qiongli 1.6.0 → 1.7.0

package/README.md

@@ -88,7 +88,9 @@ Advanced bridge commands such as `setup`, `doctor`, `task-run`, and `team-run` u
 
 ## MCP server
 
-Native Codex and Claude Code plugins can bundle the zero-dependency Node literature-provider MCP runtime for provider, status, and search tools. npm, pipx/pip, or bootstrap `full` remains the path for the Python-backed full CLI MCP server and orchestration tools.
+`qiongli mcp serve --transport stdio` is the unified full CLI MCP server. It exposes literature provider tools plus orchestrator and task-run tools from one server. The zero-dependency Node literature-provider MCP bundled by plugins remains a marketplace/MCPB fallback for environments that cannot run the full CLI.
+
+The Python CLI path (`qiongli install --profile full --target codex`) performs managed Codex MCP registration for the unified server. The npm asset installer stays conservative: explicit npm installs can report MCP guidance with `qiongli install --parts globals,mcp --dry-run`, but they do not rewrite client MCP config.
 
 The npm launcher also delegates MCP commands to the bundled Python bridge:
 
@@ -100,9 +102,13 @@ qiongli mcp config example --target claude-code --json
 qiongli mcp config example --target hermes --json
 ```
 
-The full CLI MCP server exposes provider tools plus orchestrator tools:
+The full CLI MCP server exposes literature tools plus orchestrator tools:
 
+- `qiongli_literature_status`
+- `qiongli_literature_search`
+- `qiongli_literature_export_evidence`
 - `qiongli_orchestrator_doctor`
+- `qiongli_orchestrator_route`
 - `qiongli_task_plan`
 - `qiongli_task_run`
 

package/lib/cli.mjs

@@ -41,6 +41,7 @@ export async function main(argv, {
         dryRun: parsed.options.dryRun,
         subject: parsed.options.subject,
         coverage: parsed.options.coverage,
+        parts: parsed.options.parts,
       });
     } catch (error) {
       stderr.write(`[qiongli] ${error.message}\n`);
@@ -177,6 +178,7 @@ Options:
   --subject core|economics|accounting|business|finance|economics-accounting
   --coverage complete|focused
   --mode copy|link
+  --parts globals,project,cli,mcp
   --overwrite
   --dry-run
   --no-doctor

package/lib/installer.mjs

@@ -3,7 +3,7 @@ import os from 'node:os';
 import path from 'node:path';
 
 const TARGETS = ['codex', 'claude', 'antigravity', 'hermes'];
-const PARTS = ['globals', 'project', 'cli'];
+const PARTS = ['globals', 'project', 'cli', 'mcp'];
 const LEGACY_SKILL_NAME = 'research-paper-workflow';
 
 export function resolveTargetPaths({ env = process.env } = {}) {
@@ -65,6 +65,7 @@ export function installSkills({
   dryRun = false,
   subject = 'core',
   coverage = 'complete',
+  parts = '',
   env = process.env,
   platform = process.platform,
 } = {}) {
@@ -80,22 +81,31 @@ export function installSkills({
   const sourceCoverage = readSkillCoverage(workflowSrc) || coverage;
   const actions = [];
   const legacyResidues = [];
+  const selectedParts = normalizeParts(parts);
+  const installGlobals = !selectedParts || selectedParts.includes('globals');
+  const installMcp = selectedParts?.includes('mcp') || false;
 
-  for (const item of selectedTargets) {
-    const dest = targetPaths[item];
-    const legacyPath = path.join(path.dirname(dest), LEGACY_SKILL_NAME);
-    if (fs.existsSync(legacyPath)) {
-      const status = removeLegacySkillPath(legacyPath, LEGACY_SKILL_NAME, dryRun);
-      legacyResidues.push({ target: item, legacyName: LEGACY_SKILL_NAME, path: legacyPath, status });
-    }
+  if (installGlobals) {
+    for (const item of selectedTargets) {
+      const dest = targetPaths[item];
+      const legacyPath = path.join(path.dirname(dest), LEGACY_SKILL_NAME);
+      if (fs.existsSync(legacyPath)) {
