rafcode 1.2.0 → 2.0.0

package/dist/core/claude-runner.js

@@ -1,6 +1,9 @@
+import * as fs from 'node:fs';
 import * as pty from 'node-pty';
 import { execSync, spawn } from 'node:child_process';
 import { logger } from '../utils/logger.js';
+import { renderStreamEvent } from '../parsers/stream-renderer.js';
+import { getHeadCommitHash, getHeadCommitMessage, isFileCommittedInHead } from './git.js';
 function getClaudePath() {
     try {
         return execSync('which claude', { encoding: 'utf-8' }).trim();
@@ -15,6 +18,145 @@ const CONTEXT_OVERFLOW_PATTERNS = [
     /maximum context/i,
     /context window/i,
 ];
+const COMPLETION_MARKER_PATTERN = /<promise>(COMPLETE|FAILED)<\/promise>/i;
+/**
+ * Grace period in ms after completion marker is detected before terminating.
+ * Allows time for git commit operations to complete.
+ */
+export const COMPLETION_GRACE_PERIOD_MS = 60_000;
+/**
+ * Hard maximum grace period in ms. If the commit hasn't landed by this point,
+ * the process is killed regardless.
+ */
+export const COMPLETION_HARD_MAX_MS = 180_000;
+/**
+ * Interval in ms for polling commit verification after the initial grace period expires.
+ */
+export const COMMIT_POLL_INTERVAL_MS = 10_000;
+/**
+ * Interval in ms for polling the outcome file for completion markers.
+ */
+export const OUTCOME_POLL_INTERVAL_MS = 5_000;
+const COMPLETE_MARKER_PATTERN = /<promise>COMPLETE<\/promise>/i;
+/**
+ * Verify that the expected commit has been made.
+ * Checks: HEAD changed, commit message matches prefix, outcome file is committed.
+ */
+function verifyCommit(commitContext) {
+    const currentHead = getHeadCommitHash();
+    if (!currentHead || currentHead === commitContext.preExecutionHead) {
+        return false;
+    }
+    const message = getHeadCommitMessage();
+    if (!message || !message.startsWith(commitContext.expectedPrefix)) {
+        return false;
+    }
+    if (!isFileCommittedInHead(commitContext.outcomeFilePath)) {
+        return false;
+    }
+    return true;
+}
+function createCompletionDetector(killFn, outcomeFilePath, commitContext) {
+    let graceHandle = null;
+    let commitPollHandle = null;
+    let hardMaxHandle = null;
+    let pollHandle = null;
+    let initialMtime = 0;
+    let detectedMarkerIsComplete = false;
+    // Record initial mtime of outcome file to avoid false positives from previous runs
+    if (outcomeFilePath) {
+        try {
+            if (fs.existsSync(outcomeFilePath)) {
+                initialMtime = fs.statSync(outcomeFilePath).mtimeMs;
+            }
+        }
+        catch {
+            // Ignore stat errors
+        }
+    }
+    /**
+     * Called when the initial grace period expires.
+     * If commit verification is needed and the commit hasn't landed yet,
+     * start polling for the commit up to the hard maximum.
+     */
+    function onGracePeriodExpired() {
+        if (commitContext && detectedMarkerIsComplete) {
+            // Check if commit already landed
+            if (verifyCommit(commitContext)) {
+                logger.debug('Grace period expired - commit verified, terminating Claude process');
+                killFn();
+                return;
+            }
+            // Commit not found yet - extend with polling
+            logger.debug('Grace period expired but commit not verified - extending with polling');
+            const remainingMs = COMPLETION_HARD_MAX_MS - COMPLETION_GRACE_PERIOD_MS;
+            hardMaxHandle = setTimeout(() => {
+                logger.warn('Hard maximum grace period reached without commit verification - terminating Claude process');
+                if (commitPollHandle)
+                    clearInterval(commitPollHandle);
+                killFn();
+            }, remainingMs);
+            commitPollHandle = setInterval(() => {
+                if (commitContext && verifyCommit(commitContext)) {
+                    logger.debug('Commit verified during extended grace period - terminating Claude process');
+                    if (commitPollHandle)
+                        clearInterval(commitPollHandle);
+                    if (hardMaxHandle)
+                        clearTimeout(hardMaxHandle);
+                    killFn();
+                }
+            }, COMMIT_POLL_INTERVAL_MS);
+        }
+        else {
+            // No commit verification needed (FAILED marker or no context) - kill immediately
+            logger.debug('Grace period expired - terminating Claude process');
+            killFn();
+        }
+    }
+    function startGracePeriod(markerOutput) {
+        if (graceHandle)
+            return; // Already started
+        detectedMarkerIsComplete = COMPLETE_MARKER_PATTERN.test(markerOutput);
+        logger.debug('Completion marker detected - starting grace period before termination');
+        graceHandle = setTimeout(onGracePeriodExpired, COMPLETION_GRACE_PERIOD_MS);
+    }
+    function checkOutput(output) {
+        if (!graceHandle && COMPLETION_MARKER_PATTERN.test(output)) {
+            startGracePeriod(output);
+        }
+    }
+    // Start outcome file polling if path provided
+    if (outcomeFilePath) {
+        const filePath = outcomeFilePath;
+        pollHandle = setInterval(() => {
+            try {
+                if (!fs.existsSync(filePath))
+                    return;
+                const stat = fs.statSync(filePath);
+                if (stat.mtimeMs <= initialMtime)
+                    return; // File unchanged from before execution
+                const content = fs.readFileSync(filePath, 'utf-8');
+                if (COMPLETION_MARKER_PATTERN.test(content)) {
+                    startGracePeriod(content);
+                }
+            }
+            catch {
+                // Ignore read errors - file may be mid-write
+            }
+        }, OUTCOME_POLL_INTERVAL_MS);
+    }
+    function cleanup() {
+        if (graceHandle)
+            clearTimeout(graceHandle);
+        if (pollHandle)
+            clearInterval(pollHandle);
+        if (commitPollHandle)
+            clearInterval(commitPollHandle);
+        if (hardMaxHandle)
+            clearTimeout(hardMaxHandle);
+    }
+    return { checkOutput, cleanup };
+}
 export class ClaudeRunner {
     activeProcess = null;
     killed = false;
@@ -116,7 +258,7 @@ export class ClaudeRunner {
      * - Default timeout is 60 minutes if not specified
      */
     async run(prompt, options = {}) {
-        const { timeout = 60, cwd = process.cwd() } = options;
+        const { timeout = 60, cwd = process.cwd(), outcomeFilePath, commitContext } = options;
         // Ensure timeout is a positive number, fallback to 60 minutes
         const validatedTimeout = Number(timeout) > 0 ? Number(timeout) : 60;
         const timeoutMs = validatedTimeout * 60 * 1000;
@@ -153,10 +295,14 @@ export class ClaudeRunner {
                 logger.warn('Claude session timed out');
                 proc.kill('SIGTERM');
             }, timeoutMs);
+            // Set up completion detection (stdout marker + outcome file polling)
+            const completionDetector = createCompletionDetector(() => proc.kill('SIGTERM'), outcomeFilePath, commitContext);
             // Collect stdout
             proc.stdout.on('data', (data) => {
                 const text = data.toString();
                 output += text;
+                // Check for completion marker to start grace period
+                completionDetector.checkOutput(output);
                 // Check for context overflow
                 for (const pattern of CONTEXT_OVERFLOW_PATTERNS) {
                     if (pattern.test(text)) {
@@ -173,6 +319,7 @@ export class ClaudeRunner {
             });
             proc.on('close', (exitCode) => {
                 clearTimeout(timeoutHandle);
+                completionDetector.cleanup();
                 this.activeProcess = null;
                 if (stderr) {
                     logger.debug(`Claude stderr: ${stderr}`);
@@ -188,7 +335,8 @@ export class ClaudeRunner {
     }
     /**
      * Run Claude non-interactively with verbose output to stdout.
-     * Uses child_process.spawn with -p flag for prompt (like ralphy).
+     * Uses --output-format stream-json --verbose to get real-time streaming
+     * of tool calls, file operations, and thinking steps.
      *
      * TIMEOUT BEHAVIOR:
      * - The timeout is applied per individual call to this method
@@ -198,7 +346,7 @@ export class ClaudeRunner {
      * - Default timeout is 60 minutes if not specified
      */
     async runVerbose(prompt, options = {}) {
-        const { timeout = 60, cwd = process.cwd() } = options;
+        const { timeout = 60, cwd = process.cwd(), outcomeFilePath, commitContext } = options;
         // Ensure timeout is a positive number, fallback to 60 minutes
         const validatedTimeout = Number(timeout) > 0 ? Number(timeout) : 60;
         const timeoutMs = validatedTimeout * 60 * 1000;
@@ -208,12 +356,12 @@ export class ClaudeRunner {
             let timedOut = false;
             let contextOverflow = false;
             const claudePath = getClaudePath();
-            logger.debug(`Starting Claude execution session (verbose) with model: ${this.model}`);
+            logger.debug(`Starting Claude execution session (verbose/stream-json) with model: ${this.model}`);
             logger.debug(`Prompt length: ${prompt.length}, timeout: ${timeoutMs}ms, cwd: ${cwd}`);
             logger.debug(`Claude path: ${claudePath}`);
             logger.debug('Spawning process...');
-            // Use --append-system-prompt to add RAF instructions to system prompt
-            // This gives RAF instructions stronger precedence than passing as user message
+            // Use --output-format stream-json --verbose to get real-time streaming events
+            // including tool calls, file operations, and intermediate output.
             // --dangerously-skip-permissions bypasses interactive prompts
             // -p enables print mode (non-interactive)
             const proc = spawn(claudePath, [
@@ -222,6 +370,9 @@ export class ClaudeRunner {
                 this.model,
                 '--append-system-prompt',
                 prompt,
+                '--output-format',
+                'stream-json',
+                '--verbose',
                 '-p',
                 'Execute the task as described in the system prompt.',
             ], {
@@ -238,23 +389,39 @@ export class ClaudeRunner {
                 logger.warn('Claude session timed out');
                 proc.kill('SIGTERM');
             }, timeoutMs);
-            // Collect and display stdout
+            // Set up completion detection (stdout marker + outcome file polling)
+            const completionDetector = createCompletionDetector(() => proc.kill('SIGTERM'), outcomeFilePath, commitContext);
+            // Buffer for incomplete NDJSON lines (data chunks may split across line boundaries)
+            let lineBuffer = '';
             let dataReceived = false;
             proc.stdout.on('data', (data) => {
                 if (!dataReceived) {
                     logger.debug('First data chunk received');
                     dataReceived = true;
                 }
-                const text = data.toString();
-                output += text;
-                process.stdout.write(text);
-                // Check for context overflow
-                for (const pattern of CONTEXT_OVERFLOW_PATTERNS) {
-                    if (pattern.test(text)) {
-                        contextOverflow = true;
-                        logger.warn('Context overflow detected');
-                        proc.kill('SIGTERM');
-                        break;
+                lineBuffer += data.toString();
+                // Process complete lines from the NDJSON stream
+                let newlineIndex;
+                while ((newlineIndex = lineBuffer.indexOf('\n')) !== -1) {
+                    const line = lineBuffer.substring(0, newlineIndex);
+                    lineBuffer = lineBuffer.substring(newlineIndex + 1);
+                    const { display, textContent } = renderStreamEvent(line);
+                    if (textContent) {
+                        output += textContent;
+                        // Check for completion marker to start grace period
+                        completionDetector.checkOutput(output);
+                        // Check for context overflow
+                        for (const pattern of CONTEXT_OVERFLOW_PATTERNS) {
+                            if (pattern.test(textContent)) {
+                                contextOverflow = true;
+                                logger.warn('Context overflow detected');
+                                proc.kill('SIGTERM');
+                                break;
+                            }
+                        }
+                    }
+                    if (display) {
+                        process.stdout.write(display);
                     }
                 }
             });
@@ -263,7 +430,18 @@ export class ClaudeRunner {
                 stderr += data.toString();
             });
             proc.on('close', (exitCode) => {
+                // Process any remaining data in the line buffer
+                if (lineBuffer.trim()) {
+                    const { display, textContent } = renderStreamEvent(lineBuffer);
+                    if (textContent) {
+                        output += textContent;
+                    }
+                    if (display) {
+                        process.stdout.write(display);
+                    }
+                }
                 clearTimeout(timeoutHandle);
+                completionDetector.cleanup();
                 this.activeProcess = null;
                 logger.debug(`Claude exited with code ${exitCode}, output length: ${output.length}, timedOut: ${timedOut}, contextOverflow: ${contextOverflow}`);
                 if (stderr) {

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package/dist/core/git.d.ts

@@ -6,7 +6,7 @@ export interface GitStatus {
 /**
  * Check if we're in a git repository.
  */
-export declare function isGitRepo(): boolean;
+export declare function isGitRepo(cwd?: string): boolean;
 /**
  * Get current git status.
  */
@@ -14,7 +14,7 @@ export declare function getGitStatus(): GitStatus;
 /**
  * Check if there are uncommitted changes.
  */
-export declare function hasUncommittedChanges(): boolean;
+export declare function hasUncommittedChanges(cwd?: string): boolean;
 /**
  * Parse git status --porcelain output into a list of file paths.
  * Format: XY filename (where X is index status, Y is working tree status)
@@ -35,16 +35,40 @@ export declare function parseGitStatus(output: string): string[];
 export declare function getChangedFiles(): string[];
 /**
  * Stash uncommitted changes with a descriptive name.
- * @param name - Name for the stash (e.g., "raf-001-task-3-failed")
+ * @param name - Name for the stash (e.g., "raf-001-task-03-failed")
  * @returns true if stash was created, false otherwise
  */
-export declare function stashChanges(name: string): boolean;
+export declare function stashChanges(name: string, cwd?: string): boolean;
+/**
+ * Get the current HEAD commit hash.
+ * Returns null if not in a git repo or HEAD doesn't exist.
+ */
+export declare function getHeadCommitHash(cwd?: string): string | null;
+/**
+ * Get the current HEAD commit message (first line only).
+ * Returns null if not in a git repo or HEAD doesn't exist.
+ */
+export declare function getHeadCommitMessage(): string | null;
+/**
+ * Check if a file is tracked in the HEAD commit.
+ * Returns true if the file appears in the latest commit's tree.
+ */
+export declare function isFileCommittedInHead(filePath: string): boolean;
 /**
  * Commit planning artifacts (input.md and decisions.md) for a project.
  * Uses commit message format: RAF[NNN] Plan: project-name
+ * For amendments: RAF[NNN] Amend: project-name
  *
  * @param projectPath - Full path to the project folder (e.g., /path/to/RAF/017-decision-vault)
+ * @param options - Optional settings
+ * @param options.cwd - Working directory for git commands (worktree support)
+ * @param options.additionalFiles - Extra file paths to stage (e.g., plan files for amend)
+ * @param options.isAmend - Use "Amend:" prefix instead of "Plan:" in commit message
  * @returns Promise that resolves when commit is complete (or fails silently)
  */
-export declare function commitPlanningArtifacts(projectPath: string): Promise<void>;
+export declare function commitPlanningArtifacts(projectPath: string, options?: {
+    cwd?: string;
+    additionalFiles?: string[];
+    isAmend?: boolean;
+}): Promise<void>;
 //# sourceMappingURL=git.d.ts.map

package/dist/core/git.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"git.d.ts","sourceRoot":"","sources":["../../src/core/git.ts"],"names":[],"mappings":"AAKA,MAAM,WAAW,SAAS;IACxB,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,EAAE,OAAO,CAAC;IACpB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACvB;AAED;;GAEG;AACH,wBAAgB,SAAS,IAAI,OAAO,CAOnC;AAED;;GAEG;AACH,wBAAgB,YAAY,IAAI,SAAS,CA6BxC;AAED;;GAEG;AACH,wBAAgB,qBAAqB,IAAI,OAAO,CAO/C;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,CAyCvD;AAED;;;GAGG;AACH,wBAAgB,eAAe,IAAI,MAAM,EAAE,CAW1C;AAED;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAqBlD;AAED;;;;;;GAMG;AACH,wBAAsB,uBAAuB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA4DhF"}
+{"version":3,"file":"git.d.ts","sourceRoot":"","sources":["../../src/core/git.ts"],"names":[],"mappings":"AAKA,MAAM,WAAW,SAAS;IACxB,MAAM,EAAE,OAAO,CAAC;IAChB,UAAU,EAAE,OAAO,CAAC;IACpB,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;CACvB;AAED;;GAEG;AACH,wBAAgB,SAAS,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAO/C;AAED;;GAEG;AACH,wBAAgB,YAAY,IAAI,SAAS,CA6BxC;AAED;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAO3D;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,EAAE,CAyCvD;AAED;;;GAGG;AACH,wBAAgB,eAAe,IAAI,MAAM,EAAE,CAW1C;AAED;;;;GAIG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,OAAO,CAsBhE;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,CAAC,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAM7D;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,IAAI,MAAM,GAAG,IAAI,CAMpD;AAED;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAc/D;AAED;;;;;;;;;;;GAWG;AACH,wBAAsB,uBAAuB,CAAC,WAAW,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE;IAAE,GAAG,CAAC,EAAE,MAAM,CAAC;IAAC,eAAe,CAAC,EAAE,MAAM,EAAE,CAAC;IAAC,OAAO,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA0F3J"}

package/dist/core/git.js

@@ -5,9 +5,9 @@ import { extractProjectNumber, extractProjectName } from '../utils/paths.js';
 /**
  * Check if we're in a git repository.
  */
-export function isGitRepo() {
+export function isGitRepo(cwd) {
     try {
-        execSync('git rev-parse --is-inside-work-tree', { encoding: 'utf-8', stdio: 'pipe' });
+        execSync('git rev-parse --is-inside-work-tree', { encoding: 'utf-8', stdio: 'pipe', ...(cwd ? { cwd } : {}) });
         return true;
     }
     catch {
@@ -49,9 +49,9 @@ export function getGitStatus() {
 /**
  * Check if there are uncommitted changes.
  */
-export function hasUncommittedChanges() {
+export function hasUncommittedChanges(cwd) {
     try {
-        const status = execSync('git status --porcelain', { encoding: 'utf-8', stdio: 'pipe' });
+        const status = execSync('git status --porcelain', { encoding: 'utf-8', stdio: 'pipe', ...(cwd ? { cwd } : {}) });
         return status.trim().length > 0;
     }
     catch {
@@ -123,15 +123,15 @@ export function getChangedFiles() {
 }
 /**
  * Stash uncommitted changes with a descriptive name.
- * @param name - Name for the stash (e.g., "raf-001-task-3-failed")
+ * @param name - Name for the stash (e.g., "raf-001-task-03-failed")
  * @returns true if stash was created, false otherwise
  */
-export function stashChanges(name) {
-    if (!isGitRepo()) {
+export function stashChanges(name, cwd) {
+    if (!isGitRepo(cwd)) {
         logger.warn('Not in a git repository, skipping stash');
         return false;
     }
-    if (!hasUncommittedChanges()) {
+    if (!hasUncommittedChanges(cwd)) {
         logger.debug('No uncommitted changes to stash');
         return false;
     }
@@ -139,6 +139,7 @@ export function stashChanges(name) {
         execSync(`git stash push -m "${name.replace(/"/g, '\\"')}"`, {
             encoding: 'utf-8',
             stdio: 'pipe',
+            ...(cwd ? { cwd } : {}),
         });
         return true;
     }
@@ -147,16 +148,66 @@ export function stashChanges(name) {
         return false;
     }
 }
+/**
+ * Get the current HEAD commit hash.
+ * Returns null if not in a git repo or HEAD doesn't exist.
+ */
+export function getHeadCommitHash(cwd) {
+    try {
+        return execSync('git rev-parse HEAD', { encoding: 'utf-8', stdio: 'pipe', ...(cwd ? { cwd } : {}) }).trim() || null;
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Get the current HEAD commit message (first line only).
+ * Returns null if not in a git repo or HEAD doesn't exist.
+ */
+export function getHeadCommitMessage() {
+    try {
+        return execSync('git log -1 --format=%s', { encoding: 'utf-8', stdio: 'pipe' }).trim() || null;
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Check if a file is tracked in the HEAD commit.
+ * Returns true if the file appears in the latest commit's tree.
+ */
+export function isFileCommittedInHead(filePath) {
+    try {
+        // Use git ls-tree to check if the file exists in HEAD
+        // We need the path relative to the repo root
+        const repoRoot = execSync('git rev-parse --show-toplevel', { encoding: 'utf-8', stdio: 'pipe' }).trim();
+        const relativePath = path.relative(repoRoot, path.resolve(filePath));
+        const result = execSync(`git ls-tree HEAD -- "${relativePath.replace(/"/g, '\\"')}"`, {
+            encoding: 'utf-8',
+            stdio: 'pipe',
+        }).trim();
+        return result.length > 0;
+    }
+    catch {
+        return false;
+    }
+}
 /**
  * Commit planning artifacts (input.md and decisions.md) for a project.
  * Uses commit message format: RAF[NNN] Plan: project-name
+ * For amendments: RAF[NNN] Amend: project-name
  *
  * @param projectPath - Full path to the project folder (e.g., /path/to/RAF/017-decision-vault)
+ * @param options - Optional settings
+ * @param options.cwd - Working directory for git commands (worktree support)
+ * @param options.additionalFiles - Extra file paths to stage (e.g., plan files for amend)
+ * @param options.isAmend - Use "Amend:" prefix instead of "Plan:" in commit message
  * @returns Promise that resolves when commit is complete (or fails silently)
  */
-export async function commitPlanningArtifacts(projectPath) {
+export async function commitPlanningArtifacts(projectPath, options) {
+    const execCwd = options?.cwd;
     // Check if we're in a git repository
-    if (!isGitRepo()) {
+    if (!isGitRepo(execCwd)) {
         logger.warn('Not in a git repository, skipping planning artifacts commit');
         return;
     }
@@ -167,22 +218,47 @@ export async function commitPlanningArtifacts(projectPath) {
         logger.warn('Could not extract project number or name from path, skipping commit');
         return;
     }
-    // Build file paths relative to the project folder
+    // Build absolute file paths
     const inputFile = path.join(projectPath, 'input.md');
     const decisionsFile = path.join(projectPath, 'decisions.md');
     // Build commit message
-    const commitMessage = `RAF[${projectNumber}] Plan: ${projectName}`;
+    const prefix = options?.isAmend ? 'Amend' : 'Plan';
+    const commitMessage = `RAF[${projectNumber}] ${prefix}: ${projectName}`;
+    // Build list of files to stage (absolute paths)
+    const absoluteFiles = [inputFile, decisionsFile, ...(options?.additionalFiles ?? [])];
+    // Convert to relative paths when cwd is provided (worktree mode).
+    // Git resolves paths relative to the working directory. Using relative paths
+    // avoids issues with symlink resolution (e.g., /tmp → /private/tmp on macOS)
+    // that can cause absolute paths to not match git's internal worktree paths.
+    const filesToStage = execCwd
+        ? absoluteFiles.map(f => path.relative(execCwd, f))
+        : absoluteFiles;
+    // Stage each file individually so one missing file doesn't block the others
+    let stagedCount = 0;
+    for (const file of filesToStage) {
+        try {
+            execSync(`git add -- "${file}"`, {
+                encoding: 'utf-8',
+                stdio: 'pipe',
+                ...(execCwd ? { cwd: execCwd } : {}),
+            });
+            stagedCount++;
+        }
+        catch (error) {
+            const msg = error instanceof Error ? error.message : String(error);
+            logger.warn(`Failed to stage ${file}: ${msg}`);
+        }
+    }
+    if (stagedCount === 0) {
+        logger.debug('No files were staged for planning artifacts commit');
+        return;
+    }
     try {
-        // Stage only the specific files (input.md and decisions.md)
-        // Use --force to add even if in .gitignore, and -- to handle paths with special chars
-        execSync(`git add -- "${inputFile}" "${decisionsFile}"`, {
-            encoding: 'utf-8',
-            stdio: 'pipe',
-        });
         // Check if there's anything staged to commit
         const stagedStatus = execSync('git diff --cached --name-only', {
             encoding: 'utf-8',
             stdio: 'pipe',
+            ...(execCwd ? { cwd: execCwd } : {}),
         }).trim();
         if (!stagedStatus) {
             logger.debug('No changes to planning artifacts to commit');
@@ -192,6 +268,7 @@ export async function commitPlanningArtifacts(projectPath) {
         execSync(`git commit -m "${commitMessage.replace(/"/g, '\\"')}"`, {
             encoding: 'utf-8',
             stdio: 'pipe',
+            ...(execCwd ? { cwd: execCwd } : {}),
         });
         logger.debug(`Committed planning artifacts: ${commitMessage}`);
     }

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@@ -1 +1 @@
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package/dist/core/project-manager.d.ts.map

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