react-cheminfo 0.21.0 → 0.23.0

package/README.md

@@ -71,7 +71,7 @@ through a wildcard subpath exactly as `react-science` serves its own.
 | **Routing & head**         | `createTabRouter`, `readRoute`, `writeRoute`, `subscribeToRoute`, `adoptLegacyHashAddress`, `writeDocumentMeta`                                                                                                                                         | `useTabRoute`                                                                                                                                                                           |
 | **Indexing**               | `injectPageMeta`, `pageHeadTags`, `pageDocumentMeta`, `fill`, `PAGE_HEAD_MARKER`, `PAGE_BODY_MARKER`, `robotsTxt`, `sitemapXml`, `noscriptIndex`, `structuredDataScript`, `assertRoutes`, `routeFor`, `homeRoute`                                       | `cheminfoPrerender`, `ogCardHtml`, `OG_WIDTH`, `OG_HEIGHT` (all `/vite`)                                                                                                                |
 | **Pedagogy**               | `parseGlossaryMarkers`, `localStorageProgressStore`, `progressSummary`, `finishValidation`                                                                                                                                                              | `GlossaryText`, `SyntaxTooltip`, `HintLadder`, `ExerciseActions`, `ExerciseProgressHeader`, `TutorialStepStrip`, `ReferenceGrid`, `TestCaseList`                                        |
-| **Clipboard & files**      | `writeToClipboard`, `downloadBlob`, `downloadText`, `sanitizeFileName`, `toDelimited`, `readDelimited`, `downloadFigure`, `figureSvg`, `figurePng`, `figureSize`                                                                                        | `CopyButton`, `CodeBlock`, `DelimitedTextDialog`, `FigureDownload`                                                                                                                      |
+| **Clipboard & files**      | `writeToClipboard`, `downloadBlob`, `downloadText`, `sanitizeFileName`, `toDelimited`, `readDelimited`, `downloadFigure`, `figureSvg`, `figurePng`, `figureSize`                                                                                        | `ClickToCopy`, `CopyButton`, `CopyableValue`, `CodeBlock`, `DelimitedTextDialog`, `FigureDownload`                                                                                      |
 | **Formatting & colour**    | `formatInteger`, `formatDecimal`, `formatBytes`, `pluralize`, `readableInk`, `contrastRatio`, `COLOR_SCALES`, `resolveColorScale`, `formatColorScale`, `colorAt`, `swatchAt`, `sampleScale`, `colorScaleGradient`, `rgbToHsv`                           | `ColorScaleLegend`, `ColorScaleSelect`, `ColorScaleEditor`, `ColorScaleBar`                                                                                                             |
 | **Widgets**                | `CREDITS`, `credits`                                                                                                                                                                                                                                    | `ErrorBoundary`, `CollapsibleSection`, `CapsuleFilter`, `HelpTooltip`, `CreditsList`                                                                                                    |
 | **Hooks & state**          | `createWorkerChannel`, `persistBucket`, `persistSignalBucket`                                                                                                                                                                                           | `useDebouncedValue`, `useContainerSize`, `useListKeyboardNavigation`, `useDisclosure`                                                                                                   |
@@ -82,7 +82,7 @@ through a wildcard subpath exactly as `react-science` serves its own.
 | **Slideshows**             | `parseTalk`, `splitDemoLinks`, `slideActionForKey`, `parseTalkOrigin`, `buildTalkManifest` (all `/slides`)                                                                                                                                              | `Slideshow`, `SlideView`, `TalkList`, `BackToSlides` (all `/slides`), `cheminfoTalks` (`/vite`)                                                                                         |
 | **Token guard**            | `findTokenViolations`                                                                                                                                                                                                                                   | `cheminfo-check-tokens` (the bin)                                                                                                                                                       |
 | **Figures**                | `chartScale`, `chartAxisScale`, `chartAxisTitle`, `chartShare`, `chartColumnExtent`, `chartBinCounts`, `chartSeriesColor`, `rowMatrix`, `stackedMatrix`, `emptiestCorner`, `placeOverlayCard`, `overlayMetrics`                                         | `ChartFrame`, `ChartAxis`, `TrackedLineChart`, `OverlayBar`, `OverlaySelect`, `OverlaySegmented`, `OverlayToggle`, `OverlayNumber`, `OverlayLegend`, `OverlayCaption`, `OverlayReadout` |
-| **Projections**            | `pcaResult`, `embeddingResult`, `projectionTabs`, `loadingProfiles`, `explainedShares`, `confidenceEllipse`, `projectEllipse`, `pointsInPolygon`, `resolveProjectionGroups`, `PROJECTION_COPY`                                                          | `PcaViewer`, `ProjectionViewer`, `ScatterPlot`, `ScatterMatrix`                                                                                                                         |
+| **Projections**            | `pcaResult`, `embeddingResult`, `projectionTabs`, `loadingProfiles`, `explainedShares`, `confidenceEllipse`, `projectEllipse`, `pointsInPolygon`, `resolveProjectionGroups`, `resolveProjectionShapes`, `PROJECTION_COPY`                               | `PcaViewer`, `ProjectionViewer`, `ScatterPlot`, `ScatterMatrix`                                                                                                                         |
 | **Parallel coordinates**   | `parallelAxisOf`, `parallelAxisLayouts`, `parallelIncludedMask`, `parallelKeptCount`, `parallelNearestRow`, `parallelSegmentAt`, `parallelBandAt`, `parallelRangeOf`, `parallelPalette`, `parallelColorSteps`, `paintParallelLines`                     | `ParallelCoordinates`                                                                                                                                                                   |
 | **Periodic table**         | `PERIODIC_ELEMENTS`, `elementBySymbol`, `elementByAtomicNumber`, `cellOf`, `placedElements`, `elementByArrowKey`, `categorySwatch`, `CATEGORY_LABELS`                                                                                                   | `PeriodicTable`, `ElementCell`, `CategoryLegend`                                                                                                                                        |
 
