ralph-hero-knowledge-index 0.1.17 → 0.1.19
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.claude-plugin/plugin.json +1 -1
- package/.mcp.json +1 -1
- package/dist/db.d.ts +3 -0
- package/dist/db.js +15 -0
- package/dist/db.js.map +1 -1
- package/dist/embedder.d.ts +1 -1
- package/dist/embedder.js +7 -2
- package/dist/embedder.js.map +1 -1
- package/dist/graph-builder.d.ts +1 -0
- package/dist/graph-builder.js +5 -2
- package/dist/graph-builder.js.map +1 -1
- package/dist/graph-tools.js +230 -7
- package/dist/graph-tools.js.map +1 -1
- package/dist/reindex.js +24 -3
- package/dist/reindex.js.map +1 -1
- package/dist/search.d.ts +18 -0
- package/dist/search.js +48 -1
- package/dist/search.js.map +1 -1
- package/package.json +1 -1
- package/src/__tests__/embedder.test.ts +100 -0
- package/src/__tests__/graph-tools.test.ts +489 -0
- package/src/__tests__/reindex.test.ts +155 -2
- package/src/__tests__/search.test.ts +153 -1
- package/src/db.ts +18 -0
- package/src/embedder.ts +8 -2
- package/src/graph-builder.ts +7 -2
- package/src/graph-tools.ts +276 -9
- package/src/reindex.ts +27 -3
- package/src/search.ts +58 -1
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@@ -1,6 +1,6 @@
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{
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"name": "ralph-knowledge",
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-
"version": "0.1.
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+
"version": "0.1.19",
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"description": "Knowledge graph for ralph-hero: semantic search, relationship traversal, and document indexing across thoughts/ documents. Optional companion to ralph-hero.",
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"author": {
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"name": "Chad Dubiel",
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package/.mcp.json
CHANGED
package/dist/db.d.ts
CHANGED
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@@ -110,6 +110,9 @@ export declare class KnowledgeDB {
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upsertSyncRecord(path: string, mtime: number): void;
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deleteSyncRecord(path: string): void;
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getAllSyncPaths(): string[];
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clearSyncRecords(): void;
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getMeta(key: string): string | undefined;
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setMeta(key: string, value: string): void;
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documentExists(id: string): boolean;
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deleteDocument(id: string): void;
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clearAll(): void;
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package/dist/db.js
CHANGED
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@@ -66,6 +66,11 @@ export class KnowledgeDB {
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mtime INTEGER NOT NULL,
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indexed_at INTEGER NOT NULL
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);
