react-cheminfo 0.4.1 → 0.6.0

package/README.md

@@ -30,43 +30,50 @@ would mean two Blueprint style trees in one page.
 Subpaths are **bundle boundaries, not taxonomy**: a feature gets its own door
 only when it drags a heavy dependency behind it.
 
-| Import                             | Holds                                        | Costs                 |
-| ---------------------------------- | -------------------------------------------- | --------------------- |
-| `react-cheminfo/core`              | every framework-free helper — 151 exports    | nothing               |
-| `react-cheminfo/ui`                | every React component and hook — 71 exports  | React                 |
-| `react-cheminfo/orbital`           | the 3D atomic-orbital viewer                 | React, molstar        |
-| `react-cheminfo/structure`         | the structure editor and renderer            | React, react-ocl, OCL |
-| `react-cheminfo/styles/chrome.css` | the shared tokens and site-header stylesheet | nothing               |
+| Import                             | Holds                                             | Costs                      |
+| ---------------------------------- | ------------------------------------------------- | -------------------------- |
+| `react-cheminfo/core`              | every framework-free helper — 140 value exports   | nothing                    |
+| `react-cheminfo/ui`                | every React component and hook — 60 value exports | React                      |
+| `react-cheminfo/vite`              | the prerender plugin and the OG card              | nothing; React on the card |
+| `react-cheminfo/orbital`           | the 3D atomic-orbital viewer                      | React, molstar             |
+| `react-cheminfo/structure`         | the structure editor and renderer                 | React, react-ocl, OCL      |
+| `react-cheminfo/styles/chrome.css` | the shared tokens and site-header stylesheet      | nothing                    |
 
 A backend serving an RIS endpoint, a prerender script writing a sitemap, and
 every unit test of that logic therefore load no React at all — and a worker
-sampling an orbital loads neither React nor molstar. `openchemlib`, `react-ocl`
-and `molstar` are **optional** peers, so a site that only wants the Tools menu
-downloads none of them.
+sampling an orbital loads neither React nor molstar. **Every peer is optional**,
+so a site that only wants the Tools menu downloads none of them, and a project
+that only prerenders installs neither React nor Vite.
+
+`react-cheminfo/vite` is the one door with a split bill: `cheminfoPrerender`
+needs nothing beyond Vite's own plugin type, while `ogCardHtml` renders a mark
+and therefore loads React — but on the call, not on the import, so the plugin
+stays reachable from a checkout that has neither.
 
 The stylesheet ships from `styles/`, which `tsc` leaves alone, and is reached
 through a wildcard subpath exactly as `react-science` serves its own.
 
 ## What is in it
 
-| Area                    | `…/core`                                                                                                 | `…/ui`                                                                                                                                           |
-| ----------------------- | -------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------ |
-| **Site identity**       | `siteById`, `findSiteByHost`, `siteTokensCss`, `siteThemeColor`, `renderEcosystemLinksHtml`              | `SiteMark`, `Wordmark`, `SiteTheme`, `SiteTile`, `EcosystemButton`, `EcosystemLinks`                                                             |
-| **Chrome**              | —                                                                                                        | `SiteHeader`, `SiteFooter`, `NavLink`, `NavMenuButton`, `MenuButton`, `useCompactHeader`                                                         |
-| **Citation**            | `formatCitation`, `formatCitations`, `citationSegments`, `downloadCitation`, `citedReferences`, `doiUrl` | `CiteButton`, `CitationMenu`, `CitationPreview`                                                                                                  |
-| **Share & embed**       | `parseShareConfig`, `applyShareConfig`, `buildShareUrl`, `buildEmbedCode`, `isHidden`, the param codecs  | `ShareDialog`, `ShareButton`, `HiddenPartsProvider`, `PagePart`, `useIsHidden`                                                                   |
-| **Routing & head**      | `createTabRouter`, `createPageAddresses`, `adoptLegacyHashAddress`, `writeDocumentMeta`, `canonicalLink` | —                                                                                                                                                |
-| **Pedagogy**            | `parseGlossaryMarkers`, `localStorageProgressStore`, `progressSummary`, `finishValidation`               | `GlossaryText`, `SyntaxTooltip`, `HintLadder`, `ExerciseActions`, `ExerciseProgressHeader`, `TutorialStepStrip`, `ReferenceGrid`, `TestCaseList` |
-| **Clipboard & files**   | `writeToClipboard`, `downloadBlob`, `downloadText`, `sanitizeFileName`, `toDelimited`, `readDelimited`   | `CopyButton`, `CodeBlock`, `DelimitedTextDialog`                                                                                                 |
-| **Formatting & colour** | `formatInteger`, `formatDecimal`, `formatBytes`, `pluralize`, `readableInk`, `contrastRatio`             | `ColorScaleLegend`                                                                                                                               |
-| **Widgets**             | `CREDITS`, `credits`                                                                                     | `ErrorBoundary`, `CollapsibleSection`, `CapsuleFilter`, `HelpTooltip`, `CreditsList`                                                             |
-| **Hooks & state**       | `createWorkerChannel`                                                                                    | `persistBucket`, `useDebouncedValue`, `useContainerSize`, `useListKeyboardNavigation`, `useDisclosure`                                           |
-| **Chemistry**           | `atomicOrbitalsOf`, `configurationOf`, `classifyMolfile`, `readStructure`                                | `AtomicOrbitalViewer` (`/orbital`), `StructureEditor`, `Structure` (`/structure`)                                                                |
-
-Everything in that table is exported from `./core`, `./ui` or `./structure` and
-nothing else is: the sub-components a component is built from, the parsers a
-helper calls and the internals of a hook stay inside the package, reachable only
-by their own path. If it is exported, it is supported.
