react-cheminfo 0.39.0 → 0.40.0

package/bin/check-deploy.mjs

@@ -1,8 +1,8 @@
 #!/usr/bin/env node
 /*
  * Report every way a repository would break, or silently mis-deploy, under the
- * server's global deploy script: a compose file it would not find, an image with
- * no selectable tag, a page the browser keeps across a deploy and then cannot
+ * server's global deploy script: a compose file it would not find, an image
+ * nothing publishes or that carries no selectable tag, a page the browser keeps across a deploy and then cannot
  * run, an `IMAGE_NAME` naming a package this repository never publishes, an
  * `env_file` that fails on a checkout with no `.env` yet, a service with no
  * health probe to read, an `.env.example` that hides a mode.
@@ -26,6 +26,7 @@ import process from 'node:process';
 
 import {
   DEPLOY_COMPOSE_FILES,
+  DOCKER_IMAGE_WORKFLOW,
   NGINX_CONFIG,
   PAGE_CACHE_CONFIG,
   findDeployProblems,
@@ -77,6 +78,7 @@ for (const path of [
   'Dockerfile',
   PAGE_CACHE_CONFIG,
   NGINX_CONFIG,
+  DOCKER_IMAGE_WORKFLOW,
 ]) {
   const text = read(path);
   if (text !== undefined) files.push({ path, text });

package/lib/deploy/core/checkDeploy.d.ts

@@ -8,7 +8,9 @@ import type { CheckDeployOptions, DeployFile, DeployProblem } from './types.ts';
  * reports it healthy. So a repository has to hand it a selectable tag on every
  * image we build, an `IMAGE_NAME` that names the package our own workflow
  * publishes, a compose file that parses on a checkout with no `.env` yet, and a
- * health probe to read. It also has to hand the browser a page the browser will
+ * health probe to read. It also has to publish that image in the first place:
+ * with no `latest` to pull the script builds from source on the deploy host,
+ * and the install that follows must survive a blip in the registry. It also has to hand the browser a page the browser will
  * not keep, or the next deploy leaves returning visitors on a blank one. Each
  * of those is invisible until a deploy, which is the
  * worst moment to discover it — an `env_file` without `required: false` fails

package/lib/deploy/core/checkDeploy.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"checkDeploy.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/checkDeploy.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,kBAAkB,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAGhF;;;;;;;;;;;;;;;;;;;;GAoBG;AACH,wBAAgB,kBAAkB,CAChC,KAAK,EAAE,SAAS,UAAU,EAAE,EAC5B,OAAO,GAAE,kBAAuB,GAC/B,aAAa,EAAE,CAkEjB"}

package/lib/deploy/core/checkDeploy.js

@@ -1,6 +1,7 @@
 import { readComposeFile } from "./composeFile.js";
 import { readEnvExample } from "./envExample.js";
 import { readPageCache } from "./pageCache.js";
+import { DOCKER_IMAGE_WORKFLOW, readInstallRetries, readPublishedImage, } from "./publishedImage.js";
 import { DEPLOY_COMPOSE_FILES } from "./types.js";
 /**
  * Every way a repository would break, or silently mis-deploy, under the
@@ -11,7 +12,9 @@ import { DEPLOY_COMPOSE_FILES } from "./types.js";
  * reports it healthy. So a repository has to hand it a selectable tag on every
  * image we build, an `IMAGE_NAME` that names the package our own workflow
  * publishes, a compose file that parses on a checkout with no `.env` yet, and a
- * health probe to read. It also has to hand the browser a page the browser will
+ * health probe to read. It also has to publish that image in the first place:
+ * with no `latest` to pull the script builds from source on the deploy host,
+ * and the install that follows must survive a blip in the registry. It also has to hand the browser a page the browser will
  * not keep, or the next deploy leaves returning visitors on a blank one. Each
  * of those is invisible until a deploy, which is the
  * worst moment to discover it — an `env_file` without `required: false` fails
@@ -63,8 +66,11 @@ export function findDeployProblems(files, options = {}) {
         readEnvExample(envExample, expected, problems);
     }
     const dockerfile = byPath.get('Dockerfile');
-    if (dockerfile !== undefined)
+    if (dockerfile !== undefined) {
         readPageCache(dockerfile, byPath, problems);
+        readInstallRetries(dockerfile, problems);
+    }
+    readPublishedImage(byPath.get(DOCKER_IMAGE_WORKFLOW), problems);
     const gitignore = byPath.get('.gitignore');
     if (gitignore === undefined || !/^\s*\/?\.deploy\/?\s*$/m.test(gitignore)) {
         problems.push({

