purecontext-mcp 1.0.1

package/dist/core/index-manager.js

@@ -0,0 +1,461 @@
+import { readFileSync, unlinkSync, existsSync, rmSync } from 'fs';
+import { resolve } from 'path';
+import { cpus } from 'os';
+import { IndexError, WorkspaceLimitError } from './errors.js';
+import { logger } from './logger.js';
+import { computeRepoId, openDatabase, getIndexDir, upsertRepo, getRepo, SCHEMA_VERSION, } from './db/schema.js';
+import { insertSymbols, deleteByFile, getSymbolsByRepo, getSymbolsByFile, updateSymbolSummaries } from './db/symbol-store.js';
+import { upsertFile, deleteFile, getAllFileHashes } from './db/file-store.js';
+import { insertEdges, deleteEdgesByFile, } from './db/dep-store.js';
+import { discoverFiles, DEFAULT_FILE_LIMIT } from './file-discovery.js';
+import { createHashCache, computeHash } from './hash-cache.js';
+import { initParser, isInitialized } from './parse-dispatcher.js';
+import { getSupportedExtensions } from '../handlers/handler-registry.js';
+import { getAdapterExtensions, getRegisteredAdapters } from '../adapters/adapter-registry.js';
+import { processFile } from './file-processor.js';
+import { createWorkerPool } from './worker-pool.js';
+import { createResolver } from '../graph/path-resolver.js';
+import { buildGraph } from '../graph/graph-builder.js';
+import { join } from 'path';
+import { track } from './telemetry.js';
+// ─── Public API ───────────────────────────────────────────────────────────────
+/**
+ * Index a folder end-to-end:
+ * discover files → parse → extract symbols + imports → build dep graph → persist.
+ */
+export async function indexFolder(rootPath, options = {}) {
+    const absRoot = resolve(rootPath);
+    const repoId = computeRepoId(absRoot);
+    const start = Date.now();
+    // ── 0. Workspace plan limits ──────────────────────────────────────────────
+    const FREE_REPO_LIMIT = 999; // Temporarily unlimited — enforce when paid plans launch
+    const FREE_FILE_LIMIT = 10_000_000; // Temporarily unlimited — enforce when paid plans launch
+    if (options.workspacePlan === 'free') {
+        // Repo count limit
+        if (options.workspaceRepoCount !== undefined && options.workspaceRepoCount >= FREE_REPO_LIMIT) {
+            throw new WorkspaceLimitError('repos', FREE_REPO_LIMIT, options.workspaceRepoCount);
+        }
+    }
+    logger.info(`Indexing ${absRoot} (repo ${repoId})`);
+    // ── 1. Open database and ensure repo row exists ───────────────────────────
+    const db = openDatabase(repoId);
+    upsertRepo(db, {
+        id: repoId,
+        rootPath: absRoot,
+        symbolCount: 0,
+        fileCount: 0,
+        languages: ['typescript', 'javascript'],
+        indexedAt: Date.now(),
+        schemaVersion: SCHEMA_VERSION,
+        clonePath: options.clonePath ?? null,
+        tenantId: options.tenantId ?? 'local',
+    });
+    // ── 2. Ensure parser is ready ──────────────────────────────────────────────
+    if (!isInitialized()) {
+        await initParser();
+    }
+    // ── 3. Discover files ─────────────────────────────────────────────────────
+    const adapters = options.adapters ?? [];
+    const allExtensions = [...getSupportedExtensions(), ...getAdapterExtensions(adapters)];
+    const effectiveFileLimit = options.fileLimit ?? DEFAULT_FILE_LIMIT;
+    const { files: discovered, totalBeforeLimit } = discoverFiles(absRoot, {
+        extensions: allExtensions,
+        fileLimit: effectiveFileLimit,
+        extraExcludePatterns: options.excludePatterns,
+    });
+    // ── 3b. Filter to files with known language handlers OR active adapters ──