+| Area                    | `…/core`                                                                                                                                                                                                          | `…/ui`                                                                                                                                           |
+| ----------------------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------ |
+| **Site identity**       | `siteById`, `findSiteByHost`, `siteTokensCss`, `siteThemeColor`, `renderEcosystemLinksHtml`                                                                                                                       | `SiteMark`, `Wordmark`, `SiteTheme`, `SiteTile`, `EcosystemButton`, `EcosystemLinks`                                                             |
+| **Chrome**              | —                                                                                                                                                                                                                 | `SiteHeader`, `SiteFooter`, `NavLink`, `NavMenuButton`, `MenuButton`, `useCompactHeader`                                                         |
+| **Citation**            | `formatCitation`, `formatCitations`, `citationSegments`, `downloadCitation`, `citedReferences`, `doiUrl`                                                                                                          | `CiteButton`, `CitationMenu`, `CitationPreview`                                                                                                  |
+| **Share & embed**       | `parseShareConfig`, `applyShareConfig`, `buildShareUrl`, `buildEmbedCode`, `isHidden`, the param codecs                                                                                                           | `ShareDialog`, `ShareButton`, `HiddenPartsProvider`, `PagePart`, `useIsHidden`                                                                   |
+| **Routing & head**      | `createTabRouter`, `createPageAddresses`, `adoptLegacyHashAddress`, `writeDocumentMeta`, `canonicalLink`                                                                                                          | —                                                                                                                                                |
+| **Indexing**            | `injectPageMeta`, `pageHeadTags`, `pageDocumentMeta`, `fill`, `PAGE_HEAD_MARKER`, `PAGE_BODY_MARKER`, `robotsTxt`, `sitemapXml`, `noscriptIndex`, `structuredDataScript`, `assertRoutes`, `routeFor`, `homeRoute` | `cheminfoPrerender`, `ogCardHtml`, `OG_WIDTH`, `OG_HEIGHT` (all `/vite`)                                                                         |
+| **Pedagogy**            | `parseGlossaryMarkers`, `localStorageProgressStore`, `progressSummary`, `finishValidation`                                                                                                                        | `GlossaryText`, `SyntaxTooltip`, `HintLadder`, `ExerciseActions`, `ExerciseProgressHeader`, `TutorialStepStrip`, `ReferenceGrid`, `TestCaseList` |
+| **Clipboard & files**   | `writeToClipboard`, `downloadBlob`, `downloadText`, `sanitizeFileName`, `toDelimited`, `readDelimited`                                                                                                            | `CopyButton`, `CodeBlock`, `DelimitedTextDialog`                                                                                                 |
+| **Formatting & colour** | `formatInteger`, `formatDecimal`, `formatBytes`, `pluralize`, `readableInk`, `contrastRatio`                                                                                                                      | `ColorScaleLegend`                                                                                                                               |
+| **Widgets**             | `CREDITS`, `credits`                                                                                                                                                                                              | `ErrorBoundary`, `CollapsibleSection`, `CapsuleFilter`, `HelpTooltip`, `CreditsList`                                                             |
+| **Hooks & state**       | `createWorkerChannel`                                                                                                                                                                                             | `persistBucket`, `useDebouncedValue`, `useContainerSize`, `useListKeyboardNavigation`, `useDisclosure`                                           |
+| **Chemistry**           | `atomicOrbitalsOf`, `configurationOf`, `classifyMolfile`, `readStructure`                                                                                                                                         | `AtomicOrbitalViewer` (`/orbital`), `StructureEditor`, `Structure` (`/structure`)                                                                |
+
+Everything in that table is exported from `./core`, `./ui`, `./vite` or
+`./structure` and nothing else is: the sub-components a component is built
+from, the parsers a helper calls and the internals of a hook stay inside the
+package, reachable only by their own path. If it is exported, it is supported.