package/lib/deploy/core/checkDeploy.js.map

@@ -1 +1 @@
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+{"version":3,"file":"checkDeploy.js","sourceRoot":"","sources":["../../../src/deploy/core/checkDeploy.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACnD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,GACnB,MAAM,qBAAqB,CAAC;AAE7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,YAAY,CAAC;AAElD;;;;;;;;;;;;;;;;;;;;GAoBG;AACH,MAAM,UAAU,kBAAkB,CAChC,KAA4B,EAC5B,UAA8B,EAAE;IAEhC,MAAM,QAAQ,GAAG,OAAO,CAAC,YAAY,IAAI,oBAAoB,CAAC;IAC9D,MAAM,KAAK,GAAG;QACZ,SAAS,EAAE,OAAO,CAAC,SAAS;QAC5B,aAAa,EAAE,OAAO,CAAC,aAAa,IAAI,EAAE;QAC1C,kBAAkB,EAAE,OAAO,CAAC,kBAAkB,IAAI,IAAI;QACtD,iBAAiB,EAAE,CACjB,OAAO,CAAC,iBAAiB,IAAI,gBAAgB,CAC9C,CAAC,WAAW,EAAE;QACf,SAAS,EAAE,CAAC,OAAO,CAAC,SAAS,IAAI,QAAQ,CAAC,CAAC,WAAW,EAAE;KACzD,CAAC;IAEF,MAAM,MAAM,GAAG,IAAI,GAAG,EAAkB,CAAC;IACzC,KAAK,MAAM,IAAI,IAAI,KAAK;QAAE,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;IAE3D,MAAM,QAAQ,GAAoB,EAAE,CAAC;IAErC,KAAK,MAAM,IAAI,IAAI,QAAQ,EAAE,CAAC;QAC5B,MAAM,IAAI,GAAG,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAC9B,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;YACvB,QAAQ,CAAC,IAAI,CAAC;gBACZ,IAAI,EAAE,IAAI;gBACV,IAAI,EAAE,CAAC;gBACP,IAAI,EAAE,iBAAiB;gBACvB,OAAO,EAAE,8CAA8C;gBACvD,IAAI,EAAE,UAAU,IAAI,yBAAyB;aAC9C,CAAC,CAAC;QACL,CAAC;aAAM,CAAC;YACN,eAAe,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,QAAQ,CAAC,CAAC;QAC/C,CAAC;IACH,CAAC;IAED,MAAM,UAAU,GAAG,MAAM,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IAC9C,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;QAC7B,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,cAAc;YACpB,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EAAE,8CAA8C;YACvD,IAAI,EAAE,kFAAkF;SACzF,CAAC,CAAC;IACL,CAAC;SAAM,CAAC;QACN,cAAc,CAAC,UAAU,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC;IACjD,CAAC;IAED,MAAM,UAAU,GAAG,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC5C,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;QAC7B,aAAa,CAAC,UAAU,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAC;QAC5C,kBAAkB,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;IAC3C,CAAC;IAED,kBAAkB,CAAC,MAAM,CAAC,GAAG,CAAC,qBAAqB,CAAC,EAAE,QAAQ,CAAC,CAAC;IAEhE,MAAM,SAAS,GAAG,MAAM,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAC3C,IAAI,SAAS,KAAK,SAAS,IAAI,CAAC,yBAAyB,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC;QAC1E,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,YAAY;YAClB,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,uBAAuB;YAC7B,OAAO,EACL,8EAA8E;YAChF,IAAI,EAAE,kCAAkC;SACzC,CAAC,CAAC;IACL,CAAC;IAED,OAAO,QAAQ,CAAC;AAClB,CAAC"}

package/lib/deploy/core/index.d.ts

@@ -1,5 +1,6 @@
 export { findDeployProblems } from './checkDeploy.ts';
 export type { CheckDeployOptions, DeployFile, DeployProblem, DeployProblemKind, } from './types.ts';
 export { NGINX_CONFIG, PAGE_CACHE_CONFIG } from './pageCache.ts';
+export { DOCKER_IMAGE_WORKFLOW, readInstallRetries, readPublishedImage, } from './publishedImage.ts';
 export { DEPLOY_COMPOSE_FILES } from './types.ts';
 //# sourceMappingURL=index.d.ts.map

package/lib/deploy/core/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AACtD,YAAY,EACV,kBAAkB,EAClB,UAAU,EACV,aAAa,EACb,iBAAiB,GAClB,MAAM,YAAY,CAAC;AACpB,OAAO,EAAE,YAAY,EAAE,iBAAiB,EAAE,MAAM,gBAAgB,CAAC;AACjE,OAAO,EAAE,oBAAoB,EAAE,MAAM,YAAY,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AACtD,YAAY,EACV,kBAAkB,EAClB,UAAU,EACV,aAAa,EACb,iBAAiB,GAClB,MAAM,YAAY,CAAC;AACpB,OAAO,EAAE,YAAY,EAAE,iBAAiB,EAAE,MAAM,gBAAgB,CAAC;AACjE,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,GACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,YAAY,CAAC"}

package/lib/deploy/core/index.js

@@ -1,4 +1,5 @@
 export { findDeployProblems } from "./checkDeploy.js";
 export { NGINX_CONFIG, PAGE_CACHE_CONFIG } from "./pageCache.js";
+export { DOCKER_IMAGE_WORKFLOW, readInstallRetries, readPublishedImage, } from "./publishedImage.js";
 export { DEPLOY_COMPOSE_FILES } from "./types.js";
 //# sourceMappingURL=index.js.map

package/lib/deploy/core/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/deploy/core/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,kBAAkB,EAAE,MAAM,kBAAkB,CAAC;AAOtD,OAAO,EAAE,YAAY,EAAE,iBAAiB,EAAE,MAAM,gBAAgB,CAAC;AACjE,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,GACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,YAAY,CAAC"}

