qfai 2.1.1 → 2.2.0

package/dist/graph/cli.cjs.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../../src/cli/graphCli.ts","../../src/core/graph/codePreparation.ts","../../src/shared/assets.ts","../../src/core/graph/process.ts","../../src/core/graph/layout.ts","../../src/core/graph/storage.ts","../../src/core/fs/errno.ts","../../src/core/graph/reuse.ts","../../src/core/graph/analysis.ts","../../src/core/graph/documents.ts","../../src/core/graph/documentReuse.ts","../../src/core/graph/locks.ts","../../src/core/graph/localFiles.ts","../../src/core/init/fsGuards.ts","../../src/core/graph/query.ts","../../src/core/graph/runner.ts","../../src/core/graph/fallbackState.ts","../../src/core/graph/permissionRecords.ts"],"sourcesContent":["import { queryPreparedGraph } from \"../core/graph/runner.js\";\nimport { runGraphProcess, type GraphProcess } from \"../core/graph/process.js\";\nimport type { GraphQuestion } from \"../core/graph/query.js\";\nimport { requestStoredGraphFallback } from \"../core/graph/fallbackState.js\";\nimport { GRAPH_UUID, graphStateText, GraphLocalStateError } from \"../core/graph/localFiles.js\";\n\nexport interface GraphCliIO {\n  output(text: string): void;\n  fail(): void;\n}\n\nconst QUERY_USAGE =\n  'Run node .qfai/tools/graph-cli.mjs code \"<question>\" or documents \"<question>\". For a denied search, run node .qfai/tools/graph-cli.mjs fallback --attempt-id <observed-UUID> --question \"<unresolved question>\" --reason \"<graph limitation>\". Supply only the listed arguments.';\n\nexport async function runInstalledGraphCli(\n  root: string,\n  args: string[],\n  io: GraphCliIO = {\n    output: (text) => {\n      process.stdout.write(text);\n    },\n    fail: () => {\n      process.exitCode = 2;\n    },\n  },\n  run: GraphProcess = runGraphProcess,\n): Promise<void> {\n  const request = args[0] === \"fallback\" ? readFallback(args) : readQuestion(args);\n  if (!request) {\n    io.output(\n      JSON.stringify({\n        status: \"failed\",\n        ...(args[0] === \"fallback\" ? { permitted: false } : {}),\n        failure: \"Invalid graph command arguments.\",\n        recovery: QUERY_USAGE,\n      }) + \"\\n\",\n    );\n    io.fail();\n    return;\n  }\n  let answer;\n  try {\n    answer =\n      \"attemptId\" in request\n        ? await requestStoredGraphFallback(\n            root,\n            request.attemptId,\n            request.question,\n            request.reason,\n            run,\n          )\n        : await queryPreparedGraph(root, request, run);\n  } catch (cause: unknown) {\n    const fallback = \"attemptId\" in request;\n    answer = {\n      status: \"failed\",\n      permitted: false,\n      failure:\n        cause instanceof GraphLocalStateError\n          ? cause.message\n          : fallback\n            ? \"Search fallback failed.\"\n            : \"Graph operation failed.\",\n      recovery:\n        cause instanceof GraphLocalStateError\n          ? cause.recovery\n          : fallback\n            ? \"Retain .qfai/tools/state and local analysis, repair project-local graph preparation, then retry the same fallback CLI command.\"\n            : \"Repair project-local graph preparation and retry the same CLI command.\",\n    };\n  }\n  io.output(JSON.stringify(answer) + \"\\n\");\n  if (answer.status === \"failed\" || answer.status === \"not-ready\") io.fail();\n}\n\nfunction readFallback(\n  args: string[],\n): { attemptId: string; question: string; reason: string } | undefined {\n  if (args.length !== 7) return undefined;\n  const values = new Map<string, string>();\n  for (let index = 1; index < args.length; index += 2) {\n    const flag = args[index];\n    const value = args[index + 1]?.trim();\n    if (\n      !flag ||\n      ![\"--attempt-id\", \"--question\", \"--reason\"].includes(flag) ||\n      values.has(flag) ||\n      !value ||\n      value.startsWith(\"--\")\n    )\n      return undefined;\n    values.set(flag, value);\n  }\n  const attemptId = values.get(\"--attempt-id\");\n  const question = values.get(\"--question\");\n  const reason = values.get(\"--reason\");\n  if (\n    !attemptId ||\n    !GRAPH_UUID.test(attemptId) ||\n    !graphStateText(question, 16384) ||\n    !graphStateText(reason, 2048)\n  )\n    return undefined;\n  return { attemptId, question, reason };\n}\n\nfunction readQuestion(args: string[]): GraphQuestion | undefined {\n  const domain = args[0];\n  const question = args[1]?.trim();\n  if (\n    (domain !== \"code\" && domain !== \"documents\") ||\n    args.length !== 2 ||\n    !question ||\n    question.length > 16384 ||\n    question.includes(\"\\0\") ||\n    question.startsWith(\"--\")\n  )\n    return undefined;\n  return { domain, question };\n}\n","import { randomUUID } from \"node:crypto\";\nimport { mkdir, rm } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { getInitAssetsDir } from \"../../shared/assets.js\";\nimport { codegraphEnvironment, type GraphProcess } from \"./process.js\";\nimport {\n  publishCompletedCodeAnalysis,\n  restoreCompletedCodeAnalysis,\n  type GraphReuseEnvironment,\n} from \"./reuse.js\";\nimport { graphAnalysisRoot, graphRuntimePaths } from \"./layout.js\";\nimport {\n  inspectCodeAnalysisAt,\n  inspectCurrentCodeAnalysis,\n  mirrorGraphCorpus,\n} from \"./analysis.js\";\nimport {\n  assertGraphStoragePath,\n  assertIndependentAnalysis,\n  replaceGraphDirectory,\n} from \"./storage.js\";\n\nexport interface CodePreparation {\n  status: \"prepared\" | \"failed\";\n  source?: \"generated\" | \"restored\" | \"current\";\n  recovery?: string;\n  reuse?: \"published\" | \"unavailable\";\n}\n\nexport async function prepareCodeAnalysis(\n  root: string,\n  run: GraphProcess,\n  environment?: GraphReuseEnvironment,\n): Promise<CodePreparation> {\n  const current = graphAnalysisRoot(root, \"codegraph\");\n  const staged = path.join(path.dirname(current), `.preparing-codegraph-${randomUUID()}`);\n  let created = false;\n  try {\n    if (await inspectCurrentCodeAnalysis(root, run))\n      return { status: \"prepared\", source: \"current\" };\n    if ((await restoreCompletedCodeAnalysis(root, run, environment)) === \"restored\")\n      return { status: \"prepared\", source: \"restored\" };\n    await assertGraphStoragePath(root, staged);\n    await mkdir(staged, { recursive: true });\n    created = true;\n    await mirrorGraphCorpus(root, staged);\n    const runtime = graphRuntimePaths(root);\n    const result = await run(\n      runtime.codegraphNode,\n      [\n        \"--liftoff-only\",\n        path.resolve(getInitAssetsDir(), \"..\", \"graph\", \"codegraph-native.mjs\"),\n        runtime.codegraphSdk,\n        staged,\n      ],\n      { cwd: staged, env: codegraphEnvironment(root) },\n    );\n    if (result.exitCode !== 0 || !(await inspectCodeAnalysisAt(root, staged, run))) return failed();\n    await assertIndependentAnalysis(staged);\n    await replaceGraphDirectory(staged, current, root);\n    return {\n      status: \"prepared\",\n      source: \"generated\",\n      reuse: await publishCompletedCodeAnalysis(root, run, environment),\n    };\n  } catch {\n    return failed();\n  } finally {\n    if (created) await rm(staged, { recursive: true, force: true });\n  }\n}\n\nfunction failed(): CodePreparation {\n  return {\n    status: \"failed\",\n    recovery: \"Repair the local CodeGraph runtime and prepare independent analysis.\",\n  };\n}\n","import { existsSync } from \"node:fs\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\n\n/**\n * `assets/init` candidates for a module sitting at `baseDir`.\n *\n * Three depths, because this module is loaded from three: `src/shared/` and\n * `dist/shared/` are two levels below the package root, and `dist/index.mjs` —\n * the package's public entry, which `tsup` produces with `splitting: false`, so\n * this code is bundled into it — is one. Without the one-level candidate every\n * caller that reaches `validateProject` through the library entry rather than\n * the CLI got `Template assets not found` before any validator ran.\n *\n * **Ordered nearest-first**, because the shallower depths are not the\n * package's own directory once QFAI is installed: from\n * `<project>/node_modules/qfai/dist`, the three-level candidate is\n * `<project>/assets/init`. A consuming project with an unrelated `assets/init`\n * would otherwise be picked as the template root, and a wrong-but-present\n * directory is worse than a missing one — `canonicalSkillIds` would read an\n * empty shipped roster and `QFAI-LINK-001` would pass every broken wrapper\n * without looking at it.\n *\n * Exported for the test that pins those depths; `getInitAssetsDir` is the API.\n */\nexport function initAssetsCandidates(baseDir: string): string[] {\n  return [\n    path.resolve(baseDir, \"../assets/init\"),\n    path.resolve(baseDir, \"../../assets/init\"),\n    path.resolve(baseDir, \"../../../assets/init\"),\n  ];\n}\n\n/**\n * Files a real `assets/init` tree always has.\n *\n * Existence alone does not identify the directory — the name is generic enough\n * that a consuming project can have one. Both halves of the tree `runInit`\n * copies are required, so an unrelated `assets/init` is rejected and the search\n * continues instead of silently rooting the whole template system somewhere\n * arbitrary.\n */\nconst INIT_ASSETS_SENTINELS = [\n  path.join(\".qfai\", \"assistant\"),\n  path.join(\"root\", \"qfai.config.yaml\"),\n];\n\nfunction isInitAssetsDir(candidate: string): boolean {\n  return INIT_ASSETS_SENTINELS.every((sentinel) => existsSync(path.join(candidate, sentinel)));\n}\n\nexport function getInitAssetsDir(): string {\n  const base = import.meta.url;\n  const basePath = base.startsWith(\"file:\") ? fileURLToPath(base) : base;\n  const baseDir = path.dirname(basePath);\n  const candidates = initAssetsCandidates(baseDir);\n\n  for (const candidate of candidates) {\n    if (isInitAssetsDir(candidate)) {\n      return candidate;\n    }\n  }\n\n  throw new Error(\n    [\n      \"Template assets for init were not found.\",\n      \"Checked paths:\",\n      ...candidates.map((candidate) => `- ${candidate}`),\n    ].join(\"\\n\"),\n  );\n}\n","import { execFile } from \"node:child_process\";\nimport { access, lstat, realpath } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { promisify } from \"node:util\";\nimport {\n  graphEnvironmentKey,\n  graphExecutionEnvironment,\n  type GraphExecutionEnvironment,\n} from \"./layout.js\";\nimport { assertGraphStoragePath } from \"./storage.js\";\nimport { isEnoent } from \"../fs/errno.js\";\n\nconst execute = promisify(execFile);\nexport const GRAPH_PYTHON_FLAGS = [\"-I\", \"-X\", \"utf8\"] as const;\n\nexport interface GraphProcessResult {\n  exitCode: number;\n  stdout: string;\n}\n\nexport type GraphProcess = (\n  command: string,\n  args: readonly string[],\n  options: { cwd: string; env?: NodeJS.ProcessEnv; timeoutMs?: number; maxBufferBytes?: number },\n) => Promise<GraphProcessResult>;\n\nfunction privateEngineEnvironment(\n  root: string,\n  engine: \"codegraph\" | \"graphify\",\n  execution: GraphExecutionEnvironment,\n): NodeJS.ProcessEnv {\n  const environment: NodeJS.ProcessEnv = {};\n  const allowed: Record<string, string> = {\n    path: \"PATH\",\n    systemroot: \"SystemRoot\",\n    windir: \"WINDIR\",\n    comspec: \"ComSpec\",\n    pathext: \"PATHEXT\",\n    tmp: \"TMP\",\n    temp: \"TEMP\",\n    lang: \"LANG\",\n    lc_all: \"LC_ALL\",\n  };\n  for (const [name, value] of Object.entries(process.env)) {\n    const canonical = allowed[name.toLowerCase()];\n    if (canonical) environment[canonical] = value;\n  }\n  const home = path.join(root, \".qfai\", \"tools\", \"home\", graphEnvironmentKey(execution), engine);\n  return {\n    ...environment,\n    HOME: home,\n    USERPROFILE: home,\n    APPDATA: path.join(home, \"AppData\", \"Roaming\"),\n    LOCALAPPDATA: path.join(home, \"AppData\", \"Local\"),\n    XDG_CONFIG_HOME: path.join(home, \".config\"),\n    XDG_CACHE_HOME: path.join(home, \".cache\"),\n    XDG_DATA_HOME: path.join(home, \".local\", \"share\"),\n    XDG_STATE_HOME: path.join(home, \".local\", \"state\"),\n  };\n}\n\nexport function graphifyEnvironment(\n  root: string,\n  environment: GraphExecutionEnvironment = graphExecutionEnvironment(),\n): NodeJS.ProcessEnv {\n  return {\n    ...privateEngineEnvironment(root, \"graphify\", environment),\n    PYTHONUTF8: \"1\",\n    PYTHONIOENCODING: \"utf-8\",\n    GRAPHIFY_QUERY_LOG_DISABLE: \"1\",\n    GRAPHIFY_OUT: \"graphify-out\",\n    GRAPHIFY_ALLOW_LOCAL_PROVIDERS: \"0\",\n    GRAPHIFY_NO_AUTO_REFRESH: \"1\",\n  };\n}\n\nexport function codegraphEnvironment(\n  root: string,\n  environment: GraphExecutionEnvironment = graphExecutionEnvironment(),\n): NodeJS.ProcessEnv {\n  const privateEnvironment = privateEngineEnvironment(root, \"codegraph\", environment);\n  const home = privateEnvironment.HOME ?? \"\";\n  return {\n    ...privateEnvironment,\n    CODEGRAPH_INSTALL_DIR: path.join(home, \".codegraph\"),\n    CODEGRAPH_NO_DOWNLOAD: \"1\",\n    CODEGRAPH_NO_UPDATE_CHECK: \"1\",\n    CODEGRAPH_TELEMETRY: \"0\",\n    CODEGRAPH_DIR: \".codegraph\",\n  };\n}\n\nexport function graphifyCorpusEnvironment(root: string, analysis: string): NodeJS.ProcessEnv {\n  return {\n    ...graphifyEnvironment(root),\n    GRAPHIFY_OUT: path.toNamespacedPath(path.join(analysis, \"graphify-out\")),\n  };\n}\n\nexport async function graphifyConfigurationSafe(root: string): Promise<boolean> {\n  const home = graphifyEnvironment(root).HOME;\n  if (!home) return false;\n  try {\n    const configuration = path.join(home, \".graphify\");\n    await assertGraphStoragePath(root, configuration);\n    await lstat(path.join(configuration, \"providers.json\"));\n    return false;\n  } catch (cause: unknown) {\n    return isEnoent(cause);\n  }\n}\n\nexport const runGraphProcess: GraphProcess = async (command, args, options) => {\n  try {\n    const result = await execute(command, [...args], {\n      cwd: options.cwd,\n      ...