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CREATE TABLE IF NOT EXISTS meta (
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key TEXT PRIMARY KEY,
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value TEXT
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);
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`);
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// Migration: add is_stub column for databases created before it existed.
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// SQLite has no IF NOT EXISTS for ALTER TABLE ADD COLUMN, so we catch the
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@@ -282,6 +287,16 @@ export class KnowledgeDB {
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getAllSyncPaths() {
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return this.db.prepare("SELECT path FROM sync").all().map(r => r.path);
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}
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clearSyncRecords() {
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this.db.prepare("DELETE FROM sync").run();
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}
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getMeta(key) {
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const row = this.db.prepare("SELECT value FROM meta WHERE key = ?").get(key);
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return row?.value;
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}
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setMeta(key, value) {
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this.db.prepare("INSERT INTO meta (key, value) VALUES (?, ?) ON CONFLICT(key) DO UPDATE SET value = excluded.value").run(key, value);
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}
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documentExists(id) {
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const row = this.db.prepare("SELECT 1 FROM documents WHERE id = ?").get(id);
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return row !== undefined;
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package/dist/db.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
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package/dist/embedder.d.ts
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import { type FeatureExtractionPipeline } from "@huggingface/transformers";
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export declare function getEmbedder(): Promise<FeatureExtractionPipeline>;
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export declare function embed(text: string): Promise<Float32Array>;
|
|
4
|
-
export declare function prepareTextForEmbedding(title: string, content: string): string;
|
|
4
|
+
export declare function prepareTextForEmbedding(title: string, tags: string[], content: string): string;
|
package/dist/embedder.js
CHANGED
|
@@ -18,7 +18,12 @@ export async function embed(text) {
|
|
|
18
18
|
});
|
|
19
19
|
return new Float32Array(output.data);
|
|
20
20
|
}
|
|
21
|
-
export function prepareTextForEmbedding(title, content) {
|
|
22
|
-
|
|
21
|
+
export function prepareTextForEmbedding(title, tags, content) {
|
|
22
|
+
const tagLine = tags.length > 0 ? tags.join(", ") : "";
|
|
23
|
+