package/lib/deploy/core/publishedImage.d.ts

@@ -0,0 +1,30 @@
+import type { DeployProblem } from './types.ts';
+/** The workflow that publishes this repository's image, at its fixed path. */
+export declare const DOCKER_IMAGE_WORKFLOW = ".github/workflows/docker-image.yml";
+/**
+ * Report a repository whose image is never published with a `latest` tag.
+ *
+ * The shared workflow derives `:<version>`, `:<major>.<minor>`, `:<major>` and
+ * `:latest` from `tag-version` alone; given nothing it publishes a single
+ * `:HEAD` and no `latest`. Compose files default to `${IMAGE_TAG:-latest}`, so
+ * the deploy then has nothing to pull and builds the image on the deploy host
+ * instead — which is how a registry blip, a build timeout or an out-of-memory
+ * kill becomes an outage, reported against npm rather than against the missing
+ * tag. The workflow, the release and the push all succeed, so nothing says so.
+ * @param workflow - The docker-image workflow, or undefined when there is none.
+ * @param problems - Where each problem found is appended.
+ */
+export declare function readPublishedImage(workflow: string | undefined, problems: DeployProblem[]): void;
+/**
+ * Report a build stage that installs with npm's own patience.
+ *
+ * A deploy with no image to pull builds from source on the deploy host, so the
+ * whole dependency closure comes over the network at the one moment nothing may
+ * fail. npm's two default retries are capped at a minute and spent in under
+ * twenty seconds, which is short enough that an ordinary blip reads as a broken
+ * repository — so each stage that installs says how long it is willing to try.
+ * @param dockerfile - The Dockerfile.
+ * @param problems - Where each problem found is appended.
+ */
+export declare function readInstallRetries(dockerfile: string, problems: DeployProblem[]): void;
+//# sourceMappingURL=publishedImage.d.ts.map

package/lib/deploy/core/publishedImage.d.ts.map

@@ -0,0 +1 @@
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package/lib/deploy/core/publishedImage.js

@@ -0,0 +1,96 @@
+/** The workflow that publishes this repository's image, at its fixed path. */
+export const DOCKER_IMAGE_WORKFLOW = '.github/workflows/docker-image.yml';
+const TAG_VERSION = /^\s*tag-version:\s*(?<value>.+?)\s*$/m;
+const INSTALL = /^\s*RUN\s+npm\s+ci\b/;
+const RETRIES = /^\s*ENV\s+.*\bNPM_CONFIG_FETCH_RETRIES=/;
+const STAGE = /^\s*FROM\s+/i;
+// Written with an escaped brace so it is not read as an interpolation here.
+const GUARDED = `\${{ github.event_name == 'push' && github.ref_name || '' }}`;
+/**
+ * Report a repository whose image is never published with a `latest` tag.
+ *
+ * The shared workflow derives `:<version>`, `:<major>.<minor>`, `:<major>` and
+ * `:latest` from `tag-version` alone; given nothing it publishes a single
+ * `:HEAD` and no `latest`. Compose files default to `${IMAGE_TAG:-latest}`, so
+ * the deploy then has nothing to pull and builds the image on the deploy host
+ * instead — which is how a registry blip, a build timeout or an out-of-memory
+ * kill becomes an outage, reported against npm rather than against the missing
+ * tag. The workflow, the release and the push all succeed, so nothing says so.
+ * @param workflow - The docker-image workflow, or undefined when there is none.
+ * @param problems - Where each problem found is appended.
+ */
+export function readPublishedImage(workflow, problems) {
+    if (workflow === undefined) {
+        problems.push({
+            file: DOCKER_IMAGE_WORKFLOW,
+            line: 0,
+            kind: 'unpublishable-image',
+            message: 'nothing publishes an image, so every deploy builds one on the server',
+            hint: 'add docker-image.yml, calling the shared workflow on a v* tag with a guarded tag-version',
+        });
+        return;
+    }
+    const match = TAG_VERSION.exec(workflow);
+    if (match?.groups === undefined) {
+        problems.push({
+            file: DOCKER_IMAGE_WORKFLOW,
+            line: lineOf(workflow, /docker-image\.yml@docker-image/),
+            kind: 'unpublishable-image',
+            message: 'no tag-version, so the package gets a single :HEAD and no :latest for a compose file to pull',
+            hint: `with: tag-version: ${GUARDED}`,
+        });
+        return;
+    }
+    const value = match.groups.value ?? '';
+    if (value.includes('github.ref_name') && !value.includes('event_name')) {
+        problems.push({
+            file: DOCKER_IMAGE_WORKFLOW,
+            line: lineOf(workflow, TAG_VERSION),
+            kind: 'unpublishable-image',
+            message: 'tag-version is the bare ref, which on a manual run is a branch name split as if it were a semver',
+            hint: `guard it: ${GUARDED}`,
+        });
+    }
+}
+/**
+ * Report a build stage that installs with npm's own patience.
+ *
+ * A deploy with no image to pull builds from source on the deploy host, so the
+ * whole dependency closure comes over the network at the one moment nothing may
+ * fail. npm's two default retries are capped at a minute and spent in under
+ * twenty seconds, which is short enough that an ordinary blip reads as a broken
+ * repository — so each stage that installs says how long it is willing to try.
+ * @param dockerfile - The Dockerfile.
+ * @param problems - Where each problem found is appended.
+ */
+export function readInstallRetries(dockerfile, problems) {
+    const lines = dockerfile.split('\n');
+    let patient = false;
+    for (let index = 0; index < lines.length; index++) {
+        const line = lines[index] ?? '';
+        // ENV does not cross a FROM, so each stage answers for itself.
+        if (STAGE.test(line)) {
+            patient = false;
+        }
+        else if (RETRIES.test(line)) {
+            patient = true;
+        }
+        else if (INSTALL.test(line) && !patient) {
+            problems.push({
+                file: 'Dockerfile',
+                line: index + 1,
+                kind: 'brittle-install',
+                message: "npm ci installs with npm's two default retries, so a network blip of twenty seconds fails the deploy",
+                hint: 'ENV NPM_CONFIG_FETCH_RETRIES=5 NPM_CONFIG_FETCH_RETRY_MAXTIMEOUT=120000 above it, in this stage',
+            });
+            patient = true;
+        }
+    }
+}
+function lineOf(text, pattern) {
+    const match = pattern.exec(text);
+    if (match === null)
+        return 0;
+    return text.slice(0, match.index).split('\n').length;
+}
+//# sourceMappingURL=publishedImage.js.map

package/lib/deploy/core/publishedImage.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"publishedImage.js","sourceRoot":"","sources":["../../../src/deploy/core/publishedImage.ts"],"names":[],"mappings":"AAEA,8EAA8E;AAC9E,MAAM,CAAC,MAAM,qBAAqB,GAAG,oCAAoC,CAAC;AAE1E,MAAM,WAAW,GAAG,uCAAuC,CAAC;AAC5D,MAAM,OAAO,GAAG,sBAAsB,CAAC;AACvC,MAAM,OAAO,GAAG,yCAAyC,CAAC;AAC1D,MAAM,KAAK,GAAG,cAAc,CAAC;AAC7B,4EAA4E;AAC5E,MAAM,OAAO,GAAG,8DAA8D,CAAC;AAE/E;;;;;;;;;;;;GAYG;AACH,MAAM,UAAU,kBAAkB,CAChC,QAA4B,EAC5B,QAAyB;IAEzB,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;QAC3B,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,qBAAqB;YAC3B,IAAI,EAAE,CAAC;YACP,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EACL,sEAAsE;YACxE,IAAI,EAAE,0FAA0F;SACjG,CAAC,CAAC;QACH,OAAO;IACT,CAAC;IAED,MAAM,KAAK,GAAG,WAAW,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IACzC,IAAI,KAAK,EAAE,MAAM,KAAK,SAAS,EAAE,CAAC;QAChC,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,qBAAqB;YAC3B,IAAI,EAAE,MAAM,CAAC,QAAQ,EAAE,gCAAgC,CAAC;YACxD,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EACL,8FAA8F;YAChG,IAAI,EAAE,sBAAsB,OAAO,EAAE;SACtC,CAAC,CAAC;QACH,OAAO;IACT,CAAC;IAED,MAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,KAAK,IAAI,EAAE,CAAC;IACvC,IAAI,KAAK,CAAC,QAAQ,CAAC,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,YAAY,CAAC,EAAE,CAAC;QACvE,QAAQ,CAAC,IAAI,CAAC;YACZ,IAAI,EAAE,qBAAqB;YAC3B,IAAI,EAAE,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC;YACnC,IAAI,EAAE,qBAAqB;YAC3B,OAAO,EACL,kGAAkG;YACpG,IAAI,EAAE,aAAa,OAAO,EAAE;SAC7B,CAAC,CAAC;IACL,CAAC;AACH,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,kBAAkB,CAChC,UAAkB,EAClB,QAAyB;IAEzB,MAAM,KAAK,GAAG,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IACrC,IAAI,OAAO,GAAG,KAAK,CAAC;IACpB,KAAK,IAAI,KAAK,GAAG,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC;QAClD,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;QAChC,+DAA+D;QAC/D,IAAI,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YACrB,OAAO,GAAG,KAAK,CAAC;QAClB,CAAC;aAAM,IAAI,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YAC9B,OAAO,GAAG,IAAI,CAAC;QACjB,CAAC;aAAM,IAAI,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC;YAC1C,QAAQ,CAAC,IAAI,CAAC;gBACZ,IAAI,EAAE,YAAY;gBAClB,IAAI,EAAE,KAAK,GAAG,CAAC;gBACf,IAAI,EAAE,iBAAiB;gBACvB,OAAO,EACL,sGAAsG;gBACxG,IAAI,EAAE,iGAAiG;aACxG,CAAC,CAAC;YACH,OAAO,GAAG,IAAI,CAAC;QACjB,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,MAAM,CAAC,IAAY,EAAE,OAAe;IAC3C,MAAM,KAAK,GAAG,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACjC,IAAI,KAAK,KAAK,IAAI;QAAE,OAAO,CAAC,CAAC;IAC7B,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;AACvD,CAAC"}

package/lib/deploy/core/types.d.ts

@@ -1,5 +1,5 @@
 /** What a repository got wrong against the deployment contract. */
-export type DeployProblemKind = 'missing-compose' | 'invalid-compose' | 'unpinned-image' | 'missing-build' | 'wrong-image-name' | 'required-env-file' | 'floating-sidecar' | 'missing-healthcheck' | 'missing-env-example' | 'missing-deploy-ignore' | 'cacheable-page';
+export type DeployProblemKind = 'missing-compose' | 'invalid-compose' | 'unpinned-image' | 'missing-build' | 'wrong-image-name' | 'required-env-file' | 'floating-sidecar' | 'missing-healthcheck' | 'missing-env-example' | 'missing-deploy-ignore' | 'cacheable-page' | 'unpublishable-image' | 'brittle-install';
 /** One way a repository would fail, or silently mis-deploy, on the server. */
 export interface DeployProblem {
     /** The file it was found in, named as the caller named it. */

package/lib/deploy/core/types.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/types.ts"],"names":[],"mappings":"AAAA,mEAAmE;AACnE,MAAM,MAAM,iBAAiB,GACzB,iBAAiB,GACjB,iBAAiB,GACjB,gBAAgB,GAChB,eAAe,GACf,kBAAkB,GAClB,mBAAmB,GACnB,kBAAkB,GAClB,qBAAqB,GACrB,qBAAqB,GACrB,uBAAuB,GACvB,gBAAgB,CAAC;AAErB,8EAA8E;AAC9E,MAAM,WAAW,aAAa;IAC5B,8DAA8D;IAC9D,IAAI,EAAE,MAAM,CAAC;IACb,6EAA6E;IAC7E,IAAI,EAAE,MAAM,CAAC;IACb,kCAAkC;IAClC,IAAI,EAAE,iBAAiB,CAAC;IACxB,kCAAkC;IAClC,OAAO,EAAE,MAAM,CAAC;IAChB,0CAA0C;IAC1C,IAAI,EAAE,MAAM,CAAC;CACd;AAED,sEAAsE;AACtE,MAAM,WAAW,UAAU;IACzB,iDAAiD;IACjD,IAAI,EAAE,MAAM,CAAC;IACb,mBAAmB;IACnB,IAAI,EAAE,MAAM,CAAC;CACd;AAED,4CAA4C;AAC5C,MAAM,WAAW,kBAAkB;IACjC;;;;;OAKG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;;;;OAIG;IACH,aAAa,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAClC;;;;OAIG;IACH,YAAY,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IACjC;;;;OAIG;IACH,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B;;;;;OAKG;IACH,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B;;;;;OAKG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED;;;GAGG;AACH,eAAO,MAAM,oBAAoB,EAAE,SAAS,MAAM,EAIjD,CAAC"}
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/deploy/core/types.ts"],"names":[],"mappings":"AAAA,mEAAmE;AACnE,MAAM,MAAM,iBAAiB,GACzB,iBAAiB,GACjB,iBAAiB,GACjB,gBAAgB,GAChB,eAAe,GACf,kBAAkB,GAClB,mBAAmB,GACnB,kBAAkB,GAClB,qBAAqB,GACrB,qBAAqB,GACrB,uBAAuB,GACvB,gBAAgB,GAChB,qBAAqB,GACrB,iBAAiB,CAAC;AAEtB,8EAA8E;AAC9E,MAAM,WAAW,aAAa;IAC5B,8DAA8D;IAC9D,IAAI,EAAE,MAAM,CAAC;IACb,6EAA6E;IAC7E,IAAI,EAAE,MAAM,CAAC;IACb,kCAAkC;IAClC,IAAI,EAAE,iBAAiB,CAAC;IACxB,kCAAkC;IAClC,OAAO,EAAE,MAAM,CAAC;IAChB,0CAA0C;IAC1C,IAAI,EAAE,MAAM,CAAC;CACd;AAED,sEAAsE;AACtE,MAAM,WAAW,UAAU;IACzB,iDAAiD;IACjD,IAAI,EAAE,MAAM,CAAC;IACb,mBAAmB;IACnB,IAAI,EAAE,MAAM,CAAC;CACd;AAED,4CAA4C;AAC5C,MAAM,WAAW,kBAAkB;IACjC;;;;;OAKG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;;;;OAIG;IACH,aAAa,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IAClC;;;;OAIG;IACH,YAAY,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IACjC;;;;OAIG;IACH,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B;;;;;OAKG;IACH,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B;;;;;OAKG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED;;;GAGG;AACH,eAAO,MAAM,oBAAoB,EAAE,SAAS,MAAM,EAIjD,CAAC"}

package/lib/deploy/core/types.js.map

@@ -1 +1 @@
-{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/deploy/core/types.ts"],"names":[],"mappings":"AA+EA;;;GAGG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAsB;IACrD,cAAc;IACd,sBAAsB;IACtB,0BAA0B;CAC3B,CAAC"}
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/deploy/core/types.ts"],"names":[],"mappings":"AAiFA;;;GAGG;AACH,MAAM,CAAC,MAAM,oBAAoB,GAAsB;IACrD,cAAc;IACd,sBAAsB;IACtB,0BAA0B;CAC3B,CAAC"}

package/lib/molecule3d/ui/Molecule3DToolbar.d.ts

@@ -9,20 +9,22 @@ import type { MeasurementKind } from '../core/measurement.ts';
 import type { Molecule3DTools } from '../core/settings.ts';
 /** Props of {@link Molecule3DToolbar}. */
 export interface Molecule3DToolbarProps {
-    tools: Molecule3DTools;
+    /** Which tools to show; every one it does not name is on. */
+    tools?: Partial<Molecule3DTools>;
     measureKind: MeasurementKind | null;
     onMeasureKindChange: (kind: MeasurementKind | null) => void;
     measurementCount: number;
     onClearMeasurements: () => void;
     spinning: boolean;
     onSpinningChange: (spinning: boolean) => void;
-    showSurface: boolean;
-    onShowSurfaceChange: (showSurface: boolean) => void;
+    /** Whether the molecular surface is drawn; its tool is left out without a handler. */
+    showSurface?: boolean;
+    onShowSurfaceChange?: (showSurface: boolean) => void;
     onResetView: () => void;
-    /** Content of the options popover. */
-    options: ReactElement;
-    /** Content of the export popover. */
-    exportPanel: ReactElement;
+    /** Content of the options popover; its tool is left out without one. */
+    options?: ReactElement;
+    /** Content of the export popover; its tool is left out without one. */
+    exportPanel?: ReactElement;
 }
 /**
  * The two toolbars; either is left out when none of its tools is on.

package/lib/molecule3d/ui/Molecule3DToolbar.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Molecule3DToolbar.d.ts","sourceRoot":"","sources":["../../../src/molecule3d/ui/Molecule3DToolbar.tsx"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAiB,YAAY,EAAE,MAAM,OAAO,CAAC;AAIzD,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AAM9D,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAS3D,0CAA0C;AAC1C,MAAM,WAAW,sBAAsB;IACrC,KAAK,EAAE,eAAe,CAAC;IACvB,WAAW,EAAE,eAAe,GAAG,IAAI,CAAC;IACpC,mBAAmB,EAAE,CAAC,IAAI,EAAE,eAAe,GAAG,IAAI,KAAK,IAAI,CAAC;IAC5D,gBAAgB,EAAE,MAAM,CAAC;IACzB,mBAAmB,EAAE,MAAM,IAAI,CAAC;IAChC,QAAQ,EAAE,OAAO,CAAC;IAClB,gBAAgB,EAAE,CAAC,QAAQ,EAAE,OAAO,KAAK,IAAI,CAAC;IAC9C,WAAW,EAAE,OAAO,CAAC;IACrB,mBAAmB,EAAE,CAAC,WAAW,EAAE,OAAO,KAAK,IAAI,CAAC;IACpD,WAAW,EAAE,MAAM,IAAI,CAAC;IACxB,sCAAsC;IACtC,OAAO,EAAE,YAAY,CAAC;IACtB,qCAAqC;IACrC,WAAW,EAAE,YAAY,CAAC;CAC3B;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,sBAAsB,GAAG,YAAY,CA2I7E"}
+{"version":3,"file":"Molecule3DToolbar.d.ts","sourceRoot":"","sources":["../../../src/molecule3d/ui/Molecule3DToolbar.tsx"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,KAAK,EAAiB,YAAY,EAAE,MAAM,OAAO,CAAC;AAIzD,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,wBAAwB,CAAC;AAM9D,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAU3D,0CAA0C;AAC1C,MAAM,WAAW,sBAAsB;IACrC,6DAA6D;IAC7D,KAAK,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC,CAAC;IACjC,WAAW,EAAE,eAAe,GAAG,IAAI,CAAC;IACpC,mBAAmB,EAAE,CAAC,IAAI,EAAE,eAAe,GAAG,IAAI,KAAK,IAAI,CAAC;IAC5D,gBAAgB,EAAE,MAAM,CAAC;IACzB,mBAAmB,EAAE,MAAM,IAAI,CAAC;IAChC,QAAQ,EAAE,OAAO,CAAC;IAClB,gBAAgB,EAAE,CAAC,QAAQ,EAAE,OAAO,KAAK,IAAI,CAAC;IAC9C,sFAAsF;IACtF,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,mBAAmB,CAAC,EAAE,CAAC,WAAW,EAAE,OAAO,KAAK,IAAI,CAAC;IACrD,WAAW,EAAE,MAAM,IAAI,CAAC;IACxB,wEAAwE;IACxE,OAAO,CAAC,EAAE,YAAY,CAAC;IACvB,uEAAuE;IACvE,WAAW,CAAC,EAAE,YAAY,CAAC;CAC5B;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,sBAAsB,GAAG,YAAY,CA+I7E"}

package/lib/molecule3d/ui/Molecule3DToolbar.js

@@ -9,6 +9,7 @@ import { Card } from '@blueprintjs/core';
 import { Toolbar } from 'react-science/ui';
 import { useChromeT } from "../../i18n/ui/useT.js";
 import { MEASUREMENT_ATOM_COUNTS, MEASUREMENT_KINDS, MEASUREMENT_LABELS, } from "../core/measurement.js";
+import { resolveMolecule3DTools } from "../core/settings.js";
 import { Molecule3DHelp } from "./Molecule3DHelp.js";
 import { ClearMeasurementsIcon, MeasureIcon, SurfaceIcon, } from "./molecule3dIcons.js";
 /**
@@ -17,24 +18,28 @@ import { ClearMeasurementsIcon, MeasureIcon, SurfaceIcon, } from "./molecule3dIc
  * @returns The toolbars, stacked.
  */
 export function Molecule3DToolbar(props) {
-    const { tools, measureKind, onMeasureKindChange, measurementCount, onClearMeasurements, spinning, onSpinningChange, showSurface, onShowSurfaceChange, onResetView, options, exportPanel, } = props;
+    const { tools: toolsProp, measureKind, onMeasureKindChange, measurementCount, onClearMeasurements, spinning, onSpinningChange, showSurface, onShowSurfaceChange, onResetView, options, exportPanel, } = props;
     const t = useChromeT();
+    const tools = resolveMolecule3DTools(toolsProp);
+    const showOptions = tools.options && options !== undefined;
+    const showSurfaceTool = tools.surface && onShowSurfaceChange !== undefined;
+    const showExport = tools.export && exportPanel !== undefined;
     const hasView = tools.spin ||
         tools.surface ||
         tools.reset ||
-        tools.options ||
-        tools.export ||
+        showOptions ||
+        showExport ||
         tools.help;
-    return (_jsxs("div", { style: COLUMN_STYLE, children: [hasView && (_jsx(Card, { elevation: 1, style: CARD_STYLE, children: _jsxs(Toolbar, { vertical: true, "aria-label": t('molecule3d.view'), children: [tools.reset && (_jsx(Toolbar.Item, { icon: "zoom-to-fit", "aria-label": t('molecule3d.resetView'), tooltip: t('molecule3d.resetView'), tooltipProps: TOOLTIP_PROPS, onClick: onResetView })), tools.spin && (_jsx(Toolbar.Item, { icon: "refresh", active: spinning, "aria-label": t('molecule3d.spin'), tooltip: t('molecule3d.spin'), tooltipProps: TOOLTIP_PROPS, onClick: () => {
+    return (_jsxs("div", { className: "no-print", style: COLUMN_STYLE, children: [hasView && (_jsx(Card, { elevation: 1, style: CARD_STYLE, children: _jsxs(Toolbar, { vertical: true, "aria-label": t('molecule3d.view'), children: [tools.reset && (_jsx(Toolbar.Item, { icon: "zoom-to-fit", "aria-label": t('molecule3d.resetView'), tooltip: t('molecule3d.resetView'), tooltipProps: TOOLTIP_PROPS, onClick: onResetView })), tools.spin && (_jsx(Toolbar.Item, { icon: "refresh", active: spinning, "aria-label": t('molecule3d.spin'), tooltip: t('molecule3d.spin'), tooltipProps: TOOLTIP_PROPS, onClick: () => {
                                 onSpinningChange(!spinning);
-                            } })), tools.surface && (_jsx(Toolbar.Item, { icon: _jsx(SurfaceIcon, {}), active: showSurface, "aria-label": t('molecule3d.surface'), tooltip: t('molecule3d.molecularSurface'), tooltipProps: TOOLTIP_PROPS, onClick: () => {
-                                onShowSurfaceChange(!showSurface);
-                            } })), tools.options && (_jsx(Toolbar.PopoverItem, { placement: "right-start", content: options, itemProps: {
+                            } })), showSurfaceTool && (_jsx(Toolbar.Item, { icon: _jsx(SurfaceIcon, {}), active: showSurface ?? false, "aria-label": t('molecule3d.surface'), tooltip: t('molecule3d.molecularSurface'), tooltipProps: TOOLTIP_PROPS, onClick: () => {
+                                onShowSurfaceChange(showSurface !== true);
+                            } })), showOptions && (_jsx(Toolbar.PopoverItem, { placement: "right-start", content: options, itemProps: {
                                 icon: 'cog',
                                 'aria-label': t('molecule3d.displayOptions'),
                                 tooltip: t('molecule3d.displayOptions'),
                                 tooltipProps: TOOLTIP_PROPS,
-                            } })), tools.export && (_jsx(Toolbar.PopoverItem, { placement: "right-start", content: exportPanel, itemProps: {
+                            } })), showExport && (_jsx(Toolbar.PopoverItem, { placement: "right-start", content: exportPanel, itemProps: {
                                 icon: 'download',
                                 'aria-label': t('molecule3d.exportImage'),
                                 tooltip: t('molecule3d.exportImage'),