 
 The rule for a new site is short: **`react-cheminfo` first, `react-science`
 second, your own code last.** The full import table and the checklist live in
@@ -85,11 +92,13 @@ The **Brand** toolbar at the top retunes `--brand` / `--brand-alt`, so any story
 can be read as it would look on any site of the family.
 
 The sources are organised the other way round — one folder per feature
-(`src/citation`, `src/ecosystem`, `src/share`, `src/pedagogy`, …), each holding a
-`core/` and a `ui/` half — and `src/core.ts` and `src/ui.ts` are the barrels the
-two entry points point at. ESLint forbids a `core/` folder from importing
-`react`, `react-dom` or anything under a `ui/`, which is what keeps the
-framework-free entry point honest.
+(`src/citation`, `src/ecosystem`, `src/share`, `src/seo`, `src/pedagogy`, …),
+each holding a `core/` and a `ui/` half — and `src/core.ts`, `src/ui.ts`,
+`src/vite.ts`, `src/structure.ts` and `src/orbital.ts` are the barrels the entry
+points point at. ESLint forbids a `core/` folder from importing `react`,
+`react-dom` or anything under a `ui/`, which is what keeps the framework-free
+entry points honest; `src/seo/vite` is the one half named for its consumer
+rather than for a framework, because a build plugin is neither.
 `src/shared` holds what more than one of them is built on: `MenuButton`, the
 shape every button of a site header takes, which is why `CiteButton` and
 `EcosystemButton` differ only in their glyph and their menu, and why both accept
@@ -235,6 +244,138 @@ The colours a name is set in are the site's own and are not retuned to reach the
 4.5:1 of body text: ChemCalc's teal and NMRium's orange both land just under it,
 which is why a name is set bold, where 3:1 is the threshold.
 
+## Prerendering a site
+
+A static site has no server to rewrite a head per request, so a crawler gets
+whatever came off the wire. `cheminfoPrerender` writes **one real HTML file per
+routed address** at build time, each with its own title, description and
+canonical, plus `sitemap.xml`, `robots.txt`, the JSON-LD block and the
+`noscript` crawl path. Without it every address carries the same head and a
+search engine folds the whole site into one result.
+
+### The template says where the head goes
+
+`index.html` is the **template**, and it carries no title and no description of
+its own: it declares where they go, with two comments.
+
+```html
+<head>
+  <meta charset="utf-8" />
+  <link rel="icon" href="%BASE_URL%favicon.svg" />
+  <!--cheminfo:head-->
+</head>
+<body>
+  <div id="root"></div>
+  <!--cheminfo:body-->
+</body>
+```
+
+That is the whole contract, and it is what makes the rest of this small: the
+head is _written_, never found and operated on. Nothing is parsed and nothing is
+searched for but the marker, so a byte order mark, an implicit head, a `</head>`
+the page's own prose displays or a bundled script quotes in a string, and a
+`<title>` inside an `<svg>` all leave the result exactly as it is — and no
+duplicate title or description is possible, because the template carries none. A
+page missing `<!--cheminfo:head-->` throws rather than shipping headless.
+
+`<!--cheminfo:body-->` is where the `noscript` crawl path goes, and a site
+running with `noscript: false` needs no such marker.
+
+It is a Vite plugin, and the whole of a live caller — `3d.cheminfo.org` — is:
+
+```ts
+// vite.config.ts
+import react from '@vitejs/plugin-react';
+import { cheminfoPrerender } from 'react-cheminfo/vite';
+import { defineConfig } from 'vite';
+
+import { PAGE_ROUTES } from './src/seo/routes.ts';
+
+export default defineConfig({
+  plugins: [
+    react(),
+    cheminfoPrerender({
+      site: '3d',
+      routes: PAGE_ROUTES,
+      operatingSystem: 'Any browser with WebGL2',
+    }),
+  ],
+});
+```
+
+`routes` is one `RouteMeta[]` the site owns and three things read: this plugin,
+`injectPageMeta` on a server that has one, and `writeDocumentMeta` in the
+running app after an in-app move. A page missing from it is a page a search
+engine only ever sees as the home page.