(options.env ? { env: options.env } : {}),\n      windowsHide: true,\n      timeout: options.timeoutMs ?? 120_000,\n      maxBuffer: options.maxBufferBytes ?? 4 * 1024 * 1024,\n    });\n    return { exitCode: 0, stdout: result.stdout };\n  } catch (cause: unknown) {\n    if (!(cause instanceof Error) || !(\"code\" in cause)) throw cause;\n    // Installation and backend stderr can contain credentials. Report the step instead.\n    return { exitCode: typeof cause.code === \"number\" ? cause.code : 1, stdout: \"\" };\n  }\n};\n\nexport async function npmCommand(): Promise<{ command: string; prefix: string[] }> {\n  const node = await realpath(process.execPath);\n  const candidates = [\n    path.join(path.dirname(node), \"node_modules\", \"npm\", \"bin\", \"npm-cli.js\"),\n    path.resolve(path.dirname(node), \"..\", \"lib\", \"node_modules\", \"npm\", \"bin\", \"npm-cli.js\"),\n  ];\n  for (const candidate of candidates) {\n    try {\n      await access(candidate);\n      return { command: process.execPath, prefix: [candidate] };\n    } catch (cause: unknown) {\n      if (!(cause instanceof Error) || !(\"code\" in cause) || cause.code !== \"ENOENT\") throw cause;\n    }\n  }\n  // POSIX npm launchers are executable scripts. Windows uses the JS entry above.\n  return { command: \"npm\", prefix: [] };\n}\n","import path from \"node:path\";\n\nexport const GRAPH_VERSIONS = { codegraph: \"1.6.2\", graphify: \"0.9.86\" } as const;\n\nexport interface GraphExecutionEnvironment {\n  platform: string;\n  architecture: string;\n}\n\nexport function graphExecutionEnvironment(): GraphExecutionEnvironment {\n  return { platform: process.platform, architecture: process.arch };\n}\n\nexport function graphEnvironmentKey(\n  environment: GraphExecutionEnvironment = graphExecutionEnvironment(),\n): string {\n  if (!/^[a-z0-9]+$/i.test(environment.platform) || !/^[a-z0-9]+$/i.test(environment.architecture))\n    throw new Error(\"Unsupported graph execution environment.\");\n  return `${environment.platform}-${environment.architecture}`;\n}\n\nexport function graphRuntimePaths(\n  root: string,\n  environment: GraphExecutionEnvironment = graphExecutionEnvironment(),\n) {\n  const directory = path.join(root, \".qfai\", \"tools\", \"runtimes\", graphEnvironmentKey(environment));\n  return {\n    directory,\n    codegraph: path.join(\n      directory,\n      \"codegraph\",\n      \"node_modules\",\n      \"@colbymchenry\",\n      \"codegraph\",\n      \"npm-shim.js\",\n    ),\n    codegraphSdk: path.join(\n      directory,\n      \"codegraph\",\n      \"node_modules\",\n      \"@colbymchenry\",\n      \"codegraph\",\n      \"npm-sdk.js\",\n    ),\n    codegraphNode: path.join(\n      directory,\n      \"codegraph\",\n      \"node_modules\",\n      \"@colbymchenry\",\n      `codegraph-${environment.platform}-${environment.architecture}`,\n      environment.platform === \"win32\" ? \"node.exe\" : \"node\",\n    ),\n    python:\n      environment.platform === \"win32\"\n        ? path.join(directory, \"graphify\", \"Scripts\", \"python.exe\")\n        : path.join(directory, \"graphify\", \"bin\", \"python\"),\n  };\n}\n\nexport function graphAnalysisRoot(\n  root: string,\n  engine: \"codegraph\" | \"graphify\" | \"graphify-code\",\n  environment: GraphExecutionEnvironment = graphExecutionEnvironment(),\n): string {\n  return path.join(root, \".qfai\", \"tools\", \"analysis\", graphEnvironmentKey(environment), engine);\n}\n","import { randomUUID } from \"node:crypto\";\nimport { lstat, mkdir, readdir, rename, rm } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { isEnoent } from \"../fs/errno.js\";\n\nexport async function assertGraphStoragePath(root: string, directory: string): Promise<void> {\n  const relative = path.relative(root, directory);\n  const parts = relative.split(path.sep);\n  if (\n    path.isAbsolute(relative) ||\n    parts[0] !== \".qfai\" ||\n    parts[1] !== \"tools\" ||\n    parts.includes(\"..\")\n  ) {\n    throw new Error(\"Graph storage must stay inside project-local .qfai/tools.\");\n  }\n  for (let depth = 1; depth <= parts.length; depth += 1) {\n    try {\n      const stats = await lstat(path.join(root, ...parts.slice(0, depth)));\n      if (stats.isSymbolicLink() || !stats.isDirectory())\n        throw new Error(\n          \"Graph storage has an unsafe path component; retain it and repair the project configuration.\",\n        );\n    } catch (cause: unknown) {\n      if (isEnoent(cause)) return;\n      throw cause;\n    }\n  }\n}\n\nexport async function assertIndependentAnalysis(directory: string): Promise<void> {\n  for (const entry of await readdir(directory, { withFileTypes: true })) {\n    const child = path.join(directory, entry.name);\n    const stats = await lstat(child);\n    if (stats.isSymbolicLink() || (stats.isFile() && stats.nlink > 1)) {\n      throw new Error(\n        \"Graph analysis contains a shared file or unsafe link; retain it and prepare an independent copy.\",\n      );\n    }\n    if (stats.isDirectory()) await assertIndependentAnalysis(child);\n  }\n}\n\nexport async function replaceGraphDirectory(\n  staged: string,\n  current: string,\n  root: string,\n): Promise<void> {\n  await assertGraphStoragePath(root, staged);\n  await assertGraphStoragePath(root, current);\n  const parent = path.dirname(current);\n  await mkdir(parent, { recursive: true });\n  const previous = path.join(parent, `.previous-${randomUUID()}`);\n  let retained = false;\n  try {\n    await rename(current, previous);\n    retained = true;\n  } catch (cause: unknown) {\n    if (!isEnoent(cause)) throw cause;\n  }\n  try {\n    await rename(staged, current);\n  } catch (cause: unknown) {\n    if (retained) await rename(previous, current);\n    throw cause;\n  }\n  if (retained) await rm(previous, { recursive: true, force: true });\n}\n","/**\n * Shared errno helpers for Node.js fs error narrowing.\n *\n * Avoids ad-hoc `(err as { code?: string }).code === \"ENOENT\"` repetition\n * across init / config / prototyping commands. Future errno codes\n * (`EACCES`, `EBUSY`, `EPERM`, ...) extend this module rather than\n * sprouting new inline checks.\n */\n\n/**\n * True iff `err` is a Node.js fs error whose `code` is `\"ENOENT\"`\n * (file or directory does not exist).\n */\nexport function isEnoent(err: unknown): boolean {\n  return hasErrnoCode(err) && err.code === \"ENOENT\";\n}\n\n/**\n * True iff `err` is a Node.js fs error whose `code` is `\"EPERM\"`.\n *\n * On Windows this is what `stat` raises for a **file** symlink whose target is\n * a directory: the link is intact and `readlink` returns the right target, but\n * the reparse tag is the wrong kind and the OS refuses to follow it. `git\n * worktree add` produces exactly that for `.claude/skills/*`, because at the\n * moment git writes the link its target does not yet exist in the new worktree\n * and it has no reftype hint. So a reader that treats EPERM as a filesystem\n * fault to propagate crashes on a condition that is structural damage to the\n * path it is inspecting.\n */\nexport function isEperm(err: unknown): boolean {\n  return hasErrnoCode(err) && err.code === \"EPERM\";\n}\n\n/**\n * True iff `err` is a Node.js error-shaped object carrying a string\n * `code` (e.g. `\"ENOENT\"`, `\"EACCES\"`, `\"ENOSPC\"`). Narrowing helper\n * shared across the codebase so individual call sites do not sprout\n * ad-hoc `(err as { code?: string }).code` casts (CLAUDE.md\n * \"avoid bare `as` type assertions; prefer type narrowing\").\n */\nexport function hasErrnoCode(err: unknown): err is { code: string } {\n  return (\n    err !== null &&\n    typeof err === \"object\" &&\n    \"code\" in err &&\n    typeof (err as { code?: unknown }).code === \"string\"\n  );\n}\n","import os from \"node:os\";\nimport path from \"node:path\";\n\nimport { randomUUID } from \"node:crypto\";\nimport {\n  cp,\n  lstat,\n  mkdir,\n  readFile,\n  readdir,\n  realpath,\n  rename,\n  rm,\n  writeFile,\n} from \"node:fs/promises\";\nimport { isEnoent } from \"../fs/errno.js\";\nimport {\n  GRAPH_VERSIONS,\n  graphAnalysisRoot,\n  graphRuntimePaths,\n  graphEnvironmentKey,\n} from \"./layout.js\";\nimport {\n  excludedGraphInput,\n  inspectCodeAnalysisAt,\n  nativeCodeAnalysisCurrent,\n} from \"./analysis.js\";\nimport {\n  assertGraphStoragePath,\n  assertIndependentAnalysis,\n  replaceGraphDirectory,\n} from \"./storage.js\";\nimport { codegraphEnvironment, type GraphProcess } from \"./process.js\";\nimport { getInitAssetsDir } from \"../../shared/assets.js\";\n\nfunction verifiedNativeRelease(output: string): boolean {\n  const release = /^v(\\d+\\.\\d+\\.\\d+)$/.exec(output.trim());\n  return release?.[1] === \"24.16.0\";\n}\n\nexport interface GraphReuseEnvironment {\n  platform: string;\n  architecture: string;\n  machine: string;\n}\n\nexport function graphReuseEnvironment(): GraphReuseEnvironment {\n  return { platform: process.platform, architecture: process.arch, machine: os.hostname() };\n}\n\nexport async function restoreCompletedCodeAnalysis(\n  root: string,\n  run: GraphProcess,\n  environment: GraphReuseEnvironment = graphReuseEnvironment(),\n): Promise<\"restored\" | \"cold\"> {\n  // Other native bundle combinations use generation until independent-copy proof exists.\n  if (environment.platform !== \"win32\" || environment.architecture !== \"x64\") return \"cold\";\n  const nativeRuntime = await run(graphRuntimePaths(root).codegraphNode, [\"--version\"], {\n    cwd: root,\n    env: codegraphEnvironment(root),\n  });\n  if (nativeRuntime.exitCode !== 0 || !verifiedNativeRelease(nativeRuntime.stdout)) return \"cold\";\n  const location = await completedAnalysisCache(root, \"codegraph\", run, environment);\n  if (!location) return \"cold\";\n  let candidates;\n  try {\n    candidates = await readdir(location.directory, { withFileTypes: true });\n  } catch (cause: unknown) {\n    if (isEnoent(cause)) return \"cold\";\n    throw cause;\n  }\n  for (const entry of candidates) {\n    if (!entry.isDirectory() || entry.isSymbolicLink() || entry.name.startsWith(\".\")) continue;\n    const candidate = path.join(location.directory, entry.name);\n    if (!(await cacheDirectorySafe(location.repository, candidate))) continue;\n    const metadata = await readSnapshotMetadata(candidate);\n    if (\n      !metadata ||\n      Object.keys(metadata).some(\n        (key) =>\n          ![\"layout\", \"corpusPolicy\", \"repository\", \"engineVersion\", \"environment\"].includes(key),\n      ) ||\n      metadata.layout !== 1 ||\n      metadata.corpusPolicy !== 1 ||\n      metadata.repository !== location.repository ||\n      metadata.engineVersion !== GRAPH_VERSIONS.codegraph ||\n      !sameEnvironment(metadata.environment, environment)\n    )\n      continue;\n    if (!(await safeCompletedCorpus(path.join(candidate, \"analysis\")))) continue;\n    if (!(await safeCodegraphInputs(root, path.join(candidate, \"analysis\"), run))) continue;\n    const current = graphAnalysisRoot(root, \"codegraph\");\n    const staged = path.join(path.dirname(current), `.restoring-codegraph-${randomUUID()}`);\n    await assertGraphStoragePath(root, staged);\n    try {\n      const cached = path.join(candidate, \"analysis\");\n      await assertIndependentAnalysis(cached);\n      await mkdir(path.dirname(staged), { recursive: true });\n      await cp(cached, staged, { recursive: true, dereference: false });\n      await assertIndependentAnalysis(staged);\n      if (!(await inspectCodeAnalysisAt(root, staged, run))) continue;\n      await replaceGraphDirectory(staged, current, root);\n      return \"restored\";\n    } finally {\n      await rm(staged, { recursive: true, force: true });\n    }\n  }\n  return \"cold\";\n}\n\nexport async function completedAnalysisCache(\n  root: string,\n  engine: \"codegraph\" | \"graphify\" | \"graphify-code\",\n  run: GraphProcess,\n  environment: GraphReuseEnvironment = graphReuseEnvironment(),\n): Promise<{ repository: string; directory: string } | undefined> {\n  const git = await run(\"git\", [\"rev-parse\", \"--path-format=absolute\", \"--git-common-dir\"], {\n    cwd: root,\n  });\n  if (git.exitCode !== 0 || !path.isAbsolute(git.stdout.trim())) return undefined;\n  const repository = await realpath(git.stdout.trim());\n  return {\n    repository,\n    directory: path.join(repository, \"qfai-graph-cache\", graphEnvironmentKey(environment), engine),\n  };\n}\n\nexport async function publishCompletedCodeAnalysis(\n  root: string,\n  run: GraphProcess,\n  environment: GraphReuseEnvironment = graphReuseEnvironment(),\n): Promise<\"published\" | \"unavailable\"> {\n  let staged: string | undefined;\n  try {\n    if (environment.platform !== \"win32\" || environment.architecture !== \"x64\")\n      return \"unavailable\";\n    const native = await run(graphRuntimePaths(root).codegraphNode, [\"--version\"], {\n      cwd: root,\n      env: codegraphEnvironment(root),\n    });\n    if (native.exitCode !== 0 || !verifiedNativeRelease(native.stdout)) return \"unavailable\";\n    const cache = await completedAnalysisCache(root, \"codegraph\", run, environment);\n    if (!cache) return \"unavailable\";\n    await ensureCacheDirectory(cache.repository, cache.directory);\n    const analysis = graphAnalysisRoot(root, \"codegraph\");\n    if (!(await safeCompletedCorpus(analysis)) || !(await safeCodegraphInputs(root, analysis, run)))\n      return \"unavailable\";\n    const identity = randomUUID();\n    staged = path.join(cache.directory, `.publishing-${identity}`);\n    await mkdir(staged);\n    await cp(analysis, path.join(staged, \"analysis\"), { recursive: true, dereference: false });\n    await assertIndependentAnalysis(path.join(staged, \"analysis\"));\n    if (\n      !(await safeCompletedCorpus(path.join(staged, \"analysis\"))) ||\n      !(await safeCodegraphInputs(root, path.join(staged, \"analysis\"), run))\n    )\n      return \"unavailable\";\n    if (!(await nativeCodeAnalysisCurrent(root, path.join(staged, \"analysis\"), run)))\n      return \"unavailable\";\n    await writeFile(\n      path.join(staged, \"completed.json\"),\n      JSON.stringify({\n        layout: 1,\n        corpusPolicy: 1,\n        repository: cache.repository,\n        engineVersion: GRAPH_VERSIONS.codegraph,\n        environment,\n      }) + \"\\n\",\n    );\n    await rename(staged, path.join(cache.directory, identity));\n    return \"published\";\n  } catch {\n    return \"unavailable\";\n  } finally {\n    if (staged) await rm(staged, { recursive: true, force: true });\n  }\n}\n\nexport async function ensureCacheDirectory(repository: string, directory: string): Promise<void> {\n  const relative = path.relative(repository, directory);\n  const parts = relative.split(path.sep);\n  if (path.isAbsolute(relative) || parts.includes(\"..\") || parts[0] !== \"qfai-graph-cache\")\n    throw new Error(\"Unsafe completed analysis path.\");\n  for (let depth = 1; depth <= parts.length; depth += 1) {\n    const component = path.join(repository, ...parts.slice(0, depth));\n    let stats;\n    try {\n      stats = await lstat(component);\n    } catch (cause: unknown) {\n      if (!isEnoent(cause)) throw cause;\n      await mkdir(component);\n      stats = await lstat(component);\n    }\n    if (stats.isSymbolicLink() || !stats.isDirectory())\n      throw new Error(\"Unsafe completed analysis path.\");\n  }\n}\n\nexport async function cacheDirectorySafe(repository: string, candidate: string): Promise<boolean> {\n  const relative = path.relative(repository, candidate);\n  const parts = relative.split(path.sep);\n  if (path.isAbsolute(relative) || parts.includes(\"..\") || parts[0] !== \"qfai-graph-cache\")\n    return false;\n  for (let depth = 1; depth <= parts.length; depth += 1) {\n    const stats = await lstat(path.join(repository, ...parts.slice(0, depth)));\n    if (stats.isSymbolicLink() || !stats.isDirectory()) return false;\n  }\n  return true;\n}\n\nexport async function readSnapshotMetadata(\n  candidate: string,\n): Promise<Record<string, unknown> | undefined> {\n  try {\n    const stats = await lstat(path.join(candidate, \"completed.json\"));\n    if (!stats.isFile() || stats.isSymbolicLink() || stats.nlink !== 1) return undefined;\n    const metadata: unknown = JSON.parse(\n      await readFile(path.join(candidate, \"completed.json\"), \"utf8\"),\n    );\n    return object(metadata) ? metadata : undefined;\n  } catch (cause: unknown) {\n    if (isEnoent(cause) || cause instanceof SyntaxError) return undefined;\n    throw cause;\n  }\n}\n\nexport function sameEnvironment(value: unknown, environment: GraphReuseEnvironment): boolean {\n  return (\n    object(value) &&\n    Object.keys(value).length === 3 &&\n    value.platform === environment.platform &&\n    value.architecture === environment.architecture &&\n    value.machine === environment.machine\n  );\n}\n\nexport async function safeCompletedCorpus(\n  directory: string,\n  relative = \"\",\n  engineDirectory = \".codegraph\",\n): Promise<boolean> {\n  try {\n    for (const entry of await readdir(path.join(directory, ...relative.split(\"/\")), {\n      withFileTypes: true,\n    })) {\n      const next = relative ? `${relative}/${entry.name}` : entry.name;\n      const input = next.startsWith(`${engineDirectory}/`)\n        ? next.slice(engineDirectory.length + 1)\n        : next;\n      if (\n        (next !== engineDirectory && excludedGraphInput(input)) ||\n        /\\.(?:pid|lock)$/i.test(entry.name)\n      )\n        return false;\n      const stats = await lstat(path.join(directory, ...next.split(\"/\")));\n      if (stats.isSymbolicLink() || (stats.isFile() && stats.nlink !== 1)) return false;\n      if (stats.isDirectory() && !(await safeCompletedCorpus(directory, next, engineDirectory)))\n        return false;\n      if (!stats.isDirectory() && !stats.isFile()) return false;\n    }\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nfunction object(value: unknown): value is Record<string, unknown> {\n  return typeof value === \"object\" && value !== null && !Array.isArray(value);\n}\n\nasync function safeCodegraphInputs(\n  root: string,\n  analysis: string,\n  run: GraphProcess,\n): Promise<boolean> {\n  const runtime = graphRuntimePaths(root);\n  const result = await run(\n    runtime.codegraphNode,\n    [\n      \"--liftoff-only\",\n      path.resolve(getInitAssetsDir(), \"..\", \"graph\", \"codegraph-native.mjs\"),\n      runtime.codegraphSdk,\n      analysis,\n      \"inventory\",\n    ],\n    { cwd: analysis, env: codegraphEnvironment(root) },\n  );\n  if (result.exitCode !== 0) return false;\n  try {\n    const inventory: unknown = JSON.parse(result.stdout);\n    if (!object(inventory) || !Array.isArray(inventory.files)) return false;\n    for (const file of inventory.files) {\n      if (\n        typeof file !== \"string\" ||\n        !file ||\n        path.posix.isAbsolute(file) ||\n        path.win32.isAbsolute(file)\n      )\n        return false;\n      const normalized = file.replaceAll(\"\\\\\", \"/\");\n      const parts = normalized.split(\"/\");\n      if (\n        parts.some((part) => !part || part === \".\" || part === \"..\") ||\n        excludedGraphInput(normalized)\n      )\n        return false;\n      const stats = await lstat(path.join(analysis, ...parts));\n      if (!stats.isFile() || stats.isSymbolicLink() || stats.nlink !== 1) return false;\n    }\n    return true;\n  } catch {\n    return false;\n  }\n}\n","import path from \"node:path\";\nimport { getInitAssetsDir } from \"../../shared/assets.js\";\nimport { copyFile, lstat, mkdir, readdir, rm } from \"node:fs/promises\";\nimport { isEnoent } from \"../fs/errno.js\";\nimport { GRAPH_VERSIONS, graphRuntimePaths, graphAnalysisRoot } from \"./layout.js\";\nimport type { GraphProcess } from \"./process.js\";\nimport { codegraphEnvironment } from \"./process.js\";\nimport { assertGraphStoragePath, assertIndependentAnalysis } from \"./storage.js\";\nexport { graphAnalysisRoot } from \"./layout.js\";\n\nexport interface CodeAnalysisCoverage {\n  complete: boolean;\n  unsupported: string[];\n  unreadable: string[];\n  unparsed: string[];\n}\n\nexport async function inspectCodeCoverage(\n  root: string,\n  run: GraphProcess,\n): Promise<CodeAnalysisCoverage> {\n  const unknown = { complete: false, unsupported: [], unreadable: [], unparsed: [] };\n  const runtime = graphRuntimePaths(root);\n  const analysis = graphAnalysisRoot(root, \"codegraph\");\n  const result = await run(\n    runtime.codegraphNode,\n    [\n      \"--liftoff-only\",\n      path.resolve(getInitAssetsDir(), \"..\", \"graph\", \"codegraph-native.mjs\"),\n      runtime.codegraphSdk,\n      analysis,\n      \"coverage\",\n    ],\n    { cwd: analysis, env: codegraphEnvironment(root) },\n  );\n  if (result.exitCode !== 0) return unknown;\n  let value: unknown;\n  try {\n    value = JSON.parse(result.stdout);\n  } catch {\n    return unknown;\n  }\n  if (\n    !object(value) ||\n    Object.keys(value).length !== 4 ||\n    typeof value.complete !== \"boolean\" ||\n    !stringArray(value.unsupported) ||\n    !stringArray(value.unreadable) ||\n    !stringArray(value.unparsed)\n  )\n    return unknown;\n  return {\n    complete:\n      value.complete &&\n      value.unsupported.length === 0 &&\n      value.unreadable.length === 0 &&\n      value.unparsed.length === 0,\n    unsupported: value.unsupported,\n    unreadable: value.unreadable,\n    unparsed: value.unparsed,\n  };\n}\n\nfunction stringArray(value: unknown): value is string[] {\n  return Array.isArray(value) && value.every((entry: unknown) => typeof entry === \"string\");\n}\n\nexport async function inspectCurrentCodeAnalysis(\n  root: string,\n  run: GraphProcess,\n): Promise<boolean> {\n  const analysis = graphAnalysisRoot(root, \"codegraph\");\n  return inspectCodeAnalysisAt(root, analysis, run);\n}\n\nexport async function inspectCodeAnalysisAt(\n  root: string,\n  analysis: string,\n  run: GraphProcess,\n): Promise<boolean> {\n  await assertGraphStoragePath(root, analysis);\n  try {\n    if (!(await lstat(path.join(analysis, \".codegraph\", \"codegraph.db\"))).isFile()) return false;\n  } catch (cause: unknown) {\n    if (isEnoent(cause)) return false;\n    throw cause;\n  }\n  await mirrorGraphCorpus(root, analysis);\n  return nativeCodeAnalysisCurrent(root, analysis, run);\n}\n\nexport async function nativeCodeAnalysisCurrent(\n  root: string,\n  analysis: string,\n  run: GraphProcess,\n): Promise<boolean> {\n  const result = await run(\n    process.execPath,\n    [graphRuntimePaths(root).codegraph, \"status\", analysis, \"--json\"],\n    { cwd: root, env: codegraphEnvironment(root) },\n  );\n  if (result.exitCode !== 0) return false;\n  let value: unknown;\n  try {\n    value = JSON.parse(result.stdout);\n  } catch (cause: unknown) {\n    if (!(cause instanceof SyntaxError)) throw cause;\n    return false;\n  }\n  if (!object(value) || !object(value.index) || !object(value.pendingChanges)) return false;\n  const changes = value.pendingChanges;\n  return (\n    value.initialized === true &&\n    value.version === GRAPH_VERSIONS.codegraph &&\n    value.projectPath === analysis &&\n    value.worktreeMismatch === null &&\n    value.index.state === \"complete\" &&\n    value.index.pendingRefs === 0 &&\n    value.index.reindexRecommended === false &&\n    value.index.builtWithVersion === GRAPH_VERSIONS.codegraph &&\n    value.index.builtWithExtractionVersion !