package/lib/molecule3d/ui/Molecule3DToolbar.js.map

@@ -1 +1 @@
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package/lib/molecule3d/ui/MoleculeCanvas3D.js

@@ -1,10 +1,10 @@
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 import { useEffect, useRef, useState } from 'react';
+import { DEFAULT_SPIN_SPEED } from "../../molstar/core/index.js";
 import { normalizeMolecule3DSettings, resolveMolecule3DTools, } from "../core/settings.js";
 import { Molecule3DExport } from "./Molecule3DExport.js";
 import { Molecule3DOptions } from "./Molecule3DOptions.js";
 import { Molecule3DToolbar } from "./Molecule3DToolbar.js";
-import { DEFAULT_SPIN_SPEED } from "./camera.js";
 import { createMolecule3DViewer } from "./createViewer.js";
 import { useControlledState } from "./useControlledState.js";
 import { useImageExport } from "./useImageExport.js";

package/lib/molecule3d/ui/MoleculeCanvas3D.js.map

@@ -1 +1 @@
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package/lib/molecule3d/ui/camera.d.ts

@@ -6,10 +6,6 @@
  */
 import type { PluginContext } from 'molstar/lib/mol-plugin/context.js';
 import type { Molecule3DCamera } from '../core/camera.ts';
-/** Transition length used when the caller does not pick one, milliseconds. */
-export declare const DEFAULT_CAMERA_DURATION = 250;
-/** Turn rate used when the caller does not pick one, in molstar's spin unit. */
-export declare const DEFAULT_SPIN_SPEED: number;
 /**
  * Frame everything currently in the scene.
  *
@@ -24,13 +20,6 @@ export declare const DEFAULT_SPIN_SPEED: number;
  * direction.
  */
 export declare function resetCamera(plugin: PluginContext, durationMilliseconds?: number, fromFront?: boolean): void;
-/**
- * Turn the automatic spin on or off.
- * @param plugin - The molstar context.
- * @param spinning - Whether the scene should keep turning.
- * @param speed - Turn rate, in molstar's own spin unit.
- */
-export declare function setSpin(plugin: PluginContext, spinning: boolean, speed?: number): void;
 /**
  * Where the camera stands, against the scene rather than its coordinates.
  *

package/lib/molecule3d/ui/camera.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"camera.d.ts","sourceRoot":"","sources":["../../../src/molecule3d/ui/camera.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAIH,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,mCAAmC,CAAC;AAQvE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAM1D;;;;;;;;;;;;GAYG;AACH,wBAAgB,WAAW,CACzB,MAAM,EAAE,aAAa,EACrB,oBAAoB,SAA0B,EAC9C,SAAS,UAAQ,GAChB,IAAI,CAWN;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,UAAU,CAAC,MAAM,EAAE,aAAa,GAAG,gBAAgB,GAAG,IAAI,CAYzE;AAED;;;;;;;;;GASG;AACH,wBAAgB,WAAW,CACzB,MAAM,EAAE,aAAa,EACrB,MAAM,EAAE,gBAAgB,EACxB,oBAAoB,SAAI,GACvB,IAAI,CAeN;AAED;;;;;GAKG;AACH,wBAAgB,WAAW,CACzB,MAAM,EAAE,aAAa,EACrB,QAAQ,EAAE,CAAC,MAAM,EAAE,gBAAgB,GAAG,IAAI,KAAK,IAAI,GAClD,MAAM,IAAI,CASZ"}

package/lib/molecule3d/ui/camera.js

@@ -4,41 +4,11 @@
  * directions between molstar's camera and the scene-relative camera a link
  * carries.
  */
-import { Quat, Vec3 } from 'molstar/lib/mol-math/linear-algebra.js';
-import { normalizeMolecule3DCamera } from "../core/camera.js";
-/** Transition length used when the caller does not pick one, milliseconds. */
-export const DEFAULT_CAMERA_DURATION = 250;
-/** Turn rate used when the caller does not pick one, in molstar's spin unit. */
-export const DEFAULT_SPIN_SPEED = 1 / 3;
-/**
- * Fraction of the bounding sphere kept as breathing room around the model.
- *
- * `camera.reset()` frames the scene with molstar's own margin, which suits a
- * protein filling a wide viewport and leaves a small molecule a speck in the
- * middle. Framing the visible bounding sphere directly is what makes a single
- * ethanol legible.
- */
-const FRAMING_MARGIN = 0.08;
-/** Axis the automatic spin turns about: screen up. */
-const SPIN_AXIS = Vec3.create(0, 1, 0);
-/** Smallest radius framed, in ångström, so a single atom is not a close-up. */
-const MIN_FRAMING_RADIUS = 0.5;
+import { Vec3 } from 'molstar/lib/mol-math/linear-algebra.js';
+import { DEFAULT_CAMERA_DURATION, cameraToPose, framedRadius, poseToCamera, } from "../../molstar/core/index.js";
 /** Screen up and viewing direction when the model is seen as its file lays it. */
 const FRONT_UP = Vec3.create(0, 1, 0);
 const FRONT_DIRECTION = Vec3.create(0, 0, -1);
-/** The camera's own axes, which the stored rotation turns into world ones. */
-const CAMERA_UP = Vec3.create(0, 1, 0);
-const CAMERA_BACK = Vec3.create(0, 0, 1);
-/**
- * The radius a reset frames, which is the length every stored camera is
- * measured against — so reading a camera and applying it are the same move in
- * opposite directions.
- * @param radius - Radius of the scene's visible bounding sphere.
- * @returns The framed radius.
- */
-function framedRadius(radius) {
-    return Math.max(radius * (1 + FRAMING_MARGIN), MIN_FRAMING_RADIUS);
-}
 /**
  * Frame everything currently in the scene.
  *
@@ -64,21 +34,6 @@ export function resetCamera(plugin, durationMilliseconds = DEFAULT_CAMERA_DURATI
         },
     });
 }
-/**
- * Turn the automatic spin on or off.
- * @param plugin - The molstar context.
- * @param spinning - Whether the scene should keep turning.
- * @param speed - Turn rate, in molstar's own spin unit.
- */
-export function setSpin(plugin, spinning, speed = DEFAULT_SPIN_SPEED) {
-    plugin.canvas3d?.setProps({
-        trackball: {
-            animate: spinning
-                ? { name: 'spin', params: { speed, axis: SPIN_AXIS } }
-                : { name: 'off', params: {} },
-        },
-    });
-}
 /**
  * Where the camera stands, against the scene rather than its coordinates.
  *
@@ -99,31 +54,7 @@ export function readCamera(plugin) {
         return null;
     const framed = framedRadius(radius);
     const camera = canvas.camera;
-    const { position, target, up } = camera.getSnapshot();
-    const back = Vec3.sub(Vec3.zero(), position, target);
-    const distance = Vec3.magnitude(back);
-    if (distance <= 0)
-        return null;
-    Vec3.scale(back, back, 1 / distance);
-    // The trackball keeps up and back close to square, never exactly so.
-    const trueUp = Vec3.scaleAndAdd(Vec3.zero(), up, back, -Vec3.dot(up, back));
-    if (Vec3.magnitude(trueUp) <= 0)
-        return null;
-    Vec3.normalize(trueUp, trueUp);
-    const right = Vec3.cross(Vec3.zero(), trueUp, back);
-    const rotation = Quat.fromBasis(Quat.identity(), right, trueUp, back);
-    const offset = Vec3.sub(Vec3.zero(), target, center);
-    Vec3.scale(offset, offset, 1 / framed);
-    return normalizeMolecule3DCamera({
-        rotation: [
-            rotation[0] ?? 0,
-            rotation[1] ?? 0,
-            rotation[2] ?? 0,
-            rotation[3] ?? 1,
-        ],
-        zoom: camera.getTargetDistance(framed) / distance,
-        offset: [offset[0] ?? 0, offset[1] ?? 0, offset[2] ?? 0],
-    });
+    return poseToCamera(camera.getSnapshot(), { center, radius: framed }, camera.getTargetDistance(framed));
 }
 /**
  * Put the camera back where a link says it stood.
@@ -136,19 +67,14 @@ export function readCamera(plugin) {
  * @param durationMilliseconds - Transition length. Pass 0 for an instant jump.
  */
 export function applyCamera(plugin, camera, durationMilliseconds = 0) {
-    const { rotation, zoom, offset } = normalizeMolecule3DCamera(camera);
-    const turn = Quat.create(rotation[0], rotation[1], rotation[2], rotation[3]);
     plugin.canvas3d?.requestCameraReset({
         durationMs: durationMilliseconds,
         snapshot: (scene, current) => {
             const { center, radius } = scene.boundingSphereVisible;
             const framed = framedRadius(radius);
-            const up = Vec3.transformQuat(Vec3.zero(), CAMERA_UP, turn);
-            const back = Vec3.transformQuat(Vec3.zero(), CAMERA_BACK, turn);
-            const target = Vec3.create((center[0] ?? 0) + offset[0] * framed, (center[1] ?? 0) + offset[1] * framed, (center[2] ?? 0) + offset[2] * framed);
-            const distance = current.getTargetDistance(framed) / zoom;
-            const position = Vec3.scaleAndAdd(Vec3.zero(), target, back, distance);
-            return { target, position, up, radius: framed };
+            const reference = { center, radius: framed };
+            const pose = cameraToPose(camera, reference, current.getTargetDistance(framed));
+            return { ...pose, radius: framed };
         },
     });
 }

package/lib/molecule3d/ui/camera.js.map

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