+    const supportedExts = new Set(getSupportedExtensions());
+    const adapterExts = new Set(getAdapterExtensions(adapters));
+    const supportedFiles = discovered.filter((df) => {
+        const dot = df.path.lastIndexOf('.');
+        const ext = dot >= 0 ? df.path.slice(dot) : '';
+        return supportedExts.has(ext) || adapterExts.has(ext);
+    });
+    // ── 3c-ws. Workspace file limit ───────────────────────────────────────────
+    if (options.workspacePlan === 'free' && totalBeforeLimit > FREE_FILE_LIMIT) {
+        db.close();
+        throw new WorkspaceLimitError('files', FREE_FILE_LIMIT, totalBeforeLimit);
+    }
+    // ── 3c. Check if fileLimit was hit ────────────────────────────────────────
+    const warnings = [];
+    const limitSkipped = effectiveFileLimit > 0 && totalBeforeLimit > effectiveFileLimit
+        ? totalBeforeLimit - effectiveFileLimit
+        : 0;
+    if (limitSkipped > 0) {
+        const msg = `fileLimit of ${effectiveFileLimit} reached — ${limitSkipped} file(s) were skipped. ` +
+            `Raise 'fileLimit' in ~/.purecontext/config.json to index the full project.`;
+        warnings.push(msg);
+        logger.warn(msg);
+    }
+    // ── 4. Load hash cache from DB ────────────────────────────────────────────
+    const cache = createHashCache();
+    const existingHashes = getAllFileHashes(db, repoId);
+    for (const [path, hash] of existingHashes) {
+        cache.set(path, hash);
+    }
+    const toProcess = [];
+    let filesSkipped = limitSkipped;
+    for (const df of supportedFiles) {
+        let content;
+        try {
+            content = readFileSync(join(absRoot, df.path));
+        }
+        catch {
+            filesSkipped++;
+            continue;
+        }
+        const hash = computeHash(content);
+        if (!cache.hasChanged(df.path, hash)) {
+            filesSkipped++;
+            continue;
+        }
+        toProcess.push({ relPath: df.path, content, hash });
+    }
+    logger.info(`${toProcess.length} files to process, ${filesSkipped} unchanged`);
+    // ── 6–9. Process each changed file ────────────────────────────────────────
+    const resolver = createResolver(absRoot);
+    const allImports = [];
+    const errors = [];
+    let symbolsFound = 0;
+    const concurrency = Math.min(options.concurrency ?? cpus().length, 8);
+    // Parallel path requires that every active adapter is a standard registered
+    // adapter (workers import all standard adapters). Custom/test adapters that
+    // aren't in the registry would be silently ignored by workers, causing
+    // missing symbols. Fall back to sequential for those cases.
+    const knownAdapterNames = new Set(getRegisteredAdapters().map((a) => a.name));
+    const canParallelize = adapters.every((a) => knownAdapterNames.has(a.name));
+    if (concurrency > 1 && toProcess.length > 1 && canParallelize) {
+        // ── Parallel path: dispatch to worker thread pool ──────────────────────
+        const pool = createWorkerPool(concurrency);
+        try {
+            const adapterNames = adapters.map((a) => a.name);
+            const jobs = toProcess.map(({ relPath, content }) => ({
+                relPath,
+                // Uint8Array view over the Buffer — structured clone copies just this slice.
+                content: new Uint8Array(content.buffer, content.byteOffset, content.byteLength),
+                adapterNames,
+            }));
+            const parseResults = await pool.run(jobs);
+            // Single outer transaction for all DB writes — major speedup on spinning disk.