+        const status = removeLegacySkillPath(legacyPath, LEGACY_SKILL_NAME, dryRun);
+        legacyResidues.push({ target: item, legacyName: LEGACY_SKILL_NAME, path: legacyPath, status });
+      }
 
-    actions.push(copySkill({ src: workflowSrc, dest, mode, overwrite, dryRun, sourceVersion, sourceSubject, sourceCoverage }));
+      actions.push(copySkill({ src: workflowSrc, dest, mode, overwrite, dryRun, sourceVersion, sourceSubject, sourceCoverage }));
 
-    if (item === 'claude' && actions.at(-1).status !== 'skip') {
-      actions.push(...installWorkflowDiscovery({ target: item, skillDest: dest, dryRun, platform }));
+      if (item === 'claude' && actions.at(-1).status !== 'skip') {
+        actions.push(...installWorkflowDiscovery({ target: item, skillDest: dest, dryRun, platform }));
+      }
     }
   }
 
+  if (installMcp) {
+    actions.push(mcpGuidanceAction({ dryRun }));
+  }
+
   return { sourceVersion, sourceSubject, sourceCoverage, actions, legacyResidues, targetPaths };
 }
 
@@ -196,6 +206,15 @@ export function removeAssets({
     actions.push({ label: 'CLI', status: 'skip', path: '<npm package>', detail: 'remove with npm uninstall -g qiongli' });
   }
 
+  if (selectedParts.includes('mcp')) {
+    actions.push({
+      label: 'MCP',
+      status: 'manual',
+      path: '<client config>',
+      detail: 'Use qiongli remove --parts mcp through the Python CLI to remove managed MCP config',
+    });
+  }
+
   return { actions };
 }
 
@@ -378,6 +397,15 @@ function installWorkflowDiscovery({ target, skillDest, dryRun, platform }) {
   return actions;
 }
 
+function mcpGuidanceAction({ dryRun }) {
+  return {
+    label: 'MCP',
+    status: dryRun ? 'dry-run' : 'manual',
+    path: '<client config>',
+    detail: 'Use qiongli mcp serve --transport stdio as the unified full MCP server',
+  };
+}
+
 function removeWorkflowDiscovery({ target, skillDest, dryRun }) {
   if (target !== 'claude') {
     return [];

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "qiongli",
-  "version": "1.6.0",
+  "version": "1.7.0",
   "description": "Qiongli academic research workflow installer and optional Python bridge runtime.",
   "author": {
     "name": "Jiaxin Peng",

package/payload/qiongli-workflow/SKILL.md

@@ -1,6 +1,6 @@
 ---
 name: qiongli
-description: Qiongli version: v1.6.0. Cross-platform academic research workflow for Codex, Claude / Claude Code, and CLI. Use for academic research lifecycle work: paper planning, literature review, paper reading, gap finding, study design, manuscript writing, statistics, analysis code, reproducibility, proofread, rebuttal, submission, presentation, and stage-aware grill / critique. Route natural academic requests even when the user does not explicitly invoke $qiongli or a slash command.
+description: Qiongli version: v1.7.0. Cross-platform academic research workflow for Codex, Claude / Claude Code, and CLI. Use for academic research lifecycle work: paper planning, literature review, paper reading, gap finding, study design, manuscript writing, statistics, analysis code, reproducibility, proofread, rebuttal, submission, presentation, and stage-aware grill / critique. Route natural academic requests even when the user does not explicitly invoke $qiongli or a slash command.
 ---
 
 # Qiongli Academic Workflow
@@ -9,7 +9,7 @@ Run a model-agnostic paper workflow using shared Task IDs and artifact contracts
 
 This is a **self-contained skill package**. All assets needed for execution — workflows, skill specifications, output templates, standards, and agent roles — are bundled in subdirectories of this package. No external repo access is needed.
 
-Installed Qiongli workflow version: `v1.6.0`
+Installed Qiongli workflow version: `v1.7.0`
 
 ## Quick Start
 

package/payload/qiongli-workflow/VERSION

@@ -1 +1 @@
-v1.6.0
+v1.7.0