// Extract first paragraph: split on blank lines, take first non-empty segment
|
|
24
|
+
const paragraphs = content.split(/\n\n+/);
|
|
25
|
+
const firstParagraph = paragraphs.find(p => p.trim().length > 0)?.trim() ?? "";
|
|
26
|
+
const parts = [title, tagLine, firstParagraph].filter(p => p.length > 0);
|
|
27
|
+
return parts.join("\n").slice(0, MAX_CHARS);
|
|
23
28
|
}
|
|
24
29
|
//# sourceMappingURL=embedder.js.map
|
package/dist/embedder.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"embedder.js","sourceRoot":"","sources":["../src/embedder.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,QAAQ,GAET,MAAM,2BAA2B,CAAC;AAEnC,MAAM,QAAQ,GAAG,yBAAyB,CAAC;AAC3C,MAAM,SAAS,GAAG,GAAG,CAAC;AAEtB,IAAI,gBAAgB,GAAqC,IAAI,CAAC;AAE9D,MAAM,CAAC,KAAK,UAAU,WAAW;IAC/B,IAAI,CAAC,gBAAgB,EAAE,CAAC;QACtB,mEAAmE;QACnE,gBAAgB,GAAG,CAAC,MAAM,QAAQ,CAChC,oBAAoB,EACpB,QAAQ,CACT,CAA8B,CAAC;IAClC,CAAC;IACD,OAAO,gBAAgB,CAAC;AAC1B,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,KAAK,CAAC,IAAY;IACtC,MAAM,QAAQ,GAAG,MAAM,WAAW,EAAE,CAAC;IACrC,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;IAC3C,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,SAAS,EAAE;QACvC,OAAO,EAAE,MAAM;QACf,SAAS,EAAE,IAAI;KAChB,CAAC,CAAC;IACH,OAAO,IAAI,YAAY,CAAC,MAAM,CAAC,IAAyB,CAAC,CAAC;AAC5D,CAAC;AAED,MAAM,UAAU,uBAAuB,CACrC,KAAa,EACb,OAAe;IAEf,OAAO,GAAG,KAAK,KAAK,OAAO,EAAE,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;
|
|
1
|
+
{"version":3,"file":"embedder.js","sourceRoot":"","sources":["../src/embedder.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,QAAQ,GAET,MAAM,2BAA2B,CAAC;AAEnC,MAAM,QAAQ,GAAG,yBAAyB,CAAC;AAC3C,MAAM,SAAS,GAAG,GAAG,CAAC;AAEtB,IAAI,gBAAgB,GAAqC,IAAI,CAAC;AAE9D,MAAM,CAAC,KAAK,UAAU,WAAW;IAC/B,IAAI,CAAC,gBAAgB,EAAE,CAAC;QACtB,mEAAmE;QACnE,gBAAgB,GAAG,CAAC,MAAM,QAAQ,CAChC,oBAAoB,EACpB,QAAQ,CACT,CAA8B,CAAC;IAClC,CAAC;IACD,OAAO,gBAAgB,CAAC;AAC1B,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,KAAK,CAAC,IAAY;IACtC,MAAM,QAAQ,GAAG,MAAM,WAAW,EAAE,CAAC;IACrC,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;IAC3C,MAAM,MAAM,GAAG,MAAM,QAAQ,CAAC,SAAS,EAAE;QACvC,OAAO,EAAE,MAAM;QACf,SAAS,EAAE,IAAI;KAChB,CAAC,CAAC;IACH,OAAO,IAAI,YAAY,CAAC,MAAM,CAAC,IAAyB,CAAC,CAAC;AAC5D,CAAC;AAED,MAAM,UAAU,uBAAuB,CACrC,KAAa,EACb,IAAc,EACd,OAAe;IAEf,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;IACvD,8EAA8E;IAC9E,MAAM,UAAU,GAAG,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;IAC1C,MAAM,cAAc,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,CAAC,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;IAC/E,MAAM,KAAK,GAAG,CAAC,KAAK,EAAE,OAAO,EAAE,cAAc,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IACzE,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;AAC9C,CAAC"}
|
package/dist/graph-builder.d.ts
CHANGED
package/dist/graph-builder.js
CHANGED
|
@@ -21,14 +21,17 @@ export class GraphBuilder {
|
|
|
21
21
|
}
|
|
22
22
|
// Load all relationships and add as directed edges
|
|
23
23
|
const rels = this.db.db
|
|
24
|
-
.prepare("SELECT source_id, target_id, type FROM relationships")
|
|
24
|
+
.prepare("SELECT source_id, target_id, type, context FROM relationships")
|
|
25
25
|
.all();
|
|
26
26
|
for (const rel of rels) {
|
|
27
27
|
// Defensively skip edges where source or target node does not exist
|
|
28
28
|
if (!graph.hasNode(rel.source_id) || !graph.hasNode(rel.target_id)) {
|
|
29
29
|
continue;
|
|
30
30
|
}
|
|
31
|
-
graph.addDirectedEdge(rel.source_id, rel.target_id, {
|
|
31
|
+
graph.addDirectedEdge(rel.source_id, rel.target_id, {
|
|
32
|
+
type: rel.type,
|
|
33
|
+
context: rel.context ?? null,
|
|
34
|
+
});
|
|
32
35
|
}
|
|
33
36
|
return graph;
|
|
34
37
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"graph-builder.js","sourceRoot":"","sources":["../src/graph-builder.ts"],"names":[],"mappings":"AAAA,OAAO,UAAU,MAAM,YAAY,CAAC;AAIpC,MAAM,EAAE,kBAAkB,EAAE,GAAG,UAAU,CAAC;
|
|
1
|
+
{"version":3,"file":"graph-builder.js","sourceRoot":"","sources":["../src/graph-builder.ts"],"names":[],"mappings":"AAAA,OAAO,UAAU,MAAM,YAAY,CAAC;AAIpC,MAAM,EAAE,kBAAkB,EAAE,GAAG,UAAU,CAAC;AAgB1C,MAAM,OAAO,YAAY;IACN,EAAE,CAAc;IAEjC,YAAY,EAAe;QACzB,IAAI,CAAC,EAAE,GAAG,EAAE,CAAC;IACf,CAAC;IAED,UAAU;QACR,MAAM,KAAK,GAAmB,IAAI,kBAAkB,EAAkC,CAAC;QAEvF,sCAAsC;QACtC,MAAM,IAAI,GAAG,IAAI,CAAC,EAAE,CAAC,EAAE;aACpB,OAAO,CAAC,0FAA0F,CAAC;aACnG,GAAG,EAMJ,CAAC;QAEH,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;YACvB,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE;gBACpB,KAAK,EAAE,GAAG,CAAC,KAAK;gBAChB,IAAI,EAAE,GAAG,CAAC,IAAI;gBACd,IAAI,EAAE,GAAG,CAAC,IAAI;gBACd,MAAM,EAAE,GAAG,CAAC,MAAM;aACnB,CAAC,CAAC;QACL,CAAC;QAED,mDAAmD;QACnD,MAAM,IAAI,GAAG,IAAI,CAAC,EAAE,CAAC,EAAE;aACpB,OAAO,CAAC,+DAA+D,CAAC;aACxE,GAAG,EAKJ,CAAC;QAEH,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;YACvB,oEAAoE;YACpE,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC;gBACnE,SAAS;YACX,CAAC;YACD,KAAK,CAAC,eAAe,CAAC,GAAG,CAAC,SAAS,EAAE,GAAG,CAAC,SAAS,EAAE;gBAClD,IAAI,EAAE,GAAG,CAAC,IAAI;gBACd,OAAO,EAAE,GAAG,CAAC,OAAO,IAAI,IAAI;aAC7B,CAAC,CAAC;QACL,CAAC;QAED,OAAO,KAAK,CAAC;IACf,CAAC;CACF"}
|
package/dist/graph-tools.js
CHANGED
|
@@ -84,6 +84,12 @@ export function registerGraphTools(server, db) {
|
|
|
84
84
|
.max(5.0)
|
|
85
85
|
.optional()
|
|
86
86
|
.describe("Louvain resolution parameter (default 1.0). Higher values produce more, smaller communities."),
|
|
87
|
+
limit: z
|
|
88
|
+
.number()
|
|
89
|
+
.int()
|
|
90
|
+
.min(1)
|
|
91
|
+
.optional()
|
|
92
|
+
.describe("Max communities to return, sorted by size descending (default: all)."),
|
|
87
93
|
}, async (args) => {
|
|
88
94
|
try {
|
|
89
95
|
const resolution = args.resolution ?? 1.0;
|
|
@@ -117,14 +123,19 @@ export function registerGraphTools(server, db) {
|
|
|
117
123
|
communityId,
|
|
118
124
|
members: [member],
|
|
119
125
|
size: 1,
|
|
120
|
-
label: computeLabel(db, [member]),
|
|
121
126
|
});
|
|
122
127
|
communityId++;
|
|
123
128
|
});
|
|
124
|
-
// Sort by size descending
|
|
129
|
+
// Sort by size descending, then slice before computing labels
|
|
125
130
|
communities.sort((a, b) => b.size - a.size);
|
|
131
|
+
const sliced = args.limit ? communities.slice(0, args.limit) : communities;
|
|
132
|
+
// Compute labels only for returned communities
|
|
133
|
+
const labeled = sliced.map((c) => ({
|
|
134
|
+
...c,
|
|
135
|
+
label: computeLabel(db, c.members),
|
|
136
|
+
}));
|
|
126
137
|
const result = {
|
|
127
|
-
communities,
|
|
138
|
+
communities: labeled,
|
|
128
139
|
modularity: 0,
|
|
129
140
|
totalDocuments,
|
|
130
141
|
};
|
|
@@ -153,20 +164,25 @@ export function registerGraphTools(server, db) {
|
|
|
153
164
|
type: attrs.type ?? null,
|
|
154
165
|
});
|
|
155
166
|
}
|
|
156
|
-
// Build community entries
|
|
167
|
+
// Build community entries without labels first (defer label computation)
|
|
157
168
|
const communities = [];
|
|
158
169
|
for (const [communityIndex, members] of communityMap) {
|
|
159
170
|
communities.push({
|
|
160
171
|
communityId: communityIndex,
|
|
161
172
|
members,
|
|
162
173
|
size: members.length,
|
|
163
|
-
label: computeLabel(db, members),
|
|
164
174
|
});
|
|
165
175
|
}
|
|
166
|
-
// Sort by size descending
|
|
176
|
+
// Sort by size descending, then slice before computing labels
|
|
167
177
|
communities.sort((a, b) => b.size - a.size);
|
|
178
|
+
const sliced = args.limit ? communities.slice(0, args.limit) : communities;
|
|
179
|
+
// Compute labels only for returned communities
|
|
180
|
+
const labeled = sliced.map((c) => ({
|
|
181
|
+
...c,
|
|
182
|
+
label: computeLabel(db, c.members),
|
|
183
|
+
}));
|
|
168
184
|
const result = {
|
|
169
|
-
communities,
|
|
185
|
+
communities: labeled,
|
|
170
186
|
modularity: detailed.modularity,
|
|
171
187
|
totalDocuments,
|
|
172
188
|
};
|
|
@@ -189,6 +205,118 @@ export function registerGraphTools(server, db) {
|
|
|
189
205
|
}
|
|
190
206
|
});
|
|
191
207
|
// -------------------------------------------------------------------------
|
|
208
|
+
// knowledge_community — fetch a single community by ID
|
|
209
|
+
// -------------------------------------------------------------------------
|
|
210
|
+
server.tool("knowledge_community", "Fetch a single community by ID from Louvain detection. Returns the community's members, size, and label.", {
|
|
211
|
+
communityId: z.number().int().describe("Community ID from knowledge_communities results."),
|
|
212
|
+
}, async (args) => {
|
|
213
|
+
try {
|
|
214
|
+
const builder = new GraphBuilder(db);
|
|
215
|
+
const graph = builder.buildGraph();
|
|
216
|
+
// Handle empty graph
|
|
217
|
+
if (graph.order === 0) {
|
|
218
|
+
return {
|
|
219
|
+
content: [
|
|
220
|
+
{
|
|
221
|
+
type: "text",
|
|
222
|
+
text: `Error: Community ${args.communityId} not found. Graph is empty.`,
|
|
223
|
+
},
|
|
224
|
+
],
|
|
225
|
+
isError: true,
|
|
226
|
+
};
|
|
227
|
+
}
|
|
228
|
+
// Handle graph with no edges — each node is its own community
|
|
229
|
+
if (graph.size === 0) {
|
|
230
|
+
let communityId = 0;
|
|
231
|
+
let found = null;
|
|
232
|
+
graph.forEachNode((nodeId, attrs) => {
|
|
233
|
+
if (communityId === args.communityId) {
|
|
234
|
+
found = [
|
|
235
|
+
{
|
|
236
|
+
id: nodeId,
|
|
237
|
+
title: attrs.title ?? null,
|
|
238
|
+
type: attrs.type ?? null,
|
|
239
|
+
},
|
|
240
|
+
];
|
|
241
|
+
}
|
|
242
|
+
communityId++;
|
|
243
|
+
});
|
|
244
|
+
if (found === null) {
|
|
245
|
+
return {
|
|
246
|
+
content: [
|
|
247
|
+
{
|
|
248
|
+
type: "text",
|
|
249
|
+
text: `Error: Community ${args.communityId} not found. Valid IDs: 0-${graph.order - 1}.`,
|
|
250
|
+
},
|
|
251
|
+
],
|
|
252
|
+
isError: true,
|
|
253
|
+
};
|
|
254
|
+
}
|
|
255
|
+
const community = {
|
|
256
|
+
communityId: args.communityId,
|
|
257
|
+
members: found,
|
|
258
|
+
size: found.length,
|
|
259
|
+
label: computeLabel(db, found),
|
|
260
|
+
};
|
|
261
|
+
return {
|
|
262
|
+
content: [
|
|
263
|
+
{ type: "text", text: JSON.stringify(community, null, 2) },
|
|
264
|
+
],
|
|
265
|
+
};
|
|
266
|
+
}
|
|
267
|
+
// Run Louvain with same deterministic seed as knowledge_communities
|
|
268
|
+
const partition = louvain(graph, { rng: () => 0.5 });
|
|
269
|
+
// Extract members for the requested community ID
|
|
270
|
+
const members = [];
|
|
271
|
+
for (const [nodeId, communityIndex] of Object.entries(partition)) {
|
|
272
|
+
if (communityIndex === args.communityId) {
|
|
273
|
+
const attrs = graph.getNodeAttributes(nodeId);
|
|
274
|
+
members.push({
|
|
275
|
+
id: nodeId,
|
|
276
|
+
title: attrs.title ?? null,
|
|
277
|
+
type: attrs.type ?? null,
|
|
278
|
+
});
|
|
279
|
+
}
|
|
280
|
+
}
|
|
281
|
+
if (members.length === 0) {
|
|
282
|
+
// Determine valid community IDs for a helpful error message
|
|
283
|
+
const validIds = new Set(Object.values(partition));
|
|
284
|
+
const sortedIds = [...validIds].sort((a, b) => a - b);
|
|
285
|
+
return {
|
|
286
|
+
content: [
|
|
287
|
+
{
|
|
288
|
+
type: "text",
|
|
289
|
+
text: `Error: Community ${args.communityId} not found. Valid IDs: ${sortedIds.join(", ")}.`,
|
|
290
|
+
},
|
|
291
|
+
],
|
|
292
|
+
isError: true,
|
|
293
|
+
};
|
|
294
|
+
}
|
|
295
|
+
const community = {
|
|
296
|
+
communityId: args.communityId,
|
|
297
|
+
members,
|
|
298
|
+
size: members.length,
|
|
299
|
+
label: computeLabel(db, members),
|
|
300
|
+
};
|
|
301
|
+
return {
|
|
302
|
+
content: [
|
|
303
|
+
{ type: "text", text: JSON.stringify(community, null, 2) },
|
|
304
|
+
],
|
|
305
|
+
};
|
|
306
|
+
}
|
|
307
|
+
catch (e) {
|
|
308
|
+
return {
|
|
309
|
+
content: [
|
|
310
|
+
{
|
|
311
|
+
type: "text",
|
|
312
|
+
text: `Error: ${e.message}`,
|
|
313
|
+
},
|
|
314
|
+
],
|
|
315
|
+
isError: true,
|
|
316
|
+
};
|
|
317
|
+
}
|
|
318
|
+
});
|
|
319
|
+
// -------------------------------------------------------------------------
|
|
192
320
|
// knowledge_central — PageRank-based document importance ranking
|
|
193
321
|
// -------------------------------------------------------------------------
|
|
194
322
|
server.tool("knowledge_central", "Rank documents by PageRank (importance). Returns top documents by incoming citation weight. Isolated nodes (no edges) receive a score of 0 and rank last.", {
|
|
@@ -470,5 +598,100 @@ export function registerGraphTools(server, db) {
|
|
|
470
598
|
};
|
|
471
599
|
}
|
|
472
600
|
});
|
|
601
|
+
// -------------------------------------------------------------------------
|
|
602
|
+
// knowledge_subgraph — extract N-hop neighborhood around a document
|
|
603
|
+
// -------------------------------------------------------------------------
|
|
604
|
+
server.tool("knowledge_subgraph", "Extract an N-hop neighborhood subgraph around a document. Returns deduplicated nodes and edges with distance from root.", {
|
|
605
|
+
root: z.string().describe("Document ID to center the subgraph on."),
|
|
606
|
+
depth: z
|
|
607
|
+
.number()
|
|
608
|
+
.int()
|
|
609
|
+
.min(1)
|
|
610
|
+
.max(5)
|
|
611
|
+
.optional()
|
|
612
|
+
.describe("Max hops from root (default: 1). Use 1 for immediate neighbors, 2 for neighbors-of-neighbors."),
|
|
613
|
+
brief: z
|
|
614
|
+
.boolean()
|
|
615
|
+
.optional()
|
|
616
|
+
.describe("If true, omit edge context and reduce node metadata (default: false)."),
|
|
617
|
+
}, async (args) => {
|
|
618
|
+
try {
|
|
619
|
+
const depth = args.depth ?? 1;
|
|
620
|
+
const graph = new GraphBuilder(db).buildGraph();
|
|
621
|
+
if (!graph.hasNode(args.root)) {
|
|
622
|
+
return {
|
|
623
|
+
content: [
|
|
624
|
+
{
|
|
625
|
+
type: "text",
|
|
626
|
+
text: `Error: Document '${args.root}' not found in graph.`,
|
|
627
|
+
},
|
|
628
|
+
],
|
|
629
|
+
isError: true,
|
|
630
|
+
};
|
|
631
|
+
}
|
|
632
|
+
// BFS to collect nodes within N hops
|
|
633
|
+
const visited = new Map(); // nodeId -> distance
|
|
634
|
+
const queue = [[args.root, 0]];
|
|
635
|
+
visited.set(args.root, 0);
|
|
636
|
+
while (queue.length > 0) {
|
|
637
|
+
const [current, dist] = queue.shift();
|
|
638
|
+
if (dist >= depth)
|
|
639
|
+
continue;
|
|
640
|
+
for (const neighbor of graph.neighbors(current)) {
|
|
641
|
+
if (!visited.has(neighbor)) {
|
|
642
|
+
visited.set(neighbor, dist + 1);
|
|
643
|
+
queue.push([neighbor, dist + 1]);
|
|
644
|
+
}
|
|
645
|
+
}
|
|
646
|
+
}
|
|
647
|
+
// Collect nodes
|
|
648
|
+
const nodes = [...visited.entries()].map(([id, dist]) => {
|
|
649
|
+
const attrs = graph.getNodeAttributes(id);
|
|
650
|
+
return {
|
|
651
|
+
id,
|
|
652
|
+
title: attrs.title ?? null,
|
|
653
|
+
type: attrs.type ?? null,
|
|
654
|
+
date: attrs.date ?? null,
|
|
655
|
+
distance: dist,
|
|
656
|
+
tags: db.getTags(id),
|
|
657
|
+
};
|
|
658
|
+
});
|
|
659
|
+
// Collect edges between visited nodes (use forEachOutEdge to avoid duplicates)
|
|
660
|
+
const edgeSet = new Set();
|
|
661
|
+
const edges = [];
|
|
662
|
+
for (const nodeId of visited.keys()) {
|
|
663
|
+
graph.forEachOutEdge(nodeId, (edgeKey, attrs, source, target) => {
|
|
664
|
+
if (visited.has(target) && !edgeSet.has(edgeKey)) {
|
|
665
|
+
edgeSet.add(edgeKey);
|
|
666
|
+
const entry = { source, target, type: attrs.type };
|
|
667
|
+
if (!args.brief) {
|
|
668
|
+
entry.context = attrs.context ?? null;
|
|
669
|
+
}
|
|
670
|
+
edges.push(entry);
|
|
671
|
+
}
|
|
672
|
+
});
|
|
673
|
+
}
|
|
674
|
+
const result = {
|
|
675
|
+
root: args.root,
|
|
676
|
+
depth,
|
|
677
|
+
nodes,
|
|
678
|
+
edges,
|
|
679
|
+
graphSize: { nodes: nodes.length, edges: edges.length },
|
|
680
|
+
};
|
|
681
|
+
return {
|
|
682
|
+
content: [
|
|
683
|
+
{ type: "text", text: JSON.stringify(result, null, 2) },
|
|
684
|
+
],
|
|
685
|
+
};
|
|
686
|
+
}
|
|
687
|
+
catch (e) {
|
|
688
|
+
return {
|
|
689
|
+
content: [
|
|
690
|
+
{ type: "text", text: `Error: ${e.message}` },
|
|
691
|
+
],
|
|
692
|
+
isError: true,
|
|
693
|
+
};
|
|
694
|
+
}
|
|
695
|
+
});
|
|
473
696
|
}
|
|
474
697
|
//# sourceMappingURL=graph-tools.js.map
|
package/dist/graph-tools.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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|
package/dist/reindex.js
CHANGED
|
@@ -12,8 +12,19 @@ export async function reindex(dirs, dbPath, generate = false) {
|
|
|
12
12
|
console.log(`Indexing ${dirs.join(", ")} -> ${dbPath}`);
|
|
13
13
|
const db = new KnowledgeDB(dbPath);
|
|
14
14
|
const fts = new FtsSearch(db);
|
|
15
|
+
fts.ensureTable();
|
|
15
16
|
const vec = new VectorSearch(db);
|
|
16
17
|
vec.createIndex();
|
|
18
|
+
// Schema version check — force full re-embed when embedding algorithm changes
|
|
19
|
+
const SCHEMA_VERSION = "2";
|
|
20
|
+
const currentVersion = db.getMeta("schema_version");
|
|
21
|
+
let needsFullFtsRebuild = false;
|
|
22
|
+
if (currentVersion !== SCHEMA_VERSION) {
|
|
23
|
+
console.log("Schema version changed — clearing sync records to force full re-embed");
|
|
24
|
+
db.clearSyncRecords();
|
|
25
|
+
db.setMeta("schema_version", SCHEMA_VERSION);
|
|
26
|
+
needsFullFtsRebuild = true;
|
|
27
|
+
}
|
|
17
28
|
// Phase 1: Discover files on disk
|
|
18
29
|
const filesOnDisk = [];
|
|
19
30
|
for (const dir of dirs) {
|
|
@@ -29,6 +40,7 @@ export async function reindex(dirs, dbPath, generate = false) {
|
|
|
29
40
|
for (const syncedPath of syncedPaths) {
|
|
30
41
|
if (!filesOnDiskSet.has(syncedPath)) {
|
|
31
42
|
const id = basename(syncedPath, ".md");
|
|
43
|
+
fts.deleteFtsEntry(id);
|
|
32
44
|
db.deleteDocument(id);
|
|
33
45
|
vec.deleteEmbedding(id);
|
|
34
46
|
db.deleteSyncRecord(syncedPath);
|
|
@@ -69,6 +81,10 @@ export async function reindex(dirs, dbPath, generate = false) {
|
|
|
69
81
|
if (missing.length > 0) {
|
|
70
82
|
console.warn(` Warning: ${id} missing frontmatter: ${missing.join(", ")}`);
|
|
71
83
|
}
|
|
84
|
+
// Delete old FTS entry BEFORE upsert (only if document already exists)
|
|
85
|
+
if (db.documentExists(parsed.id)) {
|
|
86
|
+
fts.deleteFtsEntry(parsed.id);
|
|
87
|
+
}
|
|
72
88
|
db.upsertDocument({
|
|
73
89
|
id: parsed.id,
|
|
74
90
|
path: parsed.path,
|
|
@@ -79,6 +95,8 @@ export async function reindex(dirs, dbPath, generate = false) {
|
|
|
79
95
|
githubIssue: parsed.githubIssue,
|
|
80
96
|
content: parsed.content,
|
|
81
97
|
});
|
|
98
|
+
// Insert new FTS entry AFTER upsert
|
|
99
|
+
fts.upsertFtsEntry(parsed.id);
|
|
82
100
|
if (parsed.tags.length > 0) {
|
|
83
101
|
db.setTags(parsed.id, parsed.tags);
|
|
84
102
|
}
|
|
@@ -96,7 +114,7 @@ export async function reindex(dirs, dbPath, generate = false) {
|
|
|
96
114
|
db.upsertStubDocument(edge.targetId);
|
|
97
115
|
db.addRelationship(edge.sourceId, edge.targetId, "untyped", edge.context);
|
|
98
116
|
}
|
|
99
|
-
const text = prepareTextForEmbedding(parsed.title, parsed.content);
|
|
117
|
+
const text = prepareTextForEmbedding(parsed.title, parsed.tags, parsed.content);
|
|
100
118
|
try {
|
|
101
119
|
const embedding = await embed(text);
|
|
102
120
|
vec.upsertEmbedding(parsed.id, embedding);
|
|
@@ -110,8 +128,11 @@ export async function reindex(dirs, dbPath, generate = false) {
|
|
|
110
128
|
console.log(` ${indexed}/${filesOnDisk.length} indexed`);
|
|
111
129
|
}
|
|
112
130
|
}
|
|
113
|
-
// Phase 3:
|
|
114
|
-
|
|
131
|
+
// Phase 3: Full FTS rebuild only when schema version changed or first-time indexing.
|
|
132
|
+
// Per-document FTS updates already applied in Phase 1 (stale deletion) and Phase 2 (upserts).
|
|
133
|
+
if (needsFullFtsRebuild) {
|
|
134
|
+
fts.rebuildIndex();
|
|
135
|
+
}
|
|
115
136
|
// Collect all relationship targets from the database (covers both current batch and prior runs)
|
|
116
137
|
const allTargetIds = new Set(db.db.prepare("SELECT DISTINCT target_id FROM relationships").all()
|
|
117
138
|
.map(r => r.target_id));
|