== undefined &&\n    value.index.builtWithExtractionVersion === value.index.currentExtractionVersion &&\n    [\"added\", \"modified\", \"removed\"].every((key) => changes[key] === 0)\n  );\n}\n\nconst excludedDirectories = new Set([\n  \".git\",\n  \".codegraph\",\n  \".codegraph-wsl\",\n  \".graphify\",\n  \"graphify-out\",\n  \"node_modules\",\n  \"dist\",\n  \"tmp\",\n  \".claude\",\n  \".codex\",\n  \".vscode\",\n  \".ssh\",\n  \".aws\",\n  \".azure\",\n]);\n\nexport function excludedGraphInput(relative: string): boolean {\n  const parts = relative.split(\"/\");\n  const name = parts.at(-1) ?? \"\";\n  return (\n    parts.some((part) => excludedDirectories.has(part.toLowerCase())) ||\n    /^\\.qfai\\/(?:tools|report|evidence|review|discussion)(?:\\/|$)/i.test(relative) ||\n    relative.toLowerCase() === \".qfai/graph-processing.json\" ||\n    /^(?:\\.npmrc|\\.pypirc|\\.netrc|\\.git-credentials)$/i.test(name) ||\n    /^\\.env(?:\\.|$)/i.test(name) ||\n    /\\.(?:pem|key|p12|pfx|keystore)$/i.test(name) ||\n    /^(?:id_(?:rsa|dsa|ecdsa|ed25519)|credentials?(?:\\.|$)|secrets?(?:\\.|$)|\\.mcp\\.json$)/i.test(\n      name,\n    )\n  );\n}\n\nexport async function mirrorGraphCorpus(\n  root: string,\n  destination: string,\n  scope?: readonly string[],\n): Promise<void> {\n  await assertGraphStoragePath(root, destination);\n  await assertIndependentAnalysis(destination);\n  const files = new Set<string>();\n  await visit(\"\");\n  await removeAbsent(\"\");\n\n  async function visit(relative: string): Promise<void> {\n    for (const entry of await readdir(path.join(root, ...relative.split(\"/\")), {\n      withFileTypes: true,\n    })) {\n      const next = relative ? `${relative}/${entry.name}` : entry.name;\n      if (excludedGraphInput(next) || entry.isSymbolicLink()) continue;\n      if (\n        scope &&\n        !scope.some(\n          (item) => item === next || next.startsWith(`${item}/`) || item.startsWith(`${next}/`),\n        )\n      )\n        continue;\n      if (entry.isDirectory()) {\n        await visit(next);\n      } else if (entry.isFile()) {\n        const source = path.join(root, ...next.split(\"/\"));\n        const stats = await lstat(source);\n        if (!stats.isFile() || stats.nlink > 1) continue;\n        const target = path.join(destination, ...next.split(\"/\"));\n        await mkdir(path.dirname(target), { recursive: true });\n        await copyFile(source, target);\n        files.add(next);\n      }\n    }\n  }\n\n  async function removeAbsent(relative: string): Promise<void> {\n    for (const entry of await readdir(path.join(destination, ...relative.split(\"/\")), {\n      withFileTypes: true,\n    })) {\n      const next = relative ? `${relative}/${entry.name}` : entry.name;\n      if (entry.name === \".codegraph\" || entry.name === \".git\" || entry.name === \"graphify-out\")\n        continue;\n      const target = path.join(destination, ...next.split(\"/\"));\n      if (entry.isDirectory()) await removeAbsent(next);\n      else if (!files.has(next)) await rm(target);\n    }\n  }\n}\n\nfunction object(value: unknown): value is Record<string, unknown> {\n  return typeof value === \"object\" && value !== null && !Array.isArray(value);\n}\n","import { mkdir, readFile, rm, writeFile } from \"node:fs/promises\";\nimport { randomUUID } from \"node:crypto\";\nimport {\n  publishCompletedDocumentAnalysis,\n  restoreCompletedDocumentAnalysis,\n  safeDocumentCopy,\n} from \"./documentReuse.js\";\nimport type { GraphReuseEnvironment } from \"./reuse.js\";\nimport { withGraphLock } from \"./locks.js\";\nimport path from \"node:path\";\nimport { getInitAssetsDir } from \"../../shared/assets.js\";\nimport { isEnoent } from \"../fs/errno.js\";\nimport { mirrorGraphCorpus } from \"./analysis.js\";\nimport { graphAnalysisRoot, graphRuntimePaths, GRAPH_VERSIONS } from \"./layout.js\";\nimport {\n  GRAPH_PYTHON_FLAGS,\n  graphifyConfigurationSafe,\n  graphifyCorpusEnvironment,\n  runGraphProcess,\n  type GraphProcess,\n} from \"./process.js\";\nimport {\n  assertGraphStoragePath,\n  assertIndependentAnalysis,\n  replaceGraphDirectory,\n} from \"./storage.js\";\n\nexport interface DocumentPreparation {\n  status: \"prepared\" | \"not-ready\" | \"failed\";\n  source?: \"current\" | \"restored\" | \"generated\";\n  reuse?: \"published\" | \"unavailable\";\n  recovery?: string;\n}\n\nexport interface DocumentScopeStatus {\n  current: boolean;\n  unsupported: string[];\n  unreadable: string[];\n}\n\ninterface GraphProcessing {\n  readonly backend: \"ollama\" | \"openai\";\n  readonly model: string;\n  readonly endpoint?: string;\n  readonly scope?: string[];\n  readonly credentialEnv?: string;\n}\n\nfunction notCurrent(): DocumentScopeStatus {\n  return { current: false, unsupported: [], unreadable: [] };\n}\n\nexport interface ExternalProcessingRequest {\n  readonly destination: string;\n  readonly scope: readonly string[];\n  readonly backend: string;\n  readonly model: string;\n  readonly worktree: string;\n}\n\nexport type ApproveExternalProcessing = (request: ExternalProcessingRequest) => Promise<boolean>;\n\nexport const DOCUMENT_PROCESSING_SETUP =\n  'Configure a selected local backend and model in .qfai/graph-processing.json using .agents/rules/graph-exploration.md, then run node .qfai/tools/graph-cli.mjs documents \"<question>\".';\n\nexport async function prepareGraphifyCodeAnalysis(\n  root: string,\n  run: GraphProcess = runGraphProcess,\n): Promise<DocumentPreparation> {\n  if (!(await graphifyConfigurationSafe(root))) return providerConflict();\n  const current = graphAnalysisRoot(root, \"graphify-code\");\n  const staged = path.join(path.dirname(current), `.preparing-graphify-code-${randomUUID()}`);\n  await assertGraphStoragePath(root, staged);\n  await mkdir(staged, { recursive: true });\n  try {\n    await mirrorGraphCorpus(root, staged);\n    const result = await run(\n      graphRuntimePaths(root).python,\n      [\n        ...GRAPH_PYTHON_FLAGS,\n        \"-m\",\n        \"graphify\",\n        \"extract\",\n        path.toNamespacedPath(staged),\n        \"--code-only\",\n        \"--no-cluster\",\n        \"--no-dedup\",\n        \"--max-workers\",\n        \"1\",\n        \"--max-concurrency\",\n        \"1\",\n      ],\n      { cwd: staged, env: graphifyCorpusEnvironment(root, staged) },\n    );\n    if (\n      result.exitCode !== 0 ||\n      !(await currentGraphifyCorpus(root, staged, graphRuntimePaths(root).python, run, \"ast\"))\n    ) {\n      return { status: \"failed\", recovery: \"Repair local Graphify code analysis.\" };\n    }\n    await writeFile(\n      path.join(staged, \"graphify-out\", \"managed.json\"),\n      JSON.stringify({ engineVersion: GRAPH_VERSIONS.graphify, scope: \"code\" }),\n    );\n    await assertIndependentAnalysis(staged);\n    await replaceGraphDirectory(staged, current, root);\n    return { status: \"prepared\" };\n  } finally {\n    await rm(staged, { recursive: true, force: true });\n  }\n}\n\nexport async function prepareDocumentAnalysis(\n  root: string,\n  run: GraphProcess = runGraphProcess,\n  approveExternal: ApproveExternalProcessing = () => Promise.resolve(false),\n  environment?: GraphReuseEnvironment,\n): Promise<DocumentPreparation> {\n  return withGraphLock(root, \"analysis\", () =>\n    prepareDocumentAnalysisLocked(root, run, approveExternal, environment),\n  );\n}\n\nexport async function prepareDocumentAnalysisLocked(\n  root: string,\n  run: GraphProcess = runGraphProcess,\n  approveExternal: ApproveExternalProcessing = () => Promise.resolve(false),\n  environment?: GraphReuseEnvironment,\n): Promise<DocumentPreparation> {\n  if (!(await graphifyConfigurationSafe(root))) return providerConflict();\n  if (await inspectDocumentAnalysis(root, run)) return { status: \"prepared\", source: \"current\" };\n  const processing = await readGraphProcessing(root);\n  if (!processing) {\n    return {\n      status: \"not-ready\",\n      recovery: DOCUMENT_PROCESSING_SETUP,\n    };\n  }\n  const inspect = async (analysis: string, refresh: boolean) =>\n    (await inspectDocumentScopeAt(root, analysis, run, refresh)).current;\n  if ((await restoreCompletedDocumentAnalysis(root, run, inspect, environment)) === \"restored\")\n    return { status: \"prepared\", source: \"restored\" };\n  const endpoint = processing.endpoint ?? \"http://127.0.0.1:11434/v1\";\n  const selected = new URL(endpoint);\n  const backend = processing.backend;\n  const credential =\n    typeof processing.credentialEnv === \"string\"\n      ? process.env[processing.credentialEnv]\n      : undefined;\n  if (processing.credentialEnv !== undefined && !credential) {\n    return {\n      status: \"not-ready\",\n      recovery:\n        \"Set the explicitly selected credential environment variable before document processing.\",\n    };\n  }\n  const local = [\"127.0.0.1\", \"localhost\", \"[::1]\"].includes(selected.hostname);\n  let scope: readonly string[] | undefined;\n  if (processing.scope !== undefined) {\n    if (!validDocumentScope(processing.scope))\n      return { status: \"not-ready\", recovery: \"Select the exact document scope for processing.\" };\n    scope = Object.freeze(processing.scope.map((item) => item.replaceAll(\"\\\\\", \"/\")));\n  }\n  if (!local) {\n    if (!scope) {\n      return {\n        status: \"not-ready\",\n        recovery: \"Select the exact document scope for external processing.\",\n      };\n    }\n    const approval: unknown = await approveExternal(\n      Object.freeze({\n        destination: endpoint,\n        scope,\n        backend,\n        model: processing.model,\n        worktree: root,\n      }),\n    );\n    if (approval !== true) {\n      return {\n        status: \"not-ready\",\n        recovery:\n          \"External document processing requires explicit human authorization of its destination and scope.\",\n      };\n    }\n  }\n  const current = graphAnalysisRoot(root, \"graphify\");\n  const staged = path.join(path.dirname(current), `.preparing-graphify-${randomUUID()}`);\n  await assertGraphStoragePath(root, staged);\n  await mkdir(staged, { recursive: true });\n  try {\n    await mirrorGraphCorpus(root, staged, scope);\n    const result = await run(\n      graphRuntimePaths(root).python,\n      [\n        ...GRAPH_PYTHON_FLAGS,\n        \"-m\",\n        \"graphify\",\n        \"extract\",\n        path.toNamespacedPath(staged),\n        \"--backend\",\n        backend,\n        \"--model\",\n        processing.model,\n        \"--no-cluster\",\n        \"--no-dedup\",\n        \"--max-workers\",\n        \"1\",\n        \"--max-concurrency\",\n        \"1\",\n      ],\n      {\n        cwd: staged,\n        env: {\n          ...graphifyCorpusEnvironment(root, staged),\n          [backend === \"ollama\" ? \"OLLAMA_BASE_URL\" : \"OPENAI_BASE_URL\"]: endpoint,\n          ...(credential\n            ? { [backend === \"ollama\" ? \"OLLAMA_API_KEY\" : \"OPENAI_API_KEY\"]: credential }\n            : {}),\n        },\n      },\n    );\n    if (\n      result.exitCode !== 0 ||\n      !(await currentGraphifyCorpus(root, staged, graphRuntimePaths(root).python, run))\n    ) {\n      return {\n        status: \"failed\",\n        recovery: \"Check the selected local model and repair Graphify document analysis.\",\n      };\n    }\n    await writeFile(\n      path.join(staged, \"graphify-out\", \"managed.json\"),\n      JSON.stringify({ engineVersion: GRAPH_VERSIONS.graphify, scope: \"documents\", processing }),\n    );\n    await assertIndependentAnalysis(staged);\n    await replaceGraphDirectory(staged, current, root);\n    return {\n      status: \"prepared\",\n      source: \"generated\",\n      reuse: await publishCompletedDocumentAnalysis(root, run, inspect, environment),\n    };\n  } finally {\n    await rm(staged, { recursive: true, force: true });\n  }\n}\n\nexport async function readGraphProcessing(root: string): Promise<GraphProcessing | undefined> {\n  const processing = await readOptionalJson(path.join(root, \".qfai\", \"graph-processing.json\"));\n  return validGraphProcessing(processing) ? processing : undefined;\n}\n\nfunction validGraphProcessing(processing: unknown): processing is GraphProcessing {\n  const allowed = new Set([\"backend\", \"model\", \"endpoint\", \"scope\", \"credentialEnv\"]);\n  if (\n    !object(processing) ||\n    Object.keys(processing).some((key) => !allowed.has(key)) ||\n    (processing.backend !== \"ollama\" && processing.backend !== \"openai\") ||\n    typeof processing.model !== \"string\" ||\n    !processing.model.trim() ||\n    (processing.scope !== undefined && !validDocumentScope(processing.scope)) ||\n    (processing.credentialEnv !== undefined &&\n      (typeof processing.credentialEnv !== \"string\" ||\n        !/^[A-Z_][A-Z0-9_]*$/.test(processing.credentialEnv)))\n  )\n    return false;\n  if (processing.endpoint !== undefined) {\n    if (typeof processing.endpoint !== \"string\" || !processing.endpoint.trim()) return false;\n    try {\n      const endpoint = new URL(processing.endpoint);\n      if (\n        ![\"http:\", \"https:\"].includes(endpoint.protocol) ||\n        endpoint.username ||\n        endpoint.password ||\n        endpoint.search ||\n        endpoint.hash\n      )\n        return false;\n    } catch {\n      return false;\n    }\n  }\n  return true;\n}\n\nexport async function inspectDocumentAnalysis(root: string, run: GraphProcess): Promise<boolean> {\n  return (await inspectDocumentScope(root, run)).current;\n}\n\nexport async function inspectDocumentScope(\n  root: string,\n  run: GraphProcess,\n): Promise<DocumentScopeStatus> {\n  const analysis = graphAnalysisRoot(root, \"graphify\");\n  await assertGraphStoragePath(root, analysis);\n  return inspectDocumentScopeAt(root, analysis, run);\n}\n\nasync function inspectDocumentScopeAt(\n  root: string,\n  analysis: string,\n  run: GraphProcess,\n  refresh = true,\n): Promise<DocumentScopeStatus> {\n  const managed = await readOptionalJson(path.join(analysis, \"graphify-out\", \"managed.json\"));\n  const selected = await readGraphProcessing(root);\n  const processing = await processingForCompletedQuery(\n    root,\n    selected,\n    object(managed) ? managed.processing : undefined,\n  );\n  if (\n    !object(managed) ||\n    Object.keys(managed).length !== 3 ||\n    managed.engineVersion !== GRAPH_VERSIONS.graphify ||\n    managed.scope !== \"documents\" ||\n    !sameProcessing(managed.processing, processing)\n  )\n    return notCurrent();\n  if (!(await safeDocumentCopy(root, analysis, run))) return notCurrent();\n  const scope =\n    object(processing) && validDocumentScope(processing.scope) ? processing.scope : undefined;\n  if (refresh) await mirrorGraphCorpus(root, analysis, scope);\n  return nativeGraphifyScope(root, analysis, graphRuntimePaths(root).python, run);\n}\n\nasync function processingForCompletedQuery(\n  root: string,\n  selected: unknown,\n  recorded: unknown,\n): Promise<unknown> {\n  if (selected !== undefined) return selected;\n  try {\n    await readFile(path.join(root, \".qfai\", \"graph-processing.json\"));\n    return undefined;\n  } catch (cause: unknown) {\n    if (!isEnoent(cause)) throw cause;\n  }\n  if (!validGraphProcessing(recorded)) return undefined;\n  return recorded;\n}\n\nasync function currentGraphifyCorpus(\n  root: string,\n  analysis: string,\n  python: string,\n  run: GraphProcess,\n  kind: \"semantic\" | \"ast\" = \"semantic\",\n): Promise<boolean> {\n  return (await nativeGraphifyScope(root, analysis, python, run, kind)).current;\n}\n\nasync function nativeGraphifyScope(\n  root: string,\n  analysis: string,\n  python: string,\n  run: GraphProcess,\n  kind: \"semantic\" | \"ast\" = \"semantic\",\n): Promise<DocumentScopeStatus> {\n  if (!(await graphifyConfigurationSafe(root))) return notCurrent();\n  const result = await run(\n    python,\n    [\n      ...GRAPH_PYTHON_FLAGS,\n      path.resolve(getInitAssetsDir(), \"..\", \"graph\", \"graphify-native.py\"),\n      path.toNamespacedPath(analysis),\n      kind,\n    ],\n    {\n      cwd: analysis,\n      env: graphifyCorpusEnvironment(root, analysis),\n    },\n  );\n  if (result.exitCode !== 0) return notCurrent();\n  let state: unknown;\n  try {\n    state = JSON.parse(result.stdout);\n  } catch (cause: unknown) {\n    if (!(cause instanceof SyntaxError)) throw cause;\n    return notCurrent();\n  }\n  if (\n    !object(state) ||\n    typeof state.current !== \"boolean\" ||\n    !stringArray(state.unsupported) ||\n    !stringArray(state.unreadable)\n  )\n    return notCurrent();\n  const sourcePath = (file: string) =>\n    path.isAbsolute(file)\n      ? path\n          .relative(path.toNamespacedPath(analysis), path.toNamespacedPath(file))\n          .split(path.sep)\n          .join(\"/\")\n      : file;\n  return {\n    current: state.current,\n    unsupported: state.unsupported.map(sourcePath),\n    unreadable: state.unreadable.map(sourcePath),\n  };\n}\n\nasync function readOptionalJson(file: string): Promise<unknown> {\n  try {\n    return JSON.parse(await readFile(file, \"utf8\"));\n  } catch (cause: unknown) {\n    if (isEnoent(cause) || cause instanceof SyntaxError) return undefined;\n    throw cause;\n  }\n}\n\nfunction object(value: unknown): value is Record<string, unknown> {\n  return typeof value === \"object\" && value !== null && !Array.isArray(value);\n}\n\nfunction sameProcessing(left: unknown, right: unknown): boolean {\n  if (!object(left) || !object(right)) return false;\n  const fields = [\"backend\", \"model\", \"endpoint\", \"credentialEnv\", \"scope\"];\n  if (Object.keys(left).some((key) => !fields.includes(key))) return false;\n  return fields.every((key) => JSON.stringify(left[key]) === JSON.stringify(right[key]));\n}\n\nfunction stringArray(value: unknown): value is string[] {\n  return Array.isArray(value) && value.every((item: unknown) => typeof item === \"string\");\n}\n\nfunction validDocumentScope(value: unknown): value is string[] {\n  return (\n    Array.isArray(value) &&\n    value.length > 0 &&\n    value.every(\n      (item: unknown) =>\n        typeof item === \"string\" &&\n        item !== \"\" &&\n        !path.isAbsolute(item) &&\n        !item.split(/[\\\\/]/).some((part) => part === \"..\" || part === \".\" || part === \"\"),\n    )\n  );\n}\n\nfunction providerConflict(): DocumentPreparation {\n  return {\n    status: \"not-ready\",\n    recovery:\n      \"Review private Graphify provider settings and unsafe home paths before processing; existing settings were retained.\",\n  };\n}\n","import { randomUUID } from \"node:crypto\";\nimport { cp, lstat, mkdir, readdir, rename, rm, writeFile } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { getInitAssetsDir } from \"../../shared/assets.js\";\nimport { excludedGraphInput } from \"./analysis.js\";\nimport { GRAPH_VERSIONS, graphAnalysisRoot, graphRuntimePaths } from \"./layout.js\";\nimport {\n  GRAPH_PYTHON_FLAGS,\n  graphifyEnvironment,\n  graphifyCorpusEnvironment,\n  type GraphProcess,\n} from \"./process.js\";\nimport {\n  cacheDirectorySafe,\n  completedAnalysisCache,\n  ensureCacheDirectory,\n  graphReuseEnvironment,\n  readSnapshotMetadata,\n  safeCompletedCorpus,\n  sameEnvironment,\n  type GraphReuseEnvironment,\n} from \"./reuse.js\";\nimport {\n  assertGraphStoragePath,\n  assertIndependentAnalysis,\n  replaceGraphDirectory,\n} from \"./storage.js\";\n\ntype Inspect = (analysis: string, refresh: boolean) => Promise<boolean>;\n\nexport async function restoreCompletedDocumentAnalysis(\n  root: string,\n  run: GraphProcess,\n  inspect: Inspect,\n  environment: GraphReuseEnvironment = graphReuseEnvironment(),\n): Promise<\"restored\" | \"cold\"> {\n  let staged: string | undefined;\n  try {\n    if (!(await compatible(root, run, environment))) return \"cold\";\n    const cache = await completedAnalysisCache(root, \"graphify\", run, environment);\n    if (!cache) return \"cold\";\n    for (const entry of await readdir(cache.directory, { withFileTypes: true })) {\n      if (!entry.isDirectory() || entry.isSymbolicLink() || entry.name.startsWith(\".\")) continue;\n      const candidate = path.join(cache.directory, entry.name);\n      if (!(await cacheDirectorySafe(cache.repository, candidate))) continue;\n      const metadata = await readSnapshotMetadata(candidate);\n      if (\n        !metadata ||\n        Object.keys(metadata).length !== 5 ||\n        metadata.layout !== 1 ||\n        metadata.corpusPolicy !== 1 ||\n        metadata.repository !== cache.repository ||\n        metadata.engineVersion !== GRAPH_VERSIONS.graphify ||\n        !sameEnvironment(metadata.environment, environment)\n      )\n        continue;\n      const analysis = path.join(candidate, \"analysis\");\n      if (!(await safeDocumentCopy(root, analysis, run))) continue;\n      const current = graphAnalysisRoot(root, \"graphify\");\n      staged = path.join(path.dirname(current), `.restoring-graphify-${randomUUID()}`);\n      await assertGraphStoragePath(root, staged);\n      await mkdir(path.dirname(staged), { recursive: true });\n      await cp(analysis, staged, { recursive: true, dereference: false });\n      await assertIndependentAnalysis(staged);\n      if (await inspect(staged, true)) {\n        await replaceGraphDirectory(staged, current, root);\n        return \"restored\";\n      }\n      await rm(staged, { recursive: true, force: true });\n      staged = undefined;\n    }\n  } catch {\n    return \"cold\";\n  } finally {\n    if (staged) await discard(staged);\n  }\n  return \"cold\";\n}\n\nexport async function publishCompletedDocumentAnalysis(\n  root: string,\n  run: GraphProcess,\n  inspect: Inspect,\n  environment: GraphReuseEnvironment = graphReuseEnvironment(),\n): Promise<\"published\" | \"unavailable\"> {\n  let staged: string | undefined;\n  try {\n    if (!(await compatible(root, run, environment))) return \"unavailable\";\n    const cache = await completedAnalysisCache(root, \"graphify\", run, environment);\n    if (!cache) return \"unavailable\";\n    await ensureCacheDirectory(cache.repository, cache.directory);\n    const analysis = graphAnalysisRoot(root, \"graphify\");\n    if (!(await safeDocumentCopy(root, analysis, run))) return \"unavailable\";\n    const identity = randomUUID();\n    staged = path.join(cache.directory, `.publishing-${identity}`);\n    await mkdir(staged);\n    const copy = path.join(staged, \"analysis\");\n    await cp(analysis, copy, { recursive: true, dereference: false });\n    await assertIndependentAnalysis(copy);\n    if (!(await safeDocumentCopy(root, copy, run)) || !(await inspect(copy, false)))\n      return \"unavailable\";\n    await writeFile(\n      path.join(staged, \"completed.json\"),\n      JSON.stringify({\n        layout: 1,\n        corpusPolicy: 1,\n        repository: cache.repository,\n        engineVersion: GRAPH_VERSIONS.graphify,\n        environment,\n      }) + \"\\n\",\n    );\n    await rename(staged, path.join(cache.directory, identity));\n    return \"published\";\n  } catch {\n    return \"unavailable\";\n  } finally {\n    if (staged) await discard(staged);\n  }\n}\n\nasync function compatible(\n  root: string,\n  run: GraphProcess,\n  environment: GraphReuseEnvironment,\n): Promise<boolean> {\n  if (environment.platform !== \"win32\" || environment.architecture !== \"x64\") return false;\n  const result = await run(\n    graphRuntimePaths(root).python,\n    [...GRAPH_PYTHON_FLAGS, \"-c\", \"import sys; print(sys.version.split()[0])\"],\n    { cwd: root, env: graphifyEnvironment(root) },\n  );\n  return result.exitCode === 0 && result.stdout.trim() === \"3.12.13\";\n}\n\nexport async function safeDocumentCopy(\n  root: string,\n  analysis: string,\n  run: GraphProcess,\n): Promise<boolean> {\n  if (!(await safeCompletedCorpus(analysis, \"\", \"graphify-out\"))) return false;\n  const result = await run(\n    graphRuntimePaths(root).python,\n    [\n      ...GRAPH_PYTHON_FLAGS,\n      path.resolve(getInitAssetsDir(), \"..\", \"graph\", \"graphify-native.py\"),\n      path.toNamespacedPath(analysis),\n      \"inventory\",\n    ],\n    { cwd: analysis, env: graphifyCorpusEnvironment(root, analysis) },\n  );\n  if (result.exitCode !== 0) return false;\n  try {\n    const inventory: unknown = JSON.parse(result.stdout);\n    if (\n      typeof inventory !== \"object\" ||\n      inventory === null ||\n      Object.keys(inventory).length !== 1 ||\n      !(\"files\" in inventory) ||\n      !Array.isArray(inventory.files)\n    )\n      return false;\n    for (const file of inventory.files) {\n      if (typeof file !== \"string\" || path.posix.isAbsolute(file) || path.win32.isAbsolute(file))\n        return false;\n      const parts = file.replaceAll(\"\\\\\", \"/\").split(\"/\");\n      if (\n        parts.some((part) => !part || part === \".\" || part === \"..\") ||\n        excludedGraphInput(parts.join(\"/\"))\n      )\n        return false;\n      const stats = await lstat(path.join(analysis, ...parts));\n      if (!stats.isFile() || stats.isSymbolicLink() || stats.nlink !== 1) return false;\n    }\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nasync function discard(directory: string): Promise<void> {\n  try {\n    await rm(directory, { recursive: true, force: true });\n  } catch {\n    // An unfinished hidden candidate is never eligible for restoration.\n  }\n}\n","import { randomUUID } from \"node:crypto\";\nimport { unlink } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { hasErrnoCode } from \"../fs/errno.js\";\nimport { graphEnvironmentKey } from \"./layout.js\";\nimport {\n  graphStateDirectory,\n  GraphLocalStateError,\n  GRAPH_UUID,\n  readGraphLocalFile,\n  writeGraphLocalFile,\n} from \"./localFiles.js\";\n\nexport async function withGraphLock<T>(\n  root: string,\n  kind: \"analysis\" | \"state\",\n  action: () => Promise<T>,\n): Promise<T> {\n  const directory = await graphStateDirectory(root);\n  const file = path.join(directory, `${kind}.lock`);\n  const owner = {\n    kind: \"graph-lock\",\n    pid: process.pid,\n    createdAt: Date.now(),\n    token: randomUUID(),\n  };\n  try {\n    await writeGraphLocalFile(file, owner);\n  } catch (cause: unknown) {\n    if (!hasErrnoCode(cause) || cause.code !== \"EEXIST\") throw cause;\n    const text = await readGraphLocalFile(file);\n    let active = false;\n    try {\n      const existing: unknown = text === undefined ? undefined : JSON.parse(text);\n      if (typeof existing !== \"object\" || existing === null || Array.isArray(existing))\n        throw new Error(\"Invalid graph lock metadata.\", { cause });\n      const value = existing as Record<string, unknown>;\n      if (\n        Object.keys(value).length !== 4 ||\n        value.kind !== \"graph-lock\" ||\n        typeof value.pid !== \"number\" ||\n        !Number.isSafeInteger(value.pid) ||\n        value.pid <= 0 ||\n        typeof value.createdAt !== \"number\" ||\n        !Number.isSafeInteger(value.createdAt) ||\n        value.createdAt < 0 ||\n        typeof value.token !== \"string\" ||\n        !GRAPH_UUID.test(value.token)\n      )\n        throw new Error(\"Invalid graph lock metadata.\", { cause });\n      try {\n        process.kill(value.pid, 0);\n        active = true;\n      } catch (liveness: unknown) {\n        if (!hasErrnoCode(liveness) || liveness.code !== \"ESRCH\") active = true;\n      }\n    } catch {\n      // Invalid metadata is retained for manual recovery.\n    }\n    throw new GraphLocalStateError(\n      `Project graph ${kind} lock ${active ? \"is contended\" : \"requires manual recovery\"}.`,\n      active\n        ? `Retry after the active worktree ${kind} operation finishes; retain its lock.`\n        : `Retain and inspect .qfai/tools/state/${graphEnvironmentKey()}/${kind}.lock; remove only a confirmed abandoned worktree lock before retrying.`,\n      { cause },\n    );\n  }\n  try {\n    return await action();\n  } finally {\n    await releaseGraphLock(file, JSON.stringify(owner));\n  }\n}\n\nasync function releaseGraphLock(file: string, owner: string): Promise<void> {\n  const text = await readGraphLocalFile(file);\n  if (text !== owner)\n    throw new GraphLocalStateError(\n      \"Project graph lock ownership changed.\",\n      \"Retain the lock and repair the worktree graph state before retrying.\",\n    );\n  await unlink(file);\n}\n","import { lstat, mkdir, open } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { isEnoent } from \"../fs/errno.js\";\nimport { readPinnedRegularFileBytes } from \"../init/fsGuards.js\";\nimport { graphEnvironmentKey } from \"./layout.js\";\nimport { assertGraphStoragePath } from \"./storage.js\";\n\nexport const GRAPH_STATE_BYTES = 32768;\nexport const GRAPH_UUID = /^[0-9a-f]{8}-[0-9a-f]{4}-4[0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}$/;\n\nexport class GraphLocalStateError extends Error {\n  constructor(\n    message: string,\n    readonly recovery: string,\n    options?: ErrorOptions,\n  ) {\n    super(message, options);\n  }\n}\n\nexport async function graphStateDirectory(root: string): Promise<string> {\n  const directory = path.join(root, \".qfai\", \"tools\", \"state\", graphEnvironmentKey());\n  await assertGraphStoragePath(root, directory);\n  await mkdir(directory, { recursive: true });\n  await assertGraphStoragePath(root, directory);\n  return directory;\n}\n\nexport function invalidGraphState(): GraphLocalStateError {\n  return new GraphLocalStateError(\n    \"Project graph permission state is invalid.\",\n    \"Retain the local state and repair .qfai/tools/state before retrying the graph CLI or hook.\",\n  );\n}\n\nexport function graphStateText(value: unknown, maximum: number): value is string {\n  return (\n    typeof value === \"string\" &&\n    value.trim().length > 0 &&\n    value.length <= maximum &&\n    !value.includes(\"\\0\")\n  );\n}\n\nexport async function readGraphLocalFile(file: string): Promise<string | undefined> {\n  try {\n    const before = await lstat(file);\n    if (!before.isFile() || before.isSymbolicLink() || before.nlink !== 1)\n      throw invalidGraphState();\n    const pinned = await readPinnedRegularFileBytes(file, GRAPH_STATE_BYTES);\n    const after = await lstat(file);\n    if (\n      !pinned ||\n      before.dev !== pinned.dev ||\n      before.ino !== pinned.ino ||\n      after.dev !== pinned.dev ||\n      after.ino !== pinned.ino ||\n      !after.isFile() ||\n      after.isSymbolicLink() ||\n      after.nlink !== 1\n    )\n      throw invalidGraphState();\n    return pinned.content.toString(\"utf8\");\n  } catch (cause: unknown) {\n    if (isEnoent(cause)) return undefined;\n    throw cause;\n  }\n}\n\nexport async function writeGraphLocalFile(file: string, value: unknown): Promise<void> {\n  const text = JSON.stringify(value);\n  if (Buffer.byteLength(text) > GRAPH_STATE_BYTES) throw invalidGraphState();\n  const handle = await open(file, \"wx\", 0o600);\n  try {\n    await handle.writeFile(text, \"utf8\");\n  } finally {\n    await handle.close();\n  }\n}\n","import { constants } from \"node:fs\";\nimport type { Stats } from \"node:fs\";\nimport { access, lstat, open, readFile, stat } from \"node:fs/promises\";\nimport type { FileHandle } from \"node:fs/promises\";\nimport path from \"node:path\";\n\nimport { isEnoent } from \"../fs/errno.js\";\n\n/**\n * The first component of `target` at or below `destRoot` that is a symbolic\n * link, or `null` when every one of them is an ordinary directory or file.\n */\nexport async function firstLinkedComponent(\n  target: string,\n  destRoot: string,\n): Promise<string | null> {\n  const relative = path.relative(destRoot, target);\n  let walked = destRoot;\n  for (const segment of relative.split(path.sep)) {\n    walked = path.join(walked, segment);\n    const entry = await lstat(walked).catch(() => null);\n    if (entry?.isSymbolicLink() === true) return walked;\n  }\n  return null;\n}\n\n/** File contents, or `null` when nothing is there. Other read faults throw. */\nexport async function readTextFileIfPresent(target: string): Promise<string | null> {\n  try {\n    return await readFile(target, \"utf-8\");\n  } catch (err: unknown) {\n    if (isEnoent(err)) {\n      return null;\n    }\n    throw err;\n  }\n}\n\nexport async function exists(target: string): Promise<boolean> {\n  try {\n    await access(target);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * The bytes of a regular file no larger than `maxBytes`, read from the inode\n * the size was measured on, or `null` when the entry is not one.\n *\n * **The ceiling binds the entry that is read**, not the one a previous\n * `lstat` saw. Those are two pathname operations, and between them another\n * process can replace the path with a huge file or a FIFO — a bound checked on\n * the old inode does not bind the new one, and the read then exhausted memory\n * or never returned. One `open`, `fstat` on that handle, a bounded read from\n * it.\n *\n * A read fault is thrown rather than answered `null`: an ACL or a transient\n * `EIO` says the content could not be checked, and reporting that as \"not a\n * bounded regular file\" is a decision nobody made.\n */\nexport async function readPinnedRegularFile(\n  filePath: string,\n  maxBytes: number,\n): Promise<string | null> {\n  let handle: FileHandle | undefined;\n  try {\n    handle = await open(filePath, OPEN_READ_FLAGS);\n    const pinned = await handle.stat();\n    if (!pinned.isFile() || pinned.size > maxBytes) {\n      return null;\n    }\n    // Read to the end, not once: `read` may return fewer bytes than asked for,\n    // and the unfilled tail stayed NUL — a correct flattened wrapper then\n    // failed its own signature comparison and was left in place.\n    //\n    // And to `maxBytes + 1`, not to the size just measured. Another process\n    // holding this inode from before the rename can append after the `fstat`,\n    // and stopping at the old size read a **prefix** — which still matched the\n    // target, so the repair went ahead and the cleanup deleted the sidecar with\n    // the appended bytes in it. One byte past the ceiling is what distinguishes\n    // \"this is the whole file\" from \"this is as much as I asked for\".\n    const buffer = Buffer.alloc(maxBytes + 1);\n    let filled = 0;\n    while (filled < buffer.length) {\n      const { bytesRead } = await handle.read(buffer, filled, buffer.length - filled, filled);\n      if (bytesRead === 0) break;\n      filled += bytesRead;\n    }\n    if (filled > maxBytes) return null;\n    return buffer.subarray(0, filled).toString(\"utf-8\");\n  } catch (error: unknown) {\n    const code = (error as NodeJS.ErrnoException | null)?.code;\n    // `ENXIO` is what `O_NONBLOCK` returns for a FIFO with no writer, in place\n    // of blocking. Neither it nor a directory is a bounded regular file, and\n    // `open` is simply where that shows up instead of `fstat`.\n    if (code === \"ENXIO\" || code === \"EISDIR\") return null;\n    throw error;\n  } finally {\n    await handle?.close();\n  }\n}\n\n/**\n * One bounded read of a regular file: its bytes, and everything a replacement\n * has to put back.\n *\n * `mode`, `uid` and `gid` because an atomic replace writes a **new** inode;\n * `dev` and `ino` so the replacement can tell it is still about to replace the\n * file it read.\n */\nexport type PinnedFileRead = {\n  content: Buffer;\n  mode: number;\n  uid: number;\n  gid: number;\n  dev: number;\n  ino: number;\n};\n\n/**\n * The same read, returning the bytes.\n *\n * The restore copy writes back what it read, and decoding as UTF-8 first\n * replaces every invalid sequence with U+FFFD — irreversibly, since the sidecar\n * is removed straight after.\n *\n * `dev` / `ino` come off the same handle as the content, so a caller that\n * replaces the pathname afterwards can check that the entry it is about to\n * replace is still the inode it read.\n */\nexport async function readPinnedRegularFileBytes(\n  filePath: string,\n  maxBytes: number,\n): Promise<PinnedFileRead | null> {\n  let handle: FileHandle | undefined;\n  try {\n    handle = await open(filePath, OPEN_READ_FLAGS);\n    const pinned = await handle.stat();\n    if (!pinned.isFile() || pinned.size > maxBytes) return null;\n    const buffer = Buffer.alloc(maxBytes + 1);\n    let filled = 0;\n    while (filled < buffer.length) {\n      const { bytesRead } = await handle.read(buffer, filled, buffer.length - filled, filled);\n      if (bytesRead === 0) break;\n      filled += bytesRead;\n    }\n    if (filled > maxBytes) return null;\n    // The metadata comes from this `fstat`, not from a separate `stat` on the\n    // pathname. Two operations could land on two inodes: content read from a\n    // replacement that somebody made `0600` for a reason, restored under the\n    // `0644` the old entry carried, and readable by everyone.\n    return {\n      content: Buffer.from(buffer.subarray(0, filled)),\n      mode: pinned.mode & 0o7777,\n      uid: pinned.uid,\n      gid: pinned.gid,\n      dev: pinned.dev,\n      ino: pinned.ino,\n    };\n  } catch (error: unknown) {\n    const code = (error as NodeJS.ErrnoException | null)?.code;\n    if (code === \"ENXIO\" || code === \"EISDIR\") return null;\n    throw error;\n  } finally {\n    await handle?.close();\n  }\n}\n\n/**\n * Read-only, non-blocking where the platform defines it.\n *\n * Opening a FIFO for reading blocks until a writer appears, and the point of a\n * size check is not to be at the mercy of what is at the path. Windows has no\n * `O_NONBLOCK`, and no FIFOs in this sense either.\n */\nconst OPEN_READ_FLAGS =\n  typeof constants.O_NONBLOCK === \"number\"\n    ? constants.O_RDONLY | constants.O_NONBLOCK\n    : constants.O_RDONLY;\n\n/** Message text for an unknown thrown value, without `[object Object]`. */\nexport function describeError(err: unknown): string {\n  return err instanceof Error ? err.message : JSON.stringify(err);\n}\n\nexport function isEpermOnWindows(err: unknown, platform = process.platform): boolean {\n  return (\n    platform === \"win32\" &&\n    typeof err === \"object\" &&\n    err !== null &&\n    \"code\" in err &&\n    (err as { code: string }).code === \"EPERM\"\n  );\n}\n\nexport async function safeLstat(target: string): Promise<Stats | undefined> {\n  try {\n    return await lstat(target);\n  } catch {\n    return undefined;\n  }\n}\n\nasync function safeStat(target: string): Promise<Stats | undefined> {\n  try {\n    return await stat(target);\n  } catch {\n    return undefined;\n  }\n}\n\n/**\n * A path component init must not write through, relative to the project, and\n * whether it is a symlink (a junction included) or not a directory.\n */\nexport type UnsafeComponent = { readonly relativePath: string; readonly symlink: boolean };\n\n/**\n * The first component of `relativeDir` under `destRoot` that must not be\n * written through, or `undefined` when the whole chain is safe.\n *\n * `.codex/agents` is a path an untrusted repository controls, and a directory\n * component of it can be a symlink out of the tree — a checked-in\n * `.codex/agents -> /home/user/.config` is enough. `mkdir` follows it,\n * `writeFile` follows it, and `removeSymlinkAt` cannot see it: that guard\n * looks at the leaf `<name>.toml` only. A plain `qfai init` would then write\n * every profile into that external directory, and `--force` would let it\n * delete the orphan profiles there. So every component is `lstat`-ed before\n * anything is written or removed, and one link anywhere in the chain skips the\n * step whole rather than writing part of it somewhere unexpected.\n *\n * A component that does not exist yet ends the walk: `mkdir` creates real\n * directories, and nothing below an absent parent can exist either.\n *\n * The answer names the component by its path relative to `destRoot`. An\n * absolute path carries the destination directory's own name, which on an\n * untrusted repository can hold a newline or an ANSI escape.\n */\nexport async function findUnsafeWrapperComponent(\n  destRoot: string,\n  relativeDir: string,\n): Promise<UnsafeComponent | undefined> {\n  const segments = relativeDir.split(\"/\");\n  for (let depth = 1; depth <= segments.length; depth += 1) {\n    const relativePath = segments.slice(0, depth).join(\"/\");\n    const stats = await safeLstat(path.join(destRoot, ...segments.slice(0, depth)));\n    if (stats === undefined) {\n      return undefined;\n    }\n    if (stats.isSymbolicLink()) {\n      return { relativePath, symlink: true };\n    }\n    if (!stats.isDirectory()) {\n      return { relativePath, symlink: false };\n    }\n  }\n  return undefined;\n}\n\n/**\n * The first component of `relativeDir` under `destRoot` that `mkdir` cannot\n * pass: a symbolic link whose target is missing or is not a directory, or an\n * entry that is not a directory. A link to a directory that exists is passed,\n * because the instruction files are written through a shared directory on\n * purpose. `undefined` when the directory can be created or already exists.\n */\nexport async function findUnreachableHostDirComponent(\n  destRoot: string,\n  relativeDir: string,\n): Promise<UnsafeComponent | undefined> {\n  const segments = relativeDir.split(\"/\");\n  for (let depth = 1; depth <= segments.length; depth += 1) {\n    const relativePath = segments.slice(0, depth).join(\"/\");\n    const absolute = path.join(destRoot, ...segments.slice(0, depth));\n    const stats = await safeLstat(absolute);\n    if (stats === undefined) {\n      return undefined;\n    }\n    if (stats.isSymbolicLink()) {\n      if ((await safeStat(absolute))?.isDirectory() !== true) {\n        return { relativePath, symlink: true };\n      }\n    } else if (!stats.isDirectory()) {\n      return { relativePath, symlink: false };\n    }\n  }\n  return undefined;\n}\n\n/**\n * The component that keeps a file init writes into a host directory, such as\n * a hook file or `.github/copilot-instructions.md`, from being read or\n * written: a directory on its path that is a symbolic link or not a directory,\n * or the file itself when it is a symbolic link, whether its target exists or\n * not. `undefined` when the path is safe.\n */\nexport async function findUnsafeHostFileComponent(\n  destRoot: string,\n  segments: readonly string[],\n): Promise<UnsafeComponent | undefined> {\n  const parent = segments.slice(0, -1).join(\"/\");\n  const unsafeParent =\n    parent === \"\" ? undefined : await findUnsafeWrapperComponent(destRoot, parent);\n  if (unsafeParent !== undefined) {\n    return unsafeParent;\n  }\n  const leaf = await safeLstat(path.join(destRoot, ...segments));\n  return leaf?.isSymbolicLink() === true\n    ? { relativePath: segments.join(\"/\"), symlink: true }\n    : undefined;\n}\n","import {\n  GRAPH_PYTHON_FLAGS,\n  codegraphEnvironment,\n  graphifyCorpusEnvironment,\n  runGraphProcess,\n  type GraphProcess,\n} from \"./process.js\";\nimport { inspectCodeCoverage, inspectCurrentCodeAnalysis } from \"./analysis.js\";\nimport { graphAnalysisRoot, graphRuntimePaths } from \"./layout.js\";\nimport { readFile } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { findUnsafeHostFileComponent } from \"../init/fsGuards.js\";\nimport { inspectDocumentScope, readGraphProcessing } from \"./documents.js\";\n\nexport interface GraphQuestion {\n  domain: \"code\" | \"documents\";\n  question: string;\n}\n\nexport interface GraphAnswer {\n  requestedScope: Readonly<GraphQuestion>;\n  engine: \"codegraph\" | \"graphify\";\n  status: \"answered\" | \"not-ready\" | \"failed\" | \"no-match\" | \"incomplete\";\n  coverage?: {\n    unsupported: string[];\n    unreadable: string[];\n    unparsed?: string[];\n    complete?: boolean;\n  };\n  answer?: string;\n  failure?: string;\n  inferenceNotice?: string;\n  recovery?: string;\n}\n\nexport async function readKnownGraphFile(root: string, relative: string): Promise<string> {\n  const parts = relative.split(/[\\\\/]/);\n  if (\n    path.isAbsolute(relative) ||\n    parts.some((part) => part === \"..\" || part === \"\" || part === \".\") ||\n    (await findUnsafeHostFileComponent(root, parts))\n  ) {\n    throw new Error(\"Use an exact known source file inside the project.\");\n  }\n  return readFile(path.join(root, ...parts), \"utf8\");\n}\n\nexport async function continueGraphExploration(\n  root: string,\n  previous: GraphAnswer,\n  unresolved: GraphQuestion,\n  run: GraphProcess = runGraphProcess,\n): Promise<GraphAnswer> {\n  const nextEngine = unresolved.domain === \"code\" ? \"codegraph\" : \"graphify\";\n  if (\n    previous.status !== \"answered\" ||\n    previous.engine === nextEngine ||\n    unresolved.question.trim() === \"\"\n  ) {\n    throw new Error(\n      \"State the unresolved question in the other domain after an answered graph query.\",\n    );\n  }\n  return exploreGraph(root, unresolved, run);\n}\n\nexport async function exploreGraph(\n  root: string,\n  request: GraphQuestion,\n  run: GraphProcess = runGraphProcess,\n): Promise<GraphAnswer> {\n  const requestedScope = Object.freeze({ ...request });\n  try {\n    return { ...(await exploreGraphScope(root, request, run)), requestedScope };\n  } catch {\n    const engine = request.domain === \"code\" ? \"codegraph\" : \"graphify\";\n    return {\n      requestedScope,\n      engine,\n      status: \"failed\",\n      failure: `${engine === \"codegraph\" ? \"CodeGraph\" : \"Graphify\"} operation failed.`,\n      recovery: `Repair ${engine === \"codegraph\" ? \"CodeGraph\" : \"Graphify\"} analysis and retry the graph query.`,\n    };\n  }\n}\n\nasync function exploreGraphScope(\n  root: string,\n  request: GraphQuestion,\n  run: GraphProcess,\n): Promise<Omit<GraphAnswer, \"requestedScope\">> {\n  const documentScope =\n    request.domain === \"documents\" ? await inspectDocumentScope(root, run) : undefined;\n  if (documentScope?.current) {\n    const result = await run(\n      graphRuntimePaths(root).python,\n      [\n        ...GRAPH_PYTHON_FLAGS,\n        \"-m\",\n        \"graphify\",\n        \"query\",\n        request.question,\n        \"--graph\",\n        path.toNamespacedPath(\n          path.join(graphAnalysisRoot(root, \"graphify\"), \"graphify-out\", \"graph.json\"),\n        ),\n      ],\n      {\n        cwd: graphAnalysisRoot(root, \"graphify\"),\n        env: graphifyCorpusEnvironment(root, graphAnalysisRoot(root, \"graphify\")),\n      },\n    );\n    if (result.exitCode !== 0 && result.exitCode !== 4) {\n      return {\n        engine: \"graphify\",\n        status: \"failed\",\n        failure: \"Graphify query failed.\",\n        recovery: \"Repair Graphify analysis and retry the graph query.\",\n      };\n    }\n    const coverage = {\n      unsupported: documentScope.unsupported,\n      unreadable: documentScope.unreadable,\n    };\n    const inference = result.stdout.includes(\"[INFERRED]\")\n      ? {\n          inferenceNotice:\n            \"Inferred relationships need source confirmation; they do not establish semantic correctness or complete coverage.\",\n        }\n      : {};\n    if (coverage.unsupported.length > 0 || coverage.unreadable.length > 0) {\n      return {\n        engine: \"graphify\",\n        status: \"incomplete\",\n        answer: result.stdout,\n        coverage,\n        ...inference,\n        recovery:\n          \"Review unsupported and unreadable scope; this result does not establish absence.\",\n      };\n    }\n    return {\n      engine: \"graphify\",\n      status: result.exitCode === 4 ? \"no-match\" : \"answered\",\n      answer: result.stdout,\n      coverage,\n      ...inference,\n    };\n  }\n  if (request.domain === \"code\" && (await inspectCurrentCodeAnalysis(root, run))) {\n    const result = await run(\n      process.execPath,\n      [\n        graphRuntimePaths(root).codegraph,\n        \"context\",\n        request.question,\n        \"--path\",\n        graphAnalysisRoot(root, \"codegraph\"),\n        \"--format\",\n        \"json\",\n        \"--no-code\",\n      ],\n      {\n        cwd: root,\n        env: codegraphEnvironment(root),\n      },\n    );\n    const context = nativeCodeContext(result.stdout, request.question);\n    if (result.exitCode !== 0 || !context)\n      return {\n        engine: \"codegraph\",\n        status: \"failed\",\n        failure: \"CodeGraph query failed or returned unusable data.\",\n        recovery: \"Repair CodeGraph analysis and retry the graph query.\",\n      };\n    const coverage = await inspectCodeCoverage(root, run);\n    if (!coverage.complete)\n      return {\n        engine: \"codegraph\",\n        status: \"incomplete\",\n        answer: result.stdout,\n        coverage,\n        recovery:\n          \"Review unknown, unsupported, unreadable and unparsed code scope; this result does not establish absence.\",\n      };\n    return {\n      engine: \"codegraph\",\n      status: context.empty ? \"no-match\" : \"answered\",\n      answer: result.stdout,\n      coverage,\n      ...(context.empty\n        ? {\n            inferenceNotice:\n              \"No match in this context search over the confirmed native code scope; this does not establish global absence.\",\n          }\n        : {}),\n    };\n  }\n  return {\n    engine: request.domain === \"code\" ? \"codegraph\" : \"graphify\",\n    status: \"not-ready\",\n    recovery:\n      request.domain === \"documents\" && (await readGraphProcessing(root)) === undefined\n        ? \"Select document processing in .qfai/graph-processing.json before preparing document analysis.\"\n        : \"Prepare the requested graph analysis before querying it.\",\n  };\n}\n\nfunction nativeCodeContext(stdout: string, question: string): { empty: boolean } | undefined {\n  let value: unknown;\n  try {\n    value = JSON.parse(stdout);\n  } catch {\n    return undefined;\n  }\n  if (!object(value) || value.query !== question || typeof value.summary !== \"string\")\n    return undefined;\n  const arrays = [\"entryPoints\", \"nodes\", \"edges\", \"codeBlocks\", \"relatedFiles\"];\n  if (arrays.some((key) => !Array.isArray(value[key])) || !object(value.stats)) return undefined;\n  const stats = value.stats;\n  const counts = [\"nodeCount\", \"edgeCount\", \"fileCount\", \"codeBlockCount\", \"totalCodeSize\"];\n  if (counts.some((key) => !Number.isSafeInteger(stats[key]) || Number(stats[key]) < 0))\n    return undefined;\n  for (const [count, entries] of [\n    [\"nodeCount\", \"nodes\"],\n    [\"edgeCount\", \"edges\"],\n    [\"fileCount\", \"relatedFiles\"],\n    [\"codeBlockCount\", \"codeBlocks\"],\n  ] as const) {\n    const list = value[entries];\n    if (!Array.isArray(list) || stats[count] !== list.length) return undefined;\n  }\n  const empty = stats.nodeCount === 0;\n  if (\n    empty &&\n    (arrays.some((key) => Array.isArray(value[key]) && value[key].length !== 0) ||\n      counts.some((key) => stats[key] !== 0))\n  )\n    return undefined;\n  return { empty };\n}\n\nfunction object(value: unknown): value is Record<string, unknown> {\n  return typeof value === \"object\" && value !== null && !Array.isArray(value);\n}\n","import { prepareCodeAnalysis } from \"./codePreparation.js\";\nimport { prepareDocumentAnalysisLocked } from \"./documents.js\";\nimport { withGraphLock } from \"./locks.js\";\nimport { exploreGraph, type GraphAnswer, type GraphQuestion } from \"./query.js\";\nimport { runGraphProcess, type GraphProcess } from \"./process.js\";\n\nexport async function queryPreparedGraph(\n  root: string,\n  request: GraphQuestion,\n  run: GraphProcess = runGraphProcess,\n): Promise<GraphAnswer> {\n  return withGraphLock(root, \"analysis\", async () => {\n    const initial = await exploreGraph(root, request, run);\n    if (initial.status !== \"not-ready\") return initial;\n    const preparation =\n      request.domain === \"code\"\n        ? await prepareCodeAnalysis(root, run)\n        : await prepareDocumentAnalysisLocked(root, run);\n    if (preparation.status !== \"prepared\")\n      return {\n        ...initial,\n        status: preparation.status === \"failed\" ? \"failed\" : \"not-ready\",\n        ...(preparation.status === \"failed\"\n          ? {\n              failure: `${initial.engine === \"codegraph\" ? \"CodeGraph\" : \"Graphify\"} analysis preparation failed.`,\n            }\n          : {}),\n        ...(preparation.recovery ? { recovery: preparation.recovery } : {}),\n      };\n    return exploreGraph(root, request, run);\n  });\n}\n","import { randomUUID } from \"node:crypto\";\nimport { rename, unlink } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport {\n  classifyGraphExploration,\n  graphFallbackUnavailable,\n  type GraphHookDecision,\n  type GraphHookEvent,\n} from \"./hooks.js\";\nimport { withGraphLock } from \"./locks.js\";\nimport {\n  graphStateDirectory,\n  graphStateText,\n  invalidGraphState,\n  writeGraphLocalFile,\n} from \"./localFiles.js\";\nimport {\n  fullGraphState,\n  readGraphSearchRecords,\n  type PendingGraphSearch,\n  type GrantedGraphSearch,\n} from \"./permissionRecords.js\";\nimport { queryPreparedGraph } from \"./runner.js\";\nimport { runGraphProcess, type GraphProcess } from \"./process.js\";\nimport { assertGraphStoragePath } from \"./storage.js\";\n\nexport async function classifyStoredGraphExploration(\n  root: string,\n  event: GraphHookEvent,\n): Promise<GraphHookDecision> {\n  const decision = classifyGraphExploration(event);\n  if (decision.decision !== \"deny\" || decision.state !== \"configured\") return decision;\n  if (decision.exceptionEligible === false)\n    return decision.fallbackUnavailable\n      ? decision\n      : graphFallbackUnavailable(\n          decision,\n          \"The search target or operation cannot be scoped.\",\n          \"Run a single search with one explicit project-relative target, then retry the denied action.\",\n        );\n  if (!event.cwd || !graphStateText(event.session, 4096))\n    return graphFallbackUnavailable(\n      decision,\n      \"Observed session and worktree are required.\",\n      \"Enable session and cwd in the host event, run qfai init, then retry the denied action from this project worktree.\",\n    );\n  if (path.resolve(event.cwd) !== path.resolve(root))\n    return graphFallbackUnavailable(\n      decision,\n      \"The observed worktree differs from this project worktree.\",\n      \"Run the denied action from this project worktree, or run qfai init in the intended worktree before retrying.\",\n    );\n  if (event.workdir && path.resolve(event.cwd, event.workdir) !== path.resolve(root))\n    return graphFallbackUnavailable(\n      decision,\n      \"The requested workdir differs from this project worktree.\",\n      \"Set workdir to this project worktree and retry the denied action.\",\n    );\n  if (!decision.target || !decision.operation || !decision.domain) return decision;\n  const worktree = path.resolve(root);\n  const session = event.session;\n  return withGraphLock<GraphHookDecision>(root, \"state\", async () => {\n    const directory = await graphStateDirectory(root);\n    const records = await readGraphSearchRecords(root, directory);\n    const classified = classifyGraphExploration(event, (candidate) => {\n      if (candidate.decision !== \"deny\" || candidate.exceptionEligible === false) return candidate;\n      const grant = records.find(\n        (item) =>\n          !item.draft &&\n          item.record.kind === \"grant\" &&\n          item.record.target === candidate.target &&\n          item.record.operation === candidate.operation &&\n          item.record.domain === candidate.domain &&\n          item.record.worktree === worktree &&\n          item.record.session === session &&\n          Date.now() < item.record.expiresAt,\n      );\n      return grant?.record.kind === \"grant\"\n        ? {\n            ...candidate,\n            decision: \"allow\",\n            message: `AI-decided search fallback: ${grant.record.reason}`,\n          }\n        : candidate;\n    });\n    if (\n      classified.decision !== \"deny\" ||\n      classified.state !== \"configured\" ||\n      classified.exceptionEligible === false ||\n      !classified.target ||\n      !classified.operation ||\n      !classified.domain\n    )\n      return classified;\n    const observed = {\n      target: classified.target,\n      operation: classified.operation,\n      domain: classified.domain,\n      worktree,\n      session,\n    };\n    if (records.length >= 128) throw fullGraphState();\n    const createdAt = Date.now();\n    const pending: PendingGraphSearch = {\n      ...observed,\n      id: randomUUID(),\n      kind: \"pending\",\n      createdAt,\n      expiresAt: createdAt + 600000,\n    };\n    await writeGraphLocalFile(path.join(directory, `${pending.id}.pending.json`), pending);\n    return { ...classified, message: `${classified.message} Observed attempt: ${pending.id}.` };\n  });\n}\n\nexport async function requestStoredGraphFallback(\n  root: string,\n  attemptId: string,\n  question: string,\n  reason: string,\n  run: GraphProcess = runGraphProcess,\n) {\n  const observed = await withGraphLock(root, \"state\", async () => {\n    const directory = await graphStateDirectory(root);\n    const records = await readGraphSearchRecords(root, directory);\n    const pending = records.find(\n      (item) => item.record.kind === \"pending\" && item.record.id === attemptId,\n    );\n    if (!pending || pending.record.kind !== \"pending\") throw invalidGraphState();\n    return pending.record;\n  });\n  const graph = await queryPreparedGraph(root, { domain: observed.domain, question }, run);\n  const publication = await withGraphLock(root, \"state\", async () => {\n    const directory = await graphStateDirectory(root);\n    const records = await readGraphSearchRecords(root, directory);\n    const pending = records.find(\n      (item) => item.record.kind === \"pending\" && item.record.id === attemptId,\n    );\n    if (!pending || JSON.stringify(pending.record) !== JSON.stringify(observed))\n      throw invalidGraphState();\n    if (records.length >= 128) throw fullGraphState();\n    const createdAt = Date.now();\n    const grant: GrantedGraphSearch = {\n      ...observed,\n      kind: \"grant\",\n      reason,\n      createdAt,\n      expiresAt: createdAt + 60000,\n    };\n    const draft = path.join(directory, `${grant.id}.draft.json`);\n    await writeGraphLocalFile(draft, grant);\n    await unlink(pending.file);\n    return { directory, draft, grant };\n  });\n  await assertGraphStoragePath(root, publication.directory);\n  if (Date.now() >= publication.grant.expiresAt) throw invalidGraphState();\n  await rename(\n    publication.draft,\n    path.join(publication.directory, `${publication.grant.id}.grant.json`),\n  );\n  const { target, operation, worktree, session, expiresAt } = publication.grant;\n  return {\n    status: \"ready\",\n    permitted: true,\n    domain: observed.domain,\n    scope: { target, operation, worktree, session, reason, expiresAt },\n    graph,\n  };\n}\n","import { opendir, unlink } from \"node:fs/promises\";\nimport path from \"node:path\";\nimport {\n  GRAPH_UUID,\n  graphStateText,\n  invalidGraphState,\n  readGraphLocalFile,\n  GraphLocalStateError,\n} from \"./localFiles.js\";\n\ninterface ObservedScope {\n  id: string;\n  domain: \"code\" | \"documents\";\n  target: string;\n  operation: string;\n  worktree: string;\n  session: string;\n  createdAt: number;\n  expiresAt: number;\n}\n\nexport type PendingGraphSearch = ObservedScope & { kind: \"pending\" };\nexport type GrantedGraphSearch = ObservedScope & { kind: \"grant\"; reason: string };\nexport type GraphSearchRecord = PendingGraphSearch | GrantedGraphSearch;\nexport interface StoredGraphRecord {\n  file: string;\n  record: GraphSearchRecord;\n  draft: boolean;\n}\n\nexport async function readGraphSearchRecords(\n  root: string,\n  directory: string,\n): Promise<StoredGraphRecord[]> {\n  const records: StoredGraphRecord[] = [];\n  const entries = await opendir(directory);\n  for await (const entry of entries) {\n    if (entry.name === \"state.lock\" || entry.name === \"analysis.lock\") continue;\n    if (records.length >= 128) throw fullGraphState();\n    const match = /^(.+)\\.(pending|grant|draft)\\.json$/.exec(entry.name);\n    if (!match || !GRAPH_UUID.test(match[1] ?? \"\")) throw invalidGraphState();\n    const file = path.join(directory, entry.name);\n    const text = await readGraphLocalFile(file);\n    if (text === undefined) throw invalidGraphState();\n    let input: unknown;\n    try {\n      input = JSON.parse(text);\n    } catch {\n      throw invalidGraphState();\n    }\n    const record = parseGraphSearchRecord(input, root);\n    if (\n      !record ||\n      record.id !== match[1] ||\n      (match[2] === \"pending\" ? record.kind !== \"pending\" : record.kind !== \"grant\")\n    )\n      throw invalidGraphState();\n    records.push({ file, record, draft: match[2] === \"draft\" });\n  }\n  const current: StoredGraphRecord[] = [];\n  for (const item of records) {\n    if (Date.now() >= item.record.expiresAt) await unlink(item.file);\n    else current.push(item);\n  }\n  return current;\n}\n\nexport function fullGraphState(): GraphLocalStateError {\n  return new GraphLocalStateError(\n    \"Project graph permission state is full.\",\n    \"Retry after pending attempts or search grants expire; retain valid worktree state.\",\n  );\n}\n\nfunction parseGraphSearchRecord(input: unknown, root: string): GraphSearchRecord | undefined {\n  if (typeof input !== \"object\" || input === null || Array.isArray(input)) return undefined;\n  const value = input as Record<string, unknown>;\n  const fields = [\n    \"id\",\n    \"kind\",\n    \"domain\",\n    \"target\",\n    \"operation\",\n    \"worktree\",\n    \"session\",\n    \"createdAt\",\n    \"expiresAt\",\n  ];\n  if (value.kind === \"grant\") fields.push(\"reason\");\n  if (\n    Object.keys(value).length !== fields.length ||\n    fields.some((field) => !Object.hasOwn(value, field)) ||\n    typeof value.id !== \"string\" ||\n    !GRAPH_UUID.test(value.id) ||\n    (value.kind !== \"pending\" && value.kind !== \"grant\") ||\n    (value.domain !== \"code\" && value.domain !== \"documents\") ||\n    !graphStateText(value.target, 4096) ||\n    !graphStateText(value.operation, 128) ||\n    !graphStateText(value.worktree, 4096) ||\n    value.worktree !== path.resolve(root) ||\n    !graphStateText(value.session, 4096) ||\n    typeof value.createdAt !== \"number\" ||\n    typeof value.expiresAt !== \"number\" ||\n    !Number.isSafeInteger(value.createdAt) ||\n    value.createdAt < 0 ||\n    value.createdAt > 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package/dist/graph/cli.d.cts

@@ -0,0 +1,9 @@
+import { G as GraphProcess } from '../process-C21nTvkT.cjs';
+
+interface GraphCliIO {
+    output(text: string): void;
+    fail(): void;
+}
+declare function runInstalledGraphCli(root: string, args: string[], io?: GraphCliIO, run?: GraphProcess): Promise<void>;
+
+export { type GraphCliIO, runInstalledGraphCli };

package/dist/graph/cli.d.ts

@@ -0,0 +1,9 @@
+import { G as GraphProcess } from '../process-C21nTvkT.js';
+
+interface GraphCliIO {
+    output(text: string): void;
+    fail(): void;
+}
+declare function runInstalledGraphCli(root: string, args: string[], io?: GraphCliIO, run?: GraphProcess): Promise<void>;
+
+export { type GraphCliIO, runInstalledGraphCli };