2BlD,CAAC"}
1
+ {"version":3,"file":"unlistedSites.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/unlistedSites.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAEhD;;;;;GAKG;AACH,eAAO,MAAM,cAAc,EAAE,SAAS,aAAa,EA2ClD,CAAC"}
package/lib/ecosystem/core/unlistedSites.js CHANGED
@@ -31,5 +31,21 @@ export const UNLISTED_SITES = [
31
31
  // apart from the white ring at 16 px.
32
32
  mark: { plate: '#c2410c', accent: '#a3e635' },
33
33
  },
34
+ {
35
+ id: 'wikidata',
36
+ name: { lead: 'wikidata', alt: 'cheminfo', dot: true },
37
+ host: 'wikidata.cheminfo.org',
38
+ tagline: 'The chemistry of Wikipedia’s infoboxes, searchable by structure.',
39
+ group: 'research',
40
+ // A leather-binding brown, the bound encyclopedia, 7.3 Oklab units from the
41
+ // nearest lead of the family (database) and 9.4:1 on white.
42
+ brand: '#5c4033',
43
+ // Wikipedia's own link blue answers it, 5.4:1 on white, so it is also the
44
+ // text half of the wordmark.
45
+ brandAlt: '#3366cc',
46
+ // On the brown plate that blue sits 24.5 apart, under the family's floor,
47
+ // so the link row of the mark takes a lighter blue of the same hue.
48
+ mark: { plate: '#5c4033', accent: '#6b9bf2' },
49
+ },
34
50
  ];
35
51
  //# sourceMappingURL=unlistedSites.js.map
package/lib/ecosystem/core/unlistedSites.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"unlistedSites.js","sourceRoot":"","sources":["../../../src/ecosystem/core/unlistedSites.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,MAAM,CAAC,MAAM,cAAc,GAA6B;IACtD;QACE,EAAE,EAAE,WAAW;QACf,IAAI,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,GAAG,EAAE,UAAU,EAAE,GAAG,EAAE,IAAI,EAAE;QACvD,IAAI,EAAE,wBAAwB;QAC9B,OAAO,EAAE,8DAA8D;QACvE,KAAK,EAAE,UAAU;QACjB,KAAK,EAAE,SAAS;QAChB,QAAQ,EAAE,SAAS;QACnB,IAAI,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE;KAC9C;IACD;QACE,EAAE,EAAE,UAAU;QACd,IAAI,EAAE,EAAE,IAAI,EAAE,UAAU,EAAE,GAAG,EAAE,UAAU,EAAE,GAAG,EAAE,IAAI,EAAE;QACtD,IAAI,EAAE,uBAAuB;QAC7B,OAAO,EAAE,yDAAyD;QAClE,KAAK,EAAE,UAAU;QACjB,qEAAqE;QACrE,mDAAmD;QACnD,KAAK,EAAE,SAAS;QAChB,2EAA2E;QAC3E,YAAY;QACZ,QAAQ,EAAE,SAAS;QACnB,0EAA0E;QAC1E,sCAAsC;QACtC,IAAI,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE;KAC9C;CACF,CAAC"}
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+ {"version":3,"file":"unlistedSites.js","sourceRoot":"","sources":["../../../src/ecosystem/core/unlistedSites.ts"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH,MAAM,CAAC,MAAM,cAAc,GAA6B;IACtD;QACE,EAAE,EAAE,WAAW;QACf,IAAI,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,GAAG,EAAE,UAAU,EAAE,GAAG,EAAE,IAAI,EAAE;QACvD,IAAI,EAAE,wBAAwB;QAC9B,OAAO,EAAE,8DAA8D;QACvE,KAAK,EAAE,UAAU;QACjB,KAAK,EAAE,SAAS;QAChB,QAAQ,EAAE,SAAS;QACnB,IAAI,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE;KAC9C;IACD;QACE,EAAE,EAAE,UAAU;QACd,IAAI,EAAE,EAAE,IAAI,EAAE,UAAU,EAAE,GAAG,EAAE,UAAU,EAAE,GAAG,EAAE,IAAI,EAAE;QACtD,IAAI,EAAE,uBAAuB;QAC7B,OAAO,EAAE,yDAAyD;QAClE,KAAK,EAAE,UAAU;QACjB,qEAAqE;QACrE,mDAAmD;QACnD,KAAK,EAAE,SAAS;QAChB,2EAA2E;QAC3E,YAAY;QACZ,QAAQ,EAAE,SAAS;QACnB,0EAA0E;QAC1E,sCAAsC;QACtC,IAAI,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE;KAC9C;IACD;QACE,EAAE,EAAE,UAAU;QACd,IAAI,EAAE,EAAE,IAAI,EAAE,UAAU,EAAE,GAAG,EAAE,UAAU,EAAE,GAAG,EAAE,IAAI,EAAE;QACtD,IAAI,EAAE,uBAAuB;QAC7B,OAAO,EAAE,kEAAkE;QAC3E,KAAK,EAAE,UAAU;QACjB,4EAA4E;QAC5E,4DAA4D;QAC5D,KAAK,EAAE,SAAS;QAChB,0EAA0E;QAC1E,6BAA6B;QAC7B,QAAQ,EAAE,SAAS;QACnB,0EAA0E;QAC1E,oEAAoE;QACpE,IAAI,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,SAAS,EAAE;KAC9C;CACF,CAAC"}
package/lib/ecosystem/ui/glyphs.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"glyphs.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/ui/glyphs.tsx"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAE/C,4DAA4D;AAC5D,eAAO,MAAM,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,SAAS,CAmgB7D,CAAC"}
1
+ {"version":3,"file":"glyphs.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/ui/glyphs.tsx"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAE/C,4DAA4D;AAC5D,eAAO,MAAM,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,SAAS,CAmhB7D,CAAC"}
package/lib/ecosystem/ui/glyphs.js CHANGED
@@ -92,5 +92,9 @@ export const GLYPHS = {
92
92
  // product, and the organism it came from. The leaf carries the answering
93
93
  // colour.
94
94
  naturals: (alt) => (_jsxs(_Fragment, { children: [_jsx("path", { d: "M11.5 14 16.7 17 16.7 23 11.5 26 6.3 23 6.3 17Z", fill: "none", stroke: "#ffffff", strokeWidth: "2.2", strokeLinejoin: "round" }), _jsx("path", { d: "M16.7 17 19.6 14.2", stroke: "#ffffff", strokeWidth: "2.2", strokeLinecap: "round" }), _jsx("path", { d: "M19 14.8C18.2 9.6 21.6 5.9 27.2 5.2 27.7 10.9 24.5 14.6 19 14.8Z", fill: alt })] })),
95
+ // An infobox: the structure at its top, a ring, and two rows of data under
96
+ // it. The second row carries the answering colour, the blue of a link. Both
97
+ // rows and the gap between them fall on whole pixels at 16 px.
98
+ wikidata: (alt) => (_jsxs(_Fragment, { children: [_jsx("path", { d: "M16 5.4 20.85 8.2 20.85 13.8 16 16.6 11.15 13.8 11.15 8.2Z", fill: "none", stroke: "#ffffff", strokeWidth: "2.2", strokeLinejoin: "round" }), _jsx("rect", { x: "6", y: "20", width: "20", height: "2", rx: "1", fill: "#ffffff" }), _jsx("rect", { x: "6", y: "24", width: "14", height: "4", rx: "2", fill: alt })] })),
95
99
  };
96
100
  //# sourceMappingURL=glyphs.js.map
package/lib/ecosystem/ui/glyphs.js.map CHANGED
@@ -1 +1 @@
1
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "react-cheminfo",
3
- "version": "0.55.1",
3
+ "version": "0.56.0",
4
4
  "license": "MIT",
5
5
  "description": "React components, hooks and framework-free helpers shared by the cheminfo sites: site chrome, citations, sharing, routing, pedagogy, charts, and the structure, orbital and 3D molecule viewers",
6
6
  "author": "Luc Patiny",
package/src/credits/core/credits.ts CHANGED
@@ -77,6 +77,13 @@ export const CREDITS = [
77
77
  description: 'the structure helpers built on top of OpenChemLib.',
78
78
  license: 'MIT',
79
79
  },
80
+ {
81
+ id: 'openchemlib-sqlite',
82
+ name: 'openchemlib-sqlite',
83
+ href: 'https://github.com/cheminfo/openchemlib-sqlite',
84
+ description: 'the substructure and similarity search, inside SQLite.',
85
+ license: 'MIT',
86
+ },
80
87
  {
81
88
  id: 'osiris-property-explorer',
82
89
  name: 'OSIRIS Property Explorer',
@@ -293,6 +300,22 @@ export const CREDITS = [
293
300
  href: 'https://www.chemexper.com/',
294
301
  description: 'the catalogue the compounds and their spectra come from.',
295
302
  },
303
+ {
304
+ id: 'wikipedia',
305
+ name: 'Wikipedia',
306
+ href: 'https://en.wikipedia.org/',
307
+ description:
308
+ 'the articles, and the Chembox and Drugbox infoboxes every value is read from.',
309
+ license: 'CC-BY-SA-4.0',
310
+ },
311
+ {
312
+ id: 'wtf-wikipedia',
313
+ name: 'wtf_wikipedia',
314
+ href: 'https://github.com/spencermountain/wtf_wikipedia',
315
+ description:
316
+ 'reads the wikitext of an article and its templates into plain values.',
317
+ license: 'MIT',
318
+ },
296
319
  {
297
320
  id: 'react',
298
321
  name: 'React',
package/src/deploy/core/checkDeploy.ts CHANGED
@@ -95,7 +95,10 @@ export function findDeployProblems(
95
95
  problems,
96
96
  );
97
97
 
98
- readPublishedImage(byPath.get(DOCKER_IMAGE_WORKFLOW), problems);
98
+ const workflow = byPath.get(DOCKER_IMAGE_WORKFLOW);
99
+ if (workflow !== undefined || (options.requirePublishedImage ?? true)) {
100
+ readPublishedImage(workflow, problems);
101
+ }
99
102
 
100
103
  const gitignore = byPath.get('.gitignore');
101
104
  if (gitignore === undefined || !/^\s*\/?\.deploy\/?\s*$/m.test(gitignore)) {
package/src/deploy/core/types.ts CHANGED
@@ -71,6 +71,13 @@ export interface CheckDeployOptions {
71
71
  * @default true
72
72
  */
73
73
  requireHealthcheck?: boolean;
74
+ /**
75
+ * Whether a workflow must publish the image. A private repository with no
76
+ * CI minutes builds it on the deploy host on purpose; a workflow it does
77
+ * ship is still checked.
78
+ * @default true
79
+ */
80
+ requirePublishedImage?: boolean;
74
81
  /**
75
82
  * A comment carrying this marker inside a service waives the healthcheck for
76
83
  * it, for a worker with no HTTP surface to probe. The reason is written next
package/src/ecosystem/core/types.ts CHANGED
@@ -31,7 +31,8 @@ export type SiteId =
31
31
  | 'moles'
32
32
  | 'inorganic'
33
33
  | 'powerpoint'
34
- | 'naturals';
34
+ | 'naturals'
35
+ | 'wikidata';
35
36
 
36
37
  /** A site's name, split the way its own wordmark splits it. */
37
38
  export interface SiteName {
package/src/ecosystem/core/unlistedSites.ts CHANGED
@@ -34,4 +34,20 @@ export const UNLISTED_SITES: readonly EcosystemSite[] = [
34
34
  // apart from the white ring at 16 px.
35
35
  mark: { plate: '#c2410c', accent: '#a3e635' },
36
36
  },
37
+ {
38
+ id: 'wikidata',
39
+ name: { lead: 'wikidata', alt: 'cheminfo', dot: true },
40
+ host: 'wikidata.cheminfo.org',
41
+ tagline: 'The chemistry of Wikipedia’s infoboxes, searchable by structure.',
42
+ group: 'research',
43
+ // A leather-binding brown, the bound encyclopedia, 7.3 Oklab units from the
44
+ // nearest lead of the family (database) and 9.4:1 on white.
45
+ brand: '#5c4033',
46
+ // Wikipedia's own link blue answers it, 5.4:1 on white, so it is also the
47
+ // text half of the wordmark.
48
+ brandAlt: '#3366cc',
49
+ // On the brown plate that blue sits 24.5 apart, under the family's floor,
50
+ // so the link row of the mark takes a lighter blue of the same hue.
51
+ mark: { plate: '#5c4033', accent: '#6b9bf2' },
52
+ },
37
53
  ];
package/src/ecosystem/ui/glyphs.tsx CHANGED
@@ -530,4 +530,20 @@ export const GLYPHS: Record<SiteId, (alt: string) => ReactNode> = {
530
530
  />
531
531
  </>
532
532
  ),
533
+ // An infobox: the structure at its top, a ring, and two rows of data under
534
+ // it. The second row carries the answering colour, the blue of a link. Both
535
+ // rows and the gap between them fall on whole pixels at 16 px.
536
+ wikidata: (alt) => (
537
+ <>
538
+ <path
539
+ d="M16 5.4 20.85 8.2 20.85 13.8 16 16.6 11.15 13.8 11.15 8.2Z"
540
+ fill="none"
541
+ stroke="#ffffff"
542
+ strokeWidth="2.2"
543
+ strokeLinejoin="round"
544
+ />
545
+ <rect x="6" y="20" width="20" height="2" rx="1" fill="#ffffff" />
546
+ <rect x="6" y="24" width="14" height="4" rx="2" fill={alt} />
547
+ </>
548
+ ),
533
549
  };