@@ -390,8 +390,11 @@ const pca = new PCA(rows, { scale: true });
   }}
   samples={{
     ids,
-    groups: species,
-    groupLabel: 'Species',
+    labels: names, // what the card and the map write; `ids` stay the keys
+    groupings: [
+      { id: 'species', label: 'Species', groups: species }, // colours the dots
+      { id: 'cluster', label: 'Cluster', groups: clusters }, // shapes them
+    ],
     fields: (index) => [
       { label: 'Sepal length', value: `${rows[index][0]} cm` },
     ],
@@ -427,6 +430,13 @@ const pca = new PCA(rows, { scale: true });
   sample helped choose where the axes point and is bound to land somewhere
   reasonable, while a projected one can land anywhere — and landing far out is
   the finding, not a fault.
+- **Two groupings of the same samples, on one picture.** `samples.groupings` is a
+  list: the first colours the dots and the second shapes them, and the reader
+  can give either to any grouping from the bar and the cog. A grouping of more
+  groups than there are shapes is refused as a whole rather than drawn with two
+  groups under one mark, and the hover card names every grouping. It is what a
+  clustering is read with: the clusters it found in colour, the classes you gave
+  as shapes.
 - **Colour means one thing per tab and the legend says which.** Groups on the map
   and the pair grid, components on the other two, drawn from two orders of the
   Okabe–Ito palette that are disjoint over their first four, so blue-is-setosa on

package/lib/build/vite/gitHead.d.ts.map

@@ -1 +1 @@
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package/lib/build/vite/gitHead.js

@@ -27,10 +27,13 @@ export function readGitHead(start) {
     // itself and neither `refs` nor `packed-refs` is read at all.
     if (!head.startsWith('ref:'))
         return asCommit(head);
+    // A linked worktree keeps only its own `HEAD`: the branch it names lives in
+    // the repository's common directory, which `commondir` points to.
     const ref = head.slice('ref:'.length).trim();
-    const loose = readText(join(gitDir, ref));
+    const commonDir = findCommonDir(gitDir);
+    const loose = readText(join(gitDir, ref)) ?? readText(join(commonDir, ref));
     return (asCommit(loose) ??
-        commitInPackedRefs(readText(join(gitDir, 'packed-refs')), ref));
+        commitInPackedRefs(readText(join(commonDir, 'packed-refs')), ref));
 }
 /**
  * The commit named by the environment, for a build that cannot see `.git`.
@@ -65,6 +68,18 @@ export function findGitDir(start) {
         directory = parent;
     }
 }
+/**
+ * The directory the refs of a repository live in: the `.git` directory itself,
+ * or for a linked worktree the one its `commondir` file names.
+ * @param gitDir - The `.git` directory `HEAD` was read from.
+ * @returns The absolute path of the common directory.
+ */
+function findCommonDir(gitDir) {
+    const pointer = readText(join(gitDir, 'commondir'));
+    if (pointer === undefined || pointer === '')
+        return gitDir;
+    return isAbsolute(pointer) ? pointer : resolve(gitDir, pointer);
+}
 /**
  * The hash a packed `refs` file gives a ref.
  * @param packed - The contents of `packed-refs`, when there is one.

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package/lib/clipboard/ui/ClickToCopy.d.ts