+            db.transaction(() => {
+                for (let i = 0; i < parseResults.length; i++) {
+                    const pr = parseResults[i];
+                    const { relPath, content, hash } = toProcess[i];
+                    if (pr.error) {
+                        errors.push({ file: pr.relPath, message: pr.error });
+                        logger.warn(`Worker failed to process ${pr.relPath}: ${pr.error}`);
+                        continue;
+                    }
+                    if (pr.symbols.length === 0 && pr.imports.length === 0) {
+                        filesSkipped++;
+                        continue;
+                    }
+                    allImports.push(...pr.imports);
+                    deleteByFile(db, repoId, relPath);
+                    deleteEdgesByFile(db, repoId, relPath);
+                    if (pr.symbols.length > 0) {
+                        insertSymbols(db, repoId, pr.symbols);
+                    }
+                    symbolsFound += pr.symbols.length;
+                    upsertFile(db, repoId, relPath, hash, content);
+                    cache.set(relPath, hash);
+                    logger.debug(`Processed ${relPath}: ${pr.symbols.length} symbols, ${pr.imports.length} imports`);
+                }
+            })();
+        }
+        finally {
+            await pool.terminate();
+        }
+    }
+    else {
+        // ── Sequential path: concurrency=1 or single file ─────────────────────
+        for (const entry of toProcess) {
+            const { relPath, content, hash } = entry;
+            try {
+                const { symbols, imports } = await processFile(relPath, content, adapters);
+                if (symbols.length === 0 && imports.length === 0) {
+                    // No handler and no adapter matched — skip silently
+                    filesSkipped++;
+                    continue;
+                }
+                allImports.push(...imports);
+                // Persist: clear old data for this file, insert new
+                deleteByFile(db, repoId, relPath);
+                deleteEdgesByFile(db, repoId, relPath);
+                if (symbols.length > 0) {
+                    insertSymbols(db, repoId, symbols);
+                }
+                symbolsFound += symbols.length;
+                // Update file record (hash already computed in step 5)
+                upsertFile(db, repoId, relPath, hash, content);
+                cache.set(relPath, hash);
+                logger.debug(`Processed ${relPath}: ${symbols.length} symbols, ${imports.length} imports`);
+            }
+            catch (err) {
+                errors.push({
+                    file: relPath,
+                    message: err instanceof Error ? err.message : String(err),
+                });
+                logger.warn(`Failed to process ${relPath}: ${err}`);
+            }
+        }
+    }
+    // ── 10. Build and store dependency graph ─────────────────────────────────
+    const edges = buildGraph(allImports, resolver, repoId);
+    if (edges.length > 0) {
+        insertEdges(db, edges);
+    }
+    // ── 10b. Stage 3: AI summarization (optional) ────────────────────────────
+    // ── 10c. Semantic indexing (Phase 11, optional) ───────────────────────────
+    // Load all symbols once if either post-processor needs them — avoids up to
+    // three separate full-table scans for repos with many symbols.
+    const allRepoSymbols = options.semanticIndexer || options.aiSummarizer
+        ? getSymbolsByRepo(db, repoId)
+        : [];
+    if (options.semanticIndexer) {
+        if (options.semanticIndexer.shouldIndex(repoId, allRepoSymbols.length)) {
+            logger.info(`Semantic indexing: ${allRepoSymbols.length} symbols`);
+            try {
+                const semanticResult = await options.semanticIndexer.index(repoId, allRepoSymbols, db);
+                logger.info(`Semantic index built: ${semanticResult.symbolsIndexed} symbols in ` +
+                    `${semanticResult.embeddingTimeMs + semanticResult.indexBuildTimeMs}ms`);
+            }
+            catch (err) {
+                logger.warn(`Semantic indexing failed: ${err}`);
+            }
+        }
+        else {
+            logger.debug('Semantic indexing skipped (threshold not met or disabled)');
+        }
+    }
+    if (options.aiSummarizer) {
+        // Filter to symbols that still fall back to the signature (no docstring/framework summary).
+        const needsSummary = allRepoSymbols.filter((s) => !s.summary || s.summary === s.signature.slice(0, 100).trim());
+        if (needsSummary.length > 0) {
+            logger.info(`AI summarizing ${needsSummary.length} symbols`);
+            try {
+                const aiSummaries = await options.aiSummarizer.summarizeBatch(needsSummary);
+                if (aiSummaries.size > 0) {
+                    updateSymbolSummaries(db, repoId, aiSummaries);
+                    logger.info(`AI summaries applied to ${aiSummaries.size} symbols`);
+                }
+            }
+            catch (err) {
+                logger.warn(`AI summarization failed: ${err}`);
+            }
+        }
+    }
+    // ── 11. Update repo metadata ──────────────────────────────────────────────
+    const totalSymbols = db.prepare('SELECT COUNT(*) AS c FROM symbols WHERE repo_id = ?')
+        .get(repoId)?.c ?? 0;
+    const totalFiles = db.prepare('SELECT COUNT(*) AS c FROM files WHERE repo_id = ?')