+
+`npm run dev` fills the same two markers from the home route, so a developer
+never opens a page showing its markers and dev reads like production.
+
+### The mount lives in `origin`, and nothing else
+
+**`origin` is where the site is served, mount path included** — one value
+carrying both, because that is exactly what a canonical link, an `og:url` and a
+sitemap entry need. Everything else is read back off it: `robots.txt` writes its
+`Allow` and `Disallow` under the mount, the `noscript` index links under the
+mount, and every absolute address is built on it. There is no second option to
+keep in step.
+
+```ts
+cheminfoPrerender({ site: 'surge', routes: PAGE_ROUTES });
+// origin defaults to https://surge.cheminfo.org — the site owns its host,
+// the mount is '', and /exercises is written at dist/exercises/index.html.
+
+cheminfoPrerender({
+  site: 'surge',
+  routes: PAGE_ROUTES,
+  origin: 'https://learn.cheminfo.org/surge',
+});
+// the same build, mounted under /surge: canonicals and the sitemap read
+// https://learn.cheminfo.org/surge/exercises, and robots.txt allows /surge/.
+```
+
+The **files on disk are laid out from the build's own root either way** —
+`dist/exercises/index.html`, never `dist/surge/exercises/index.html`. It is the
+server that puts them under the mount. An origin must be an absolute `http` or
+`https` address or it is refused: one written `localhost:3000` parses with
+`localhost:` as its scheme, which would read the mount back as `/3000`.
+
+`robots: false` skips `robots.txt` for a site shipping its own,
+`category: false` skips the JSON-LD block, and `noscript: false` leaves the site
+without its only crawl path — so leave it on.
+
+### The card a link unfurls into
+
+`ogCardHtml` draws `public/og.png` from the site's own record — its mark, its
+two colours, its name — so the card never drifts from the mark the site shows.
+It returns a page for a headless browser to screenshot, and it is the one export
+of this entry point that loads React, on the call rather than on the import:
+
+```ts
+// scripts/generateOgImage.ts, run with `npm run og-image`
+import { chromium } from '@playwright/test';
+import { OG_HEIGHT, OG_WIDTH, ogCardHtml } from 'react-cheminfo/vite';
+
+const browser = await chromium.launch();
+const page = await browser.newPage({
+  viewport: { width: OG_WIDTH, height: OG_HEIGHT },
+});
+await page.setContent(await ogCardHtml({ site: '3d' }), { waitUntil: 'load' });
+const png = await page.screenshot({ type: 'png' });
+await browser.close();
+```
+
+### On a site that does have a server
+
+The same head is written per request instead:
+`injectPageMeta(index, { site, routes, origin, url })`, next to the
+tracking-script injection, on `/`, `/index.html` and the SPA fallback alike — the
+served page is the same template, with the same two markers. `robotsTxt` and
+`sitemapXml` are the same two calls, answered as routes rather than written to
+disk. A server writing more into the same place composes it itself, with
+`pageHeadTags` and `fill(page, PAGE_BODY_MARKER, noscriptIndex(…))`. All of that
+is `react-cheminfo/core`, so a backend loads no React and no Vite.
+
 ## Styling
 
 **No stylesheet, nothing for a consumer to import.** Every rule is a
@@ -312,13 +453,20 @@ Then, from a throwaway app — or from the site you are about to adopt it in:
 npm i ../react-cheminfo/react-cheminfo-0.0.0.tgz
 ```
 
-Import from both entry points, so the check covers the framework-free half too:
+Import from every entry point, so the check covers the framework-free halves
+too:
 
 ```tsx
 import { CITATION_STYLES, formatCitation } from 'react-cheminfo/core';
 import { CiteButton, EcosystemButton } from 'react-cheminfo/ui';
+import { cheminfoPrerender } from 'react-cheminfo/vite';
 ```
 
+Install the tarball on its own once — **with no other dependency** — and import
+`react-cheminfo/core` and `react-cheminfo/vite` from it. Every peer is optional,
+so npm installs none of them, and either import failing means a module that
+should be framework-free is loading one at module scope.
+
 Reinstall the tarball after every `npm pack` — npm caches it by name and
 version, and this package stays at `0.0.0` until release-please cuts the first
 one.

package/lib/ecosystem/core/sites.d.ts

@@ -1,5 +1,5 @@
 /** The sites the menu links to, in the order they are listed. */
-export type SiteId = 'inchi' | 'vcl' | 'smiles' | 'chemcalc' | 'nmrium' | 'surge' | 'tex' | 'lcao' | 'regexp' | 'pdb' | 'elucidation' | 'equilibrium' | 'polycarp' | '3d' | 'periodic-table';
+export type SiteId = 'inchi' | 'vcl' | 'smiles' | 'chemcalc' | 'nmrium' | 'derepflow' | 'surge' | 'tex' | 'lcao' | 'regexp' | 'pdb' | 'elucidation' | 'equilibrium' | 'polycarp' | '3d' | 'periodic-table';
 export interface SiteName {
     /** First half of the name, set in the site's leading colour. */
     lead: string;

package/lib/ecosystem/core/sites.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"sites.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/sites.ts"],"names":[],"mappings":"AAAA,iEAAiE;AACjE,MAAM,MAAM,MAAM,GACd,OAAO,GACP,KAAK,GACL,QAAQ,GACR,UAAU,GACV,QAAQ,GACR,WAAW,GACX,OAAO,GACP,KAAK,GACL,MAAM,GACN,QAAQ,GACR,KAAK,GACL,aAAa,GACb,aAAa,GACb,UAAU,GACV,IAAI,GACJ,gBAAgB,CAAC;AAErB,MAAM,WAAW,QAAQ;IACvB,gEAAgE;IAChE,IAAI,EAAE,MAAM,CAAC;IACb,uDAAuD;IACvD,GAAG,EAAE,MAAM,CAAC;IACZ;;;;OAIG;IACH,GAAG,CAAC,EAAE,OAAO,CAAC;CACf;AAED,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,MAAM,CAAC;IACX,iEAAiE;IACjE,IAAI,EAAE,QAAQ,CAAC;IACf,yDAAyD;IACzD,IAAI,EAAE,MAAM,CAAC;IACb,4DAA4D;IAC5D,UAAU,EAAE,MAAM,CAAC;IACnB,sCAAsC;IACtC,OAAO,EAAE,MAAM,CAAC;IAChB,uDAAuD;IACvD,KAAK,EAAE,MAAM,CAAC;IACd;;;;OAIG;IACH,QAAQ,EAAE,MAAM,CAAC;IACjB,8EAA8E;IAC9E,IAAI,EAAE,cAAc,CAAC;CACtB;AAED,MAAM,WAAW,cAAc;IAC7B,+CAA+C;IAC/C,KAAK,EAAE,MAAM,CAAC;IACd,wDAAwD;IACxD,MAAM,EAAE,MAAM,CAAC;IACf;;;;OAIG;IACH,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;;GAGG;AACH,eAAO,MAAM,eAAe,EAAE,SAAS,aAAa,EAiKnD,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,OAAO,CAAC,IAAI,EAAE,aAAa,GAAG,MAAM,CAEnD"}

package/lib/ecosystem/core/sites.js

@@ -53,6 +53,16 @@ export const ECOSYSTEM_SITES = [
         brandAlt: '#2b143e',
         mark: { plate: '#2b143e', accent: '#ea580c' },
     },
+    {
+        id: 'derepflow',
+        name: { lead: 'Derep', alt: 'Flow' },
+        host: 'derepflow.cheminfo.org',
+        repository: 'https://github.com/cheminfo/derepflow',
+        tagline: 'Identify the constituents of a mixture from its ¹³C spectrum.',
+        brand: '#be185d',
+        brandAlt: '#0f766e',
+        mark: { plate: '#be185d', accent: '#0d9488' },
+    },
     {
         id: 'surge',
         name: { lead: 'surge', alt: 'cheminfo', dot: true },

package/lib/ecosystem/core/sites.js.map

@@ -1 +1 @@
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package/lib/ecosystem/ui/glyphs.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"glyphs.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/ui/glyphs.tsx"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAE/C,4DAA4D;AAC5D,eAAO,MAAM,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,SAAS,CAoO7D,CAAC"}
+{"version":3,"file":"glyphs.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/ui/glyphs.tsx"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAE/C,4DAA4D;AAC5D,eAAO,MAAM,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,SAAS,CAuP7D,CAAC"}

package/lib/ecosystem/ui/glyphs.js

@@ -9,6 +9,9 @@ export const GLYPHS = {
     smiles: (alt) => (_jsxs(_Fragment, { children: [_jsx("path", { d: "M16 7.5 22.1 11.1 22.1 18.3 16 21.9 9.9 18.3 9.9 11.1Z", fill: "none", stroke: "#ffffff", strokeWidth: "2.2", strokeLinejoin: "round" }), _jsx("path", { d: "M5.5 25.5h21", fill: "none", stroke: alt, strokeWidth: "3", strokeLinecap: "round" })] })),
     // An isotopic pattern: the answer this one is asked for most.
     chemcalc: (alt) => (_jsxs("g", { strokeLinecap: "round", strokeWidth: "3.4", fill: "none", children: [_jsx("path", { d: "M9 24V15", stroke: "#ffffff" }), _jsx("path", { d: "M16 24V7", stroke: alt }), _jsx("path", { d: "M23 24V18", stroke: "#ffffff" })] })),
+    // Three peaks of a mixture over the funnel that narrows them to one compound,
+    // which is the dereplication this one does.
+    derepflow: (alt) => (_jsxs(_Fragment, { children: [_jsxs("g", { stroke: "#ffffff", strokeWidth: "4", strokeLinecap: "round", fill: "none", children: [_jsx("path", { d: "M7 15.6V9.4" }), _jsx("path", { d: "M16 15.6V4.6" }), _jsx("path", { d: "M25 15.6v-4.6" })] }), _jsx("path", { d: "M6.2 20.4 16 27 25.8 20.4", stroke: alt, strokeWidth: "4", strokeLinecap: "round", strokeLinejoin: "round", fill: "none" })] })),
     // The official NMRium symbol, from `Logo.tsx` of the NMRium sources: the
     // orange half is theirs, and the half their logo sets in plum is set in white
     // here because the plate already is that plum.

package/lib/ecosystem/ui/glyphs.js.map

@@ -1 +1 @@
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package/lib/orbital/ui/AtomicOrbitalCanvas.d.ts

@@ -35,6 +35,11 @@ export interface AtomicOrbitalCanvasProps {
      * @default false
      */
     spinning?: boolean;
+    /**
+     * How fast it turns, in molstar's own spin unit. Lower is slower.
+     * @default 0.3
+     */
+    spinSpeed?: number;
     /**
      * How the field is produced. Supply a worker-backed sampler to keep the main
      * thread free; the default runs in process.

package/lib/orbital/ui/AtomicOrbitalCanvas.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"AtomicOrbitalCanvas.d.ts","sourceRoot":"","sources":["../../../src/orbital/ui/AtomicOrbitalCanvas.tsx"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAiB,YAAY,EAAE,MAAM,OAAO,CAAC;AAGzD,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAC9D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAMvD,4CAA4C;AAC5C,MAAM,WAAW,wBAAwB;IACvC,6CAA6C;IAC7C,YAAY,EAAE,MAAM,CAAC;IACrB,wCAAwC;IACxC,SAAS,EAAE,MAAM,CAAC;IAClB;;;OAGG;IACH,OAAO,CAAC,EAAE,YAAY,CAAC;IACvB;;;;;;;OAOG;IACH,UAAU,CAAC,EAAE,MAAM,GAAG,gBAAgB,CAAC;IACvC;;;;OAIG;IACH,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB;;;;OAIG;IACH,MAAM,CAAC,EAAE,aAAa,CAAC;IACvB;;;;OAIG;IACH,WAAW,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;IACxC;;;OAGG;IACH,OAAO,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;CACrC;AAED;;;;GAIG;AACH,wBAAgB,mBAAmB,CACjC,KAAK,EAAE,wBAAwB,GAC9B,YAAY,CAkFd"}
+{"version":3,"file":"AtomicOrbitalCanvas.d.ts","sourceRoot":"","sources":["../../../src/orbital/ui/AtomicOrbitalCanvas.tsx"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAiB,YAAY,EAAE,MAAM,OAAO,CAAC;AAGzD,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAC9D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEvD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAOvD,4CAA4C;AAC5C,MAAM,WAAW,wBAAwB;IACvC,6CAA6C;IAC7C,YAAY,EAAE,MAAM,CAAC;IACrB,wCAAwC;IACxC,SAAS,EAAE,MAAM,CAAC;IAClB;;;OAGG;IACH,OAAO,CAAC,EAAE,YAAY,CAAC;IACvB;;;;;;;OAOG;IACH,UAAU,CAAC,EAAE,MAAM,GAAG,gBAAgB,CAAC;IACvC;;;;OAIG;IACH,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;;;;OAIG;IACH,MAAM,CAAC,EAAE,aAAa,CAAC;IACvB;;;;OAIG;IACH,WAAW,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,IAAI,CAAC;IACxC;;;OAGG;IACH,OAAO,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAC;CACrC;AAED;;;;GAIG;AACH,wBAAgB,mBAAmB,CACjC,KAAK,EAAE,wBAAwB,GAC9B,YAAY,CAmFd"}

package/lib/orbital/ui/AtomicOrbitalCanvas.js

@@ -2,6 +2,7 @@ import { jsx as _jsx } from "react/jsx-runtime";
 import { useEffect, useRef, useState } from 'react';
 import { PHASE_PALETTES } from "../core/palette.js";
 import { sampleInProcess } from "../core/sample.js";
+import { DEFAULT_SPIN_SPEED } from "./camera.js";
 import { createOrbitalViewer } from "./viewer.js";
 /**
  * Mount one molstar canvas and keep it showing the orbital named by the props.
@@ -9,7 +10,7 @@ import { createOrbitalViewer } from "./viewer.js";
  * @returns The canvas, with a progress note while it samples.
  */
 export function AtomicOrbitalCanvas(props) {
-    const { atomicNumber, orbitalId, palette = PHASE_PALETTES.textbook, resolution = DEFAULT_RESOLUTION, spinning = false, sample = sampleInProcess, onNodeRadii, onError, } = props;
+    const { atomicNumber, orbitalId, palette = PHASE_PALETTES.textbook, resolution = DEFAULT_RESOLUTION, spinning = false, spinSpeed = DEFAULT_SPIN_SPEED, sample = sampleInProcess, onNodeRadii, onError, } = props;
     const containerRef = useRef(null);
     const viewerRef = useRef(null);
     const [drawn, setDrawn] = useState(null);
@@ -70,8 +71,8 @@ export function AtomicOrbitalCanvas(props) {
         };
     }, [atomicNumber, orbitalId, resolution, palette, sample, wanted]);
     useEffect(() => {
-        void viewerRef.current?.setSpin(spinning);
-    }, [spinning]);
+        void viewerRef.current?.setSpin(spinning, spinSpeed);
+    }, [spinning, spinSpeed]);
     return (_jsx("div", { ref: containerRef, style: CANVAS_STYLE, children: busy && _jsx("div", { style: BUSY_STYLE, children: "Sampling\u2026" }) }));
 }
 /** Samples per edge; 56 resolves the radial node of a 3s in about 25 ms. */

package/lib/orbital/ui/AtomicOrbitalCanvas.js.map

@@ -1 +1 @@
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package/lib/orbital/ui/AtomicOrbitalViewer.d.ts

@@ -43,6 +43,11 @@ export interface AtomicOrbitalViewerProps {
      * @default false
      */
     spinning?: boolean;
+    /**
+     * How fast it turns, in molstar's own spin unit. Lower is slower.
+     * @default 0.3
+     */
+    spinSpeed?: number;
     /**
      * How the field is produced. Supply a worker-backed sampler to keep the main
      * thread free; the default runs in process.

package/lib/orbital/ui/AtomicOrbitalViewer.d.ts.map

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package/lib/orbital/ui/AtomicOrbitalViewer.js.map

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package/lib/orbital/ui/axesGeometry.d.ts

@@ -0,0 +1,27 @@
+/**
+ * The geometry of the cartesian frame: three rods through the origin and the
+ * three letters that name them.
+ *
+ * It is arithmetic over positions, which is why it is here rather than in
+ * `renderAxes.ts` — that module is about representations, exactly as
+ * `volumeField.ts` is to `renderVolume.ts`.
+ */
+import type { Mesh } from 'molstar/lib/mol-geo/geometry/mesh/mesh.js';
+import type { Text } from 'molstar/lib/mol-geo/geometry/text/text.js';
+/** How far a rod, and a label, sit from the origin as fractions of the reach. */
+export declare const ROD_LENGTH = 1.06;
+export declare const LABEL_SIZE = 0.1;
+/**
+ * Three rods through the origin, each with an arrowhead on its positive end.
+ * @param reach - How far the orbital reaches, in scene units.
+ * @returns The mesh, one group per axis.
+ */
+export declare function buildAxisRods(reach: number): Mesh;
+/**
+ * One label just beyond each arrowhead.
+ * @param at - Distance from the origin the labels sit at, in scene units.
+ * @param labels - What the axes are called, in x, y, z order.
+ * @returns The text geometry, one group per axis.
+ */
+export declare function buildAxisLabels(at: number, labels: readonly string[]): Text;
+//# sourceMappingURL=axesGeometry.d.ts.map

package/lib/orbital/ui/axesGeometry.d.ts.map

@@ -0,0 +1 @@
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package/lib/orbital/ui/axesGeometry.js

@@ -0,0 +1,74 @@
+/**
+ * The geometry of the cartesian frame: three rods through the origin and the
+ * three letters that name them.
+ *
+ * It is arithmetic over positions, which is why it is here rather than in
+ * `renderAxes.ts` — that module is about representations, exactly as
+ * `volumeField.ts` is to `renderVolume.ts`.
+ */
+import { addCylinder } from 'molstar/lib/mol-geo/geometry/mesh/builder/cylinder.js';
+import { MeshBuilder } from 'molstar/lib/mol-geo/geometry/mesh/mesh-builder.js';
+import { TextBuilder } from 'molstar/lib/mol-geo/geometry/text/text-builder.js';
+import { Vec3 } from 'molstar/lib/mol-math/linear-algebra.js';
+/** How far a rod, and a label, sit from the origin as fractions of the reach. */
+export const ROD_LENGTH = 1.06;
+export const LABEL_SIZE = 0.1;
+/** Rod radius, as a fraction of the reach. */
+const ROD_RADIUS = 0.006;
+/** Arrowhead length as a fraction of the rod's half-length. */
+const HEAD_LENGTH = 0.06;
+/** Arrowhead radius as a multiple of the rod's. */
+const HEAD_FLARE = 4;
+/** x, y and z, in the order their labels are given in. */
+const AXIS_DIRECTIONS = [
+    Vec3.create(1, 0, 0),
+    Vec3.create(0, 1, 0),
+    Vec3.create(0, 0, 1),
+];
+/**
+ * Three rods through the origin, each with an arrowhead on its positive end.
+ * @param reach - How far the orbital reaches, in scene units.
+ * @returns The mesh, one group per axis.
+ */
+export function buildAxisRods(reach) {
+    const state = MeshBuilder.createState(1024, 512);
+    const length = reach * ROD_LENGTH;
+    const radius = reach * ROD_RADIUS;
+    const head = length * HEAD_LENGTH;
+    for (const [axis, direction] of AXIS_DIRECTIONS.entries()) {
+        state.currentGroup = axis;
+        const start = Vec3.scale(Vec3.zero(), direction, -length);
+        const neck = Vec3.scale(Vec3.zero(), direction, length - head);
+        const tip = Vec3.scale(Vec3.zero(), direction, length);
+        addCylinder(state, start, neck, 1, {
+            radiusTop: radius,
+            radiusBottom: radius,
+            topCap: true,
+            bottomCap: true,
+            radialSegments: 12,
+        });
+        addCylinder(state, neck, tip, 1, {
+            radiusTop: 0,
+            radiusBottom: radius * HEAD_FLARE,
+            topCap: true,
+            bottomCap: true,
+            radialSegments: 16,
+        });
+    }
+    return MeshBuilder.getMesh(state);
+}
+/**
+ * One label just beyond each arrowhead.
+ * @param at - Distance from the origin the labels sit at, in scene units.
+ * @param labels - What the axes are called, in x, y, z order.
+ * @returns The text geometry, one group per axis.
+ */
+export function buildAxisLabels(at, labels) {
+    const builder = TextBuilder.create({}, 3, 3);
+    for (const [axis, direction] of AXIS_DIRECTIONS.entries()) {
+        const position = Vec3.scale(Vec3.zero(), direction, at);
+        builder.add(labels[axis] ?? '', position[0], position[1], position[2], 0, 1, axis);
+    }
+    return builder.getText();
+}
+//# sourceMappingURL=axesGeometry.js.map

package/lib/orbital/ui/axesGeometry.js.map

@@ -0,0 +1 @@
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package/lib/orbital/ui/camera.d.ts

@@ -6,6 +6,13 @@
 import type { PluginContext } from 'molstar/lib/mol-plugin/context.js';
 /** Transition length used when the caller does not pick one, milliseconds. */
 export declare const DEFAULT_CAMERA_DURATION = 250;
+/**
+ * Turn rate used when the caller does not pick one, in molstar's own spin unit.
+ *
+ * A lobe has to stay in one place long enough to be read; molstar's own 1 turns
+ * an orbital fast enough that the phases blur into each other.
+ */
+export declare const DEFAULT_SPIN_SPEED = 0.3;
 /**
  * Frame everything currently in the scene.
  * @param plugin - The molstar context.