@@ -0,0 +1,69 @@
+import type { CSSProperties, ReactElement, ReactNode } from 'react';
+import type { ClipboardContent } from '../core/writeToClipboard.ts';
+/** The elements a {@link ClickToCopy} can be, so a table cell is its own target. */
+export type ClickToCopyElement = 'span' | 'code' | 'div' | 'td' | 'th';
+/** What {@link ClickToCopy} copies, and how it reads. */
+export interface ClickToCopyProps {
+    /**
+     * What goes on the clipboard: text, or text with its HTML rendering. A
+     * function is called only when the value is clicked.
+     */
+    value: ClipboardContent | (() => ClipboardContent);
+    /** What is shown; the pointer turns into the copy cursor over it. */
+    children: ReactNode;
+    /**
+     * What the value is, named in the hover title: `Copy the SMILES (C=CC=O)`.
+     * @default undefined — the title names only the value
+     */
+    label?: string;
+    /**
+     * Hover title, replacing the one built from `label` and the value.
+     * @default undefined
+     */
+    title?: string;
+    /**
+     * The element drawn. A `span` or a `code` sits in a line of text and shows
+     * its glyph past its right edge; a `div`, `td` or `th` keeps room for it
+     * inside. A `td` or `th` keeps its cell role, so a table stays a table to a
+     * screen reader. A list item or a paragraph holds a `span` or a `div`
+     * instead, so it stays a list item or a paragraph.
+     * @default 'span'
+     */
+    as?: ClickToCopyElement;
+    /**
+     * Whether the value is a tab stop and a button of its own, with its glyph.
+     * Off when a copy button beside it already copies the same value, so the
+     * keyboard and a screen reader meet one control, and the eye one glyph.
+     * @default true
+     */
+    focusable?: boolean;
+    /**
+     * Whether there is nothing to copy: the children are drawn as plain content.
+     * @default false
+     */
+    disabled?: boolean;
+    /**
+     * Class the element carries, in addition to `click-to-copy`.
+     * @default undefined
+     */
+    className?: string;
+    /**
+     * Inline style of the element.
+     * @default undefined
+     */
+    style?: CSSProperties;
+}
+/**
+ * A value that is copied by clicking it.
+ *
+ * Text in a tool is not selectable — a drag across a viewer must not paint the
+ * page — so what is worth taking away is copied this way instead: the copy
+ * cursor, a tint and a clipboard glyph announce it on hover, a click or `Enter`
+ * puts it on the clipboard, and a tick confirms it. The click stops there, so
+ * a value inside a clickable row copies without also opening the row, and a
+ * link or a button nested in the value keeps its own click.
+ * @param props - See {@link ClickToCopyProps}.
+ * @returns The copyable value.
+ */
+export declare function ClickToCopy(props: ClickToCopyProps): ReactElement;
+//# sourceMappingURL=ClickToCopy.d.ts.map

package/lib/clipboard/ui/ClickToCopy.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"ClickToCopy.d.ts","sourceRoot":"","sources":["../../../src/clipboard/ui/ClickToCopy.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,EACV,aAAa,EAGb,YAAY,EACZ,SAAS,EACV,MAAM,OAAO,CAAC;AAIf,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,6BAA6B,CAAC;AAKpE,oFAAoF;AACpF,MAAM,MAAM,kBAAkB,GAAG,MAAM,GAAG,MAAM,GAAG,KAAK,GAAG,IAAI,GAAG,IAAI,CAAC;AAEvE,yDAAyD;AACzD,MAAM,WAAW,gBAAgB;IAC/B;;;OAGG;IACH,KAAK,EAAE,gBAAgB,GAAG,CAAC,MAAM,gBAAgB,CAAC,CAAC;IACnD,qEAAqE;IACrE,QAAQ,EAAE,SAAS,CAAC;IACpB;;;OAGG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;;;OAGG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IACf;;;;;;;OAOG;IACH,EAAE,CAAC,EAAE,kBAAkB,CAAC;IACxB;;;;;OAKG;IACH,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB;;;OAGG;IACH,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;;;OAGG;IACH,KAAK,CAAC,EAAE,aAAa,CAAC;CACvB;AAYD;;;;;;;;;;;GAWG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,gBAAgB,GAAG,YAAY,CAwEjE"}

package/lib/clipboard/ui/ClickToCopy.js

@@ -0,0 +1,66 @@
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { Icon } from '@blueprintjs/core';
+import { onActivateKey } from "../../hooks/ui/activationKey.js";
+import { joinClassNames } from "../../shared/ui/joinClassNames.js";
+import { writeToClipboard } from "../core/writeToClipboard.js";
+import { useCopyToClipboard } from "./useCopyToClipboard.js";
+/** Past this length the value is left out of the title: a molfile is no tooltip. */
+const TITLE_VALUE_MAX = 120;
+const INLINE = new Set(['span', 'code']);
+const CELLS = new Set(['td', 'th']);
+/** A control inside the value acts on its own click, which copies nothing. */
+const NESTED_CONTROL = 'a[href], button, input, select, textarea, summary, label, [role="button"], [role="link"], [role="checkbox"], [role="switch"], [role="tab"], [role="menuitem"]';
+/**
+ * A value that is copied by clicking it.
+ *
+ * Text in a tool is not selectable — a drag across a viewer must not paint the
+ * page — so what is worth taking away is copied this way instead: the copy
+ * cursor, a tint and a clipboard glyph announce it on hover, a click or `Enter`
+ * puts it on the clipboard, and a tick confirms it. The click stops there, so
+ * a value inside a clickable row copies without also opening the row, and a
+ * link or a button nested in the value keeps its own click.
+ * @param props - See {@link ClickToCopyProps}.
+ * @returns The copyable value.
+ */
+export function ClickToCopy(props) {
+    const { value, children, label, title, as: Element = 'span', focusable = true, disabled = false, className, style, } = props;
+    const { copied, failed, copy } = useCopyToClipboard();
+    if (disabled) {
+        return (_jsx(Element, { className: className, style: style, children: children }));
+    }
+    function activate(event) {
+        if (isOnNestedControl(event))
+            return;
+        event.stopPropagation();
+        void copy(typeof value === 'function' ? () => writeToClipboard(value()) : value);
+    }
+    const outcome = copied ? 'copied' : failed ? 'failed' : undefined;
+    return (_jsxs(Element, { className: joinClassNames('click-to-copy', INLINE.has(Element) ? 'click-to-copy--inline' : 'click-to-copy--block', className), style: style, role: focusable && !CELLS.has(Element) ? 'button' : undefined, tabIndex: focusable ? 0 : undefined, title: title ?? copyTitle(value, label), "data-copy": outcome, onClick: activate, onKeyDown: onActivateKey(activate), children: [children, focusable ? (_jsx(Icon, { className: "click-to-copy__icon", icon: outcome === 'copied'
+                    ? 'tick'
+                    : outcome === 'failed'
+                        ? 'cross'
+                        : 'clipboard', size: 16 })) : null, _jsx("span", { className: "click-to-copy__status", role: "status", children: outcome === 'copied'
+                    ? 'Copied'
+                    : outcome === 'failed'
+                        ? 'Copy failed'
+                        : null })] }));
+}
+function isOnNestedControl(event) {
+    const { target, currentTarget } = event;
+    if (!(target instanceof Element) || target === currentTarget)
+        return false;
+    const control = target.closest(NESTED_CONTROL);
+    return (control !== null &&
+        control !== currentTarget &&
+        currentTarget.contains(control));
+}
+function copyTitle(value, label) {
+    const what = label === undefined ? 'Copy' : `Copy the ${label}`;
+    if (typeof value === 'function')
+        return what;
+    const text = typeof value === 'string' ? value : value.text;
+    if (text === '' || text.length > TITLE_VALUE_MAX)
+        return what;
+    return label === undefined ? `Copy ${text}` : `${what} (${text})`;
+}
+//# sourceMappingURL=ClickToCopy.js.map

package/lib/clipboard/ui/ClickToCopy.js.map

@@ -0,0 +1 @@
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package/lib/clipboard/ui/CopyButton.d.ts

@@ -37,7 +37,7 @@ export interface CopyButtonProps {
     small?: boolean;
     /**
      * Glyph shown at rest. A tick replaces it while the copy is confirmed.
-     * @default 'duplicate'
+     * @default 'clipboard'
      */
     icon?: IconName;
     /**

package/lib/clipboard/ui/CopyButton.js

@@ -8,7 +8,7 @@ import { DEFAULT_COPY_RESET_AFTER, useCopyToClipboard, } from "./useCopyToClipbo
  * @returns The copy button.
  */
 export function CopyButton(props) {
-    const { content, label, copiedLabel = 'Copied', failedLabel = 'Copy failed', minimal = false, small = false, icon = 'duplicate', disabled = false, resetAfter = DEFAULT_COPY_RESET_AFTER, title = 'Copy to clipboard', className, } = props;
+    const { content, label, copiedLabel = 'Copied', failedLabel = 'Copy failed', minimal = false, small = false, icon = 'clipboard', disabled = false, resetAfter = DEFAULT_COPY_RESET_AFTER, title = 'Copy to clipboard', className, } = props;
     const { copied, failed, copy } = useCopyToClipboard(resetAfter);
     const look = buttonLook({
         copied,

package/lib/clipboard/ui/CopyableValue.d.ts

@@ -41,9 +41,9 @@ export interface CopyableValueProps {
  * One read-only value, named, with the button that copies it.
  *
  * A derived notation — a SMILES, an InChIKey, an accession — is only useful
- * somewhere else, so it is shown with the single click that puts it on the
- * clipboard, and selecting the value by hand takes all of it at once. An empty
- * value reads as the missing marker and offers nothing to copy.
+ * somewhere else, so a click on the value or on its button puts it on the
+ * clipboard. An empty value reads as the missing marker and offers nothing to
+ * copy.
  * @param props - See {@link CopyableValueProps}.
  * @returns The labelled value and its copy button.
  */

package/lib/clipboard/ui/CopyableValue.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"CopyableValue.d.ts","sourceRoot":"","sources":["../../../src/clipboard/ui/CopyableValue.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAiB,YAAY,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAUpE,0DAA0D;AAC1D,MAAM,WAAW,kBAAkB;IACjC,4DAA4D;IAC5D,KAAK,EAAE,MAAM,CAAC;IACd,8DAA8D;IAC9D,KAAK,EAAE,MAAM,CAAC;IACd;;;OAGG;IACH,IAAI,CAAC,EAAE,MAAM,CAAC;IACd;;;;OAIG;IACH,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IAC5B;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB;;;OAGG;IACH,QAAQ,CAAC,EAAE,SAAS,CAAC;IACrB;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED;;;;;;;;;GASG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,kBAAkB,GAAG,YAAY,CAmDrE"}

package/lib/clipboard/ui/CopyableValue.js

@@ -1,15 +1,16 @@
 import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
 import { MISSING_VALUE } from "../../format/core/missing.js";
 import { TOKEN } from "../../tokens/core/familyTokens.js";
+import { ClickToCopy } from "./ClickToCopy.js";
 import { CopyButton } from "./CopyButton.js";
 const DEFAULT_BLOCK_HEIGHT = 160;
 /**
  * One read-only value, named, with the button that copies it.
  *
  * A derived notation — a SMILES, an InChIKey, an accession — is only useful
- * somewhere else, so it is shown with the single click that puts it on the
- * clipboard, and selecting the value by hand takes all of it at once. An empty
- * value reads as the missing marker and offers nothing to copy.
+ * somewhere else, so a click on the value or on its button puts it on the
+ * clipboard. An empty value reads as the missing marker and offers nothing to
+ * copy.
  * @param props - See {@link CopyableValueProps}.
  * @returns The labelled value and its copy button.
  */
@@ -18,7 +19,7 @@ export function CopyableValue(props) {
     const isEmpty = value === '';
     return (_jsxs("div", { className: className === undefined
             ? 'copyable-value'
-            : `copyable-value ${className}`, children: [_jsxs("div", { style: HEADER_STYLE, children: [_jsx("span", { className: "copyable-value__label", style: hint === undefined ? LABEL_STYLE : HINTED_LABEL_STYLE, title: hint, children: label }), _jsx(CopyButton, { content: value, title: copyTitle, disabled: isEmpty, minimal: true, small: true })] }), _jsx("code", { className: "copyable-value__value", style: block ? { ...BLOCK_VALUE_STYLE, maxHeight } : VALUE_STYLE, children: isEmpty ? MISSING_VALUE : value }), children] }));
+            : `copyable-value ${className}`, children: [_jsxs("div", { style: HEADER_STYLE, children: [_jsx("span", { className: "copyable-value__label", style: hint === undefined ? LABEL_STYLE : HINTED_LABEL_STYLE, title: hint, children: label }), _jsx(CopyButton, { content: value, title: copyTitle, disabled: isEmpty, minimal: true, small: true })] }), _jsx(ClickToCopy, { as: "code", value: value, label: label, focusable: false, disabled: isEmpty, className: "copyable-value__value", style: block ? { ...BLOCK_VALUE_STYLE, maxHeight } : VALUE_STYLE, children: isEmpty ? MISSING_VALUE : value }), children] }));
 }
 const HEADER_STYLE = {
     display: 'flex',
@@ -40,7 +41,6 @@ const VALUE_STYLE = {
     fontFamily: 'ui-monospace, SFMono-Regular, Menlo, monospace',
     fontSize: 12,
     overflowWrap: 'anywhere',
-    userSelect: 'all',
 };
 const BLOCK_VALUE_STYLE = {
     ...VALUE_STYLE,

package/lib/clipboard/ui/CopyableValue.js.map

@@ -1 +1 @@
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+{"version":3,"file":"CopyableValue.js","sourceRoot":"","sources":["../../../src/clipboard/ui/CopyableValue.tsx"],"names":[],"mappings":";AAEA,OAAO,EAAE,aAAa,EAAE,MAAM,8BAA8B,CAAC;AAC7D,OAAO,EAAE,KAAK,EAAE,MAAM,mCAAmC,CAAC;AAE1D,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAmB,CAAC;AAChD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAkB,CAAC;AAE9C,MAAM,oBAAoB,GAAG,GAAG,CAAC;AAyCjC;;;;;;;;;GASG;AACH,MAAM,UAAU,aAAa,CAAC,KAAyB;IACrD,MAAM,EACJ,KAAK,EACL,KAAK,EACL,IAAI,EACJ,KAAK,GAAG,KAAK,EACb,SAAS,GAAG,oBAAoB,EAChC,SAAS,GAAG,YAAY,KAAK,EAAE,EAC/B,QAAQ,EACR,SAAS,GACV,GAAG,KAAK,CAAC;IACV,MAAM,OAAO,GAAG,KAAK,KAAK,EAAE,CAAC;IAE7B,OAAO,CACL,eACE,SAAS,EACP,SAAS,KAAK,SAAS;YACrB,CAAC,CAAC,gBAAgB;YAClB,CAAC,CAAC,kBAAkB,SAAS,EAAE,aAGnC,eAAK,KAAK,EAAE,YAAY,aACtB,eACE,SAAS,EAAC,uBAAuB,EACjC,KAAK,EAAE,IAAI,KAAK,SAAS,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,kBAAkB,EAC5D,KAAK,EAAE,IAAI,YAEV,KAAK,GACD,EACP,KAAC,UAAU,IACT,OAAO,EAAE,KAAK,EACd,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,OAAO,EACjB,OAAO,QACP,KAAK,SACL,IACE,EACN,KAAC,WAAW,IACV,EAAE,EAAC,MAAM,EACT,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,KAAK,EACZ,SAAS,EAAE,KAAK,EAChB,QAAQ,EAAE,OAAO,EACjB,SAAS,EAAC,uBAAuB,EACjC,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC,EAAE,GAAG,iBAAiB,EAAE,SAAS,EAAE,CAAC,CAAC,CAAC,WAAW,YAE/D,OAAO,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,KAAK,GACpB,EACb,QAAQ,IACL,CACP,CAAC;AACJ,CAAC;AAED,MAAM,YAAY,GAAG;IACnB,OAAO,EAAE,MAAM;IACf,UAAU,EAAE,QAAQ;IACpB,cAAc,EAAE,eAAe;IAC/B,GAAG,EAAE,CAAC;CAC0B,CAAC;AAEnC,MAAM,WAAW,GAAG;IAClB,KAAK,EAAE,KAAK,CAAC,SAAS;IACtB,QAAQ,EAAE,EAAE;IACZ,UAAU,EAAE,GAAG;CACiB,CAAC;AAEnC,MAAM,kBAAkB,GAAG;IACzB,GAAG,WAAW;IACd,MAAM,EAAE,MAAM;CACkB,CAAC;AAEnC,MAAM,WAAW,GAAG;IAClB,OAAO,EAAE,OAAO;IAChB,UAAU,EAAE,gDAAgD;IAC5D,QAAQ,EAAE,EAAE;IACZ,YAAY,EAAE,UAAU;CACQ,CAAC;AAEnC,MAAM,iBAAiB,GAAG;IACxB,GAAG,WAAW;IACd,UAAU,EAAE,KAAK;IACjB,YAAY,EAAE,QAAQ;IACtB,QAAQ,EAAE,MAAM;CACgB,CAAC"}

package/lib/clipboard/ui/index.d.ts

@@ -1,3 +1,5 @@
+export type { ClickToCopyElement, ClickToCopyProps } from './ClickToCopy.tsx';
+export { ClickToCopy } from './ClickToCopy.tsx';
 export type { CodeBlockProps, CodeBlockTone } from './CodeBlock.tsx';
 export { CodeBlock } from './CodeBlock.tsx';
 export type { CopyableValueProps } from './CopyableValue.tsx';

package/lib/clipboard/ui/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/clipboard/ui/index.ts"],"names":[],"mappings":"AAAA,YAAY,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AACrE,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC5C,YAAY,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAC9D,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,YAAY,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC5E,OAAO,EACL,wBAAwB,EACxB,kBAAkB,GACnB,MAAM,yBAAyB,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/clipboard/ui/index.ts"],"names":[],"mappings":"AAAA,YAAY,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AAC9E,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,YAAY,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AACrE,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC5C,YAAY,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AAC9D,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AACpD,YAAY,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAC9C,YAAY,EAAE,WAAW,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC5E,OAAO,EACL,wBAAwB,EACxB,kBAAkB,GACnB,MAAM,yBAAyB,CAAC"}

package/lib/clipboard/ui/index.js

@@ -1,3 +1,4 @@
+export { ClickToCopy } from "./ClickToCopy.js";
 export { CodeBlock } from "./CodeBlock.js";
 export { CopyableValue } from "./CopyableValue.js";
 export { CopyButton } from "./CopyButton.js";

package/lib/clipboard/ui/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/clipboard/ui/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAiB,CAAC;AAE5C,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAqB,CAAC;AAEpD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAkB,CAAC;AAE9C,OAAO,EACL,wBAAwB,EACxB,kBAAkB,GACnB,MAAM,yBAAyB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/clipboard/ui/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,kBAAmB,CAAC;AAEhD,OAAO,EAAE,SAAS,EAAE,MAAM,gBAAiB,CAAC;AAE5C,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAqB,CAAC;AAEpD,OAAO,EAAE,UAAU,EAAE,MAAM,iBAAkB,CAAC;AAE9C,OAAO,EACL,wBAAwB,EACxB,kBAAkB,GACnB,MAAM,yBAAyB,CAAC"}

package/lib/ecosystem/core/groups.d.ts

@@ -4,11 +4,12 @@
  * A single grid of tiles tells a visitor nothing about which of them is for
  * a first-year student and which is for a research project. The groups are the
  * answer, and they read as a progression: the chemistry a course opens with,
- * then the molecule itself, then what was measured of it, then the work only a
- * project needs — and last the three tools that are not chemistry at all.
+ * the exercises that practise it, then the molecule itself, then what was
+ * measured of it, then the work only a project needs — and last the tools that
+ * are not chemistry at all.
  */
 /** The topics, in the order they are written. */
-export type SiteGroupId = 'basics' | 'structures' | 'spectra' | 'research' | 'computing';
+export type SiteGroupId = 'basics' | 'practice' | 'structures' | 'spectra' | 'research' | 'computing';
 /** One topic the family's tools are gathered under. */
 export interface SiteGroup {
     /** The identifier a site names in its `group`. */

package/lib/ecosystem/core/groups.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"groups.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/groups.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,iDAAiD;AACjD,MAAM,MAAM,WAAW,GACrB,QAAQ,GAAG,YAAY,GAAG,SAAS,GAAG,UAAU,GAAG,WAAW,CAAC;AAEjE,uDAAuD;AACvD,MAAM,WAAW,SAAS;IACxB,kDAAkD;IAClD,EAAE,EAAE,WAAW,CAAC;IAChB,8CAA8C;IAC9C,KAAK,EAAE,MAAM,CAAC;IACd;;;OAGG;IACH,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;GAIG;AACH,eAAO,MAAM,WAAW,EAAE,SAAS,SAAS,EA0B3C,CAAC"}
+{"version":3,"file":"groups.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/groups.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,iDAAiD;AACjD,MAAM,MAAM,WAAW,GACrB,QAAQ,GAAG,UAAU,GAAG,YAAY,GAAG,SAAS,GAAG,UAAU,GAAG,WAAW,CAAC;AAE9E,uDAAuD;AACvD,MAAM,WAAW,SAAS;IACxB,kDAAkD;IAClD,EAAE,EAAE,WAAW,CAAC;IAChB,8CAA8C;IAC9C,KAAK,EAAE,MAAM,CAAC;IACd;;;OAGG;IACH,KAAK,EAAE,MAAM,CAAC;CACf;AAED;;;;GAIG;AACH,eAAO,MAAM,WAAW,EAAE,SAAS,SAAS,EAgC3C,CAAC"}

package/lib/ecosystem/core/groups.js

@@ -4,8 +4,9 @@
  * A single grid of tiles tells a visitor nothing about which of them is for
  * a first-year student and which is for a research project. The groups are the
  * answer, and they read as a progression: the chemistry a course opens with,
- * then the molecule itself, then what was measured of it, then the work only a
- * project needs — and last the three tools that are not chemistry at all.
+ * the exercises that practise it, then the molecule itself, then what was
+ * measured of it, then the work only a project needs — and last the tools that
+ * are not chemistry at all.
  */
 /**
  * Every topic, in the order a menu and a footer write them. A site names one of
@@ -18,6 +19,11 @@ export const SITE_GROUPS = [
         label: 'Chemistry basics',
         blurb: 'Where a course starts, and what you go back to.',
     },
+    {
+        id: 'practice',
+        label: 'Practice',
+        blurb: 'Where a first course is worked through, one graded series at a time.',
+    },
     {
         id: 'structures',
         label: 'Structures & notation',

package/lib/ecosystem/core/groups.js.map

@@ -1 +1 @@
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+{"version":3,"file":"groups.js","sourceRoot":"","sources":["../../../src/ecosystem/core/groups.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAmBH;;;;GAIG;AACH,MAAM,CAAC,MAAM,WAAW,GAAyB;IAC/C;QACE,EAAE,EAAE,QAAQ;QACZ,KAAK,EAAE,kBAAkB;QACzB,KAAK,EAAE,iDAAiD;KACzD;IACD;QACE,EAAE,EAAE,UAAU;QACd,KAAK,EAAE,UAAU;QACjB,KAAK,EACH,sEAAsE;KACzE;IACD;QACE,EAAE,EAAE,YAAY;QAChB,KAAK,EAAE,uBAAuB;QAC9B,KAAK,EAAE,iEAAiE;KACzE;IACD;QACE,EAAE,EAAE,SAAS;QACb,KAAK,EAAE,SAAS;QAChB,KAAK,EAAE,kEAAkE;KAC1E;IACD;QACE,EAAE,EAAE,UAAU;QACd,KAAK,EAAE,iBAAiB;QACxB,KAAK,EAAE,iEAAiE;KACzE;IACD;QACE,EAAE,EAAE,WAAW;QACf,KAAK,EAAE,sBAAsB;QAC7B,KAAK,EAAE,6DAA6D;KACrE;CACF,CAAC"}

package/lib/ecosystem/core/sites.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sites.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/sites.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAE5D,YAAY,EACV,aAAa,EACb,MAAM,EACN,cAAc,EACd,QAAQ,EACR,UAAU,GACX,MAAM,YAAY,CAAC;AAEpB;;;GAGG;AACH,eAAO,MAAM,eAAe,EAAE,SAAS,aAAa,EAoRnD,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,OAAO,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,CAEhD"}
+{"version":3,"file":"sites.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/core/sites.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,YAAY,CAAC;AAE5D,YAAY,EACV,aAAa,EACb,MAAM,EACN,cAAc,EACd,QAAQ,EACR,UAAU,GACX,MAAM,YAAY,CAAC;AAEpB;;;GAGG;AACH,eAAO,MAAM,eAAe,EAAE,SAAS,aAAa,EA2TnD,CAAC;AAEF;;;;GAIG;AACH,wBAAgB,OAAO,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,CAEhD"}

package/lib/ecosystem/core/sites.js

@@ -278,6 +278,45 @@ export const ECOSYSTEM_SITES = [
         brandAlt: '#1d4ed8',
         mark: { plate: '#854d0e', accent: '#60a5fa' },
     },
+    {
+        id: 'atoms',
+        name: { lead: 'atoms', alt: 'cheminfo', dot: true },
+        host: 'atoms.cheminfo.org',
+        repository: 'https://github.com/cheminfo/atoms.cheminfo.org',
+        tagline: 'Electrons, neutrons, Lewis structures and oxidation states.',
+        group: 'practice',
+        brand: '#b91c1c',
+        // The sky the mark's electron is drawn in sits at 2.1:1 on white, so the
+        // second half of the wordmark takes this darkened form instead.
+        brandAlt: '#0369a1',
+        mark: { plate: '#b91c1c', accent: '#38bdf8' },
+    },
+    {
+        id: 'moles',
+        name: { lead: 'moles', alt: 'cheminfo', dot: true },
+        host: 'moles.cheminfo.org',
+        repository: 'https://github.com/cheminfo/moles.cheminfo.org',
+        tagline: 'Balance a reaction, and work out its mass composition.',
+        group: 'practice',
+        brand: '#334155',
+        // The amber the mark's loaded pan is drawn in sits at 2.2:1 on white, so
+        // the second half of the wordmark takes this darkened form instead.
+        brandAlt: '#b45309',
+        mark: { plate: '#334155', accent: '#f59e0b' },
+    },
+    {
+        id: 'inorganic',
+        name: { lead: 'inorganic', alt: 'cheminfo', dot: true },
+        host: 'inorganic.cheminfo.org',
+        repository: 'https://github.com/cheminfo/inorganic.cheminfo.org',
+        tagline: 'Name an inorganic compound, and write its formula.',
+        group: 'practice',
+        brand: '#a3620a',
+        // The cyan the mark's named ion is drawn in sits at 1.8:1 on white, so the
+        // second half of the wordmark takes this darkened form instead.
+        brandAlt: '#0e7490',
+        mark: { plate: '#a3620a', accent: '#22d3ee' },
+    },
 ];
 /**
  * The address of a site, which is its host over https.

package/lib/ecosystem/core/sites.js.map

@@ -1 +1 @@
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package/lib/ecosystem/core/types.d.ts

@@ -1,6 +1,6 @@
 import type { SiteGroupId } from './groups.ts';
 /** The sites the menu links to. */
-export type SiteId = 'learn' | 'inchi' | 'vcl' | 'smiles' | 'openbabel' | 'chemcalc' | 'dbe' | 'nmrium' | 'metabo' | 'derepflow' | 'surge' | 'tex' | 'lcao' | 'regexp' | 'pdb' | 'elucidation' | 'equilibrium' | 'polycarp' | '3d' | 'periodic-table' | 'database' | 'symmetry' | 'osiris';
+export type SiteId = 'learn' | 'inchi' | 'vcl' | 'smiles' | 'openbabel' | 'chemcalc' | 'dbe' | 'nmrium' | 'metabo' | 'derepflow' | 'surge' | 'tex' | 'lcao' | 'regexp' | 'pdb' | 'elucidation' | 'equilibrium' | 'polycarp' | '3d' | 'periodic-table' | 'database' | 'symmetry' | 'osiris' | 'atoms' | 'moles' | 'inorganic';
 /** A site's name, split the way its own wordmark splits it. */
 export interface SiteName {
     /**

package/lib/ecosystem/core/types.d.ts.map

@@ -1 +1 @@
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package/lib/ecosystem/ui/glyphs.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"glyphs.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/ui/glyphs.tsx"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAE/C,4DAA4D;AAC5D,eAAO,MAAM,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,SAAS,CA0Y7D,CAAC"}
+{"version":3,"file":"glyphs.d.ts","sourceRoot":"","sources":["../../../src/ecosystem/ui/glyphs.tsx"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAEvC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AAE/C,4DAA4D;AAC5D,eAAO,MAAM,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,KAAK,SAAS,CA6b7D,CAAC"}

package/lib/ecosystem/ui/glyphs.js

@@ -67,5 +67,14 @@ export const GLYPHS = {
     // is how this site reads a set of molecules against one another. The line
     // carries the answering colour because the line is the molecule.
     osiris: (alt) => (_jsxs(_Fragment, { children: [_jsx("g", { stroke: "#ffffff", strokeWidth: "2.2", strokeLinecap: "round", fill: "none", children: _jsx("path", { d: "M7.4 6.8V25.2M16 6.8V25.2M24.6 6.8V25.2" }) }), _jsx("path", { d: "M7.4 21.6 16 10.4 24.6 17.2", fill: "none", stroke: alt, strokeWidth: "3.2", strokeLinecap: "round", strokeLinejoin: "round" })] })),
+    // A nucleus with one electron on its orbit. The electron carries the
+    // answering colour because the electron is what every tool here counts.
+    atoms: (alt) => (_jsxs(_Fragment, { children: [_jsx("circle", { cx: "16", cy: "16", r: "10.5", fill: "none", stroke: "#ffffff", strokeWidth: "2.2" }), _jsx("circle", { cx: "16", cy: "16", r: "3.6", fill: "#ffffff" }), _jsx("circle", { cx: "23.42", cy: "8.58", r: "3.2", fill: alt })] })),
+    // A balance still tipped, its two pans holding the two sides of the
+    // calculation. The pan that carries the answer carries the colour.
+    moles: (alt) => (_jsxs(_Fragment, { children: [_jsx("path", { d: "M6.5 11.5 25.5 15.5M16 13.5V24M10.5 24h11", fill: "none", stroke: "#ffffff", strokeWidth: "2.2", strokeLinecap: "round", strokeLinejoin: "round" }), _jsx("circle", { cx: "6.5", cy: "11.5", r: "3.2", fill: "#ffffff" }), _jsx("circle", { cx: "25.5", cy: "15.5", r: "3.2", fill: alt })] })),
+    // One cell of an ionic lattice, cations and anions alternating: the shape of
+    // the compounds this site names. The ion being named carries the colour.
+    inorganic: (alt) => (_jsxs(_Fragment, { children: [_jsx("path", { d: "M9.5 9.5h13v13h-13Z", fill: "none", stroke: "#ffffff", strokeWidth: "1.6", opacity: "0.55" }), _jsxs("g", { fill: "#ffffff", children: [_jsx("circle", { cx: "9.5", cy: "9.5", r: "4.3" }), _jsx("circle", { cx: "22.5", cy: "9.5", r: "2.7" }), _jsx("circle", { cx: "9.5", cy: "22.5", r: "2.7" })] }), _jsx("circle", { cx: "22.5", cy: "22.5", r: "4.3", fill: alt })] })),
 };
 //# sourceMappingURL=glyphs.js.map