+        .get(repoId)?.c ?? 0;
+    upsertRepo(db, {
+        id: repoId,
+        rootPath: absRoot,
+        symbolCount: totalSymbols,
+        fileCount: totalFiles,
+        languages: ['typescript', 'javascript'],
+        indexedAt: Date.now(),
+        schemaVersion: SCHEMA_VERSION,
+        clonePath: options.clonePath ?? null,
+        tenantId: options.tenantId ?? 'local',
+    });
+    db.close();
+    const result = {
+        repoId,
+        filesIndexed: toProcess.length,
+        filesSkipped,
+        symbolsFound,
+        totalSymbolsInDb: totalSymbols,
+        totalFilesInDb: totalFiles,
+        edgesFound: edges.length,
+        durationMs: Date.now() - start,
+        errors,
+        warnings,
+    };
+    logger.info(`Index complete: ${result.filesIndexed} files, ${result.symbolsFound} symbols, ` +
+        `${result.edgesFound} edges in ${result.durationMs}ms`);
+    // Fire-and-forget telemetry — never awaited, never affects the result
+    track({
+        event: 'index_complete',
+        languages: ['typescript', 'javascript'],
+        adapterNames: adapters.map((a) => a.name),
+        fileCount: result.filesIndexed,
+        symbolCount: result.symbolsFound,
+        durationMs: result.durationMs,
+        workerCount: concurrency,
+    }).catch(() => { });
+    return result;
+}
+/**
+ * Re-index a specific set of files (fast path for watcher events).
+ * Handles additions, modifications, and deletions.
+ */
+export async function reindexFiles(repoId, changedPaths, deletedPaths = [], options) {
+    const start = Date.now();
+    const db = openDatabase(repoId);
+    const repo = getRepo(db, repoId);
+    if (!repo) {
+        db.close();
+        throw new IndexError(`Repository ${repoId} not found — run indexFolder first`, 'reindexFiles');
+    }
+    const absRoot = repo.rootPath;
+    if (!isInitialized()) {
+        await initParser();
+    }
+    // ── Handle deletions ──────────────────────────────────────────────────────
+    for (const relPath of deletedPaths) {
+        deleteByFile(db, repoId, relPath);
+        deleteEdgesByFile(db, repoId, relPath);
+        deleteFile(db, repoId, relPath);
+        logger.debug(`Removed ${relPath} from index`);
+    }
+    // ── Re-process changed/added files ────────────────────────────────────────
+    const adapters = options?.adapters ?? [];
+    const resolver = createResolver(absRoot);
+    const allImports = [];
+    const errors = [];
+    let symbolsFound = 0;
+    let filesSkipped = 0;
+    for (const relPath of changedPaths) {
+        const absPath = join(absRoot, relPath);
+        let content;
+        try {
+            content = readFileSync(absPath);
+        }
+        catch (err) {
+            errors.push({ file: relPath, message: String(err) });
+            filesSkipped++;
+            continue;
+        }
+        try {
+            const { symbols, imports } = await processFile(relPath, content, adapters);
+            if (symbols.length === 0 && imports.length === 0) {
+                filesSkipped++;
+                continue;
+            }
+            allImports.push(...imports);
+            deleteByFile(db, repoId, relPath);
+            deleteEdgesByFile(db, repoId, relPath);
+            if (symbols.length > 0) {
+                insertSymbols(db, repoId, symbols);
+            }
+            symbolsFound += symbols.length;
+            const hash = computeHash(content);
+            upsertFile(db, repoId, relPath, hash, content);
+            logger.debug(`Re-indexed ${relPath}: ${symbols.length} symbols`);
+        }
+        catch (err) {
+            errors.push({
+                file: relPath,
+                message: err instanceof Error ? err.message : String(err),
+            });
+        }
+    }
+    // Build edges only for the re-processed files
+    const edges = buildGraph(allImports, resolver, repoId);
+    if (edges.length > 0) {
+        insertEdges(db, edges);
+    }
+    // ── Re-summarize changed symbols with AI (if available) ───────────────────
+    if (options?.aiSummarizer && changedPaths.length > 0) {
+        // Collect newly-indexed symbols that still fall back to the signature summary
+        // (those are candidates for AI summarization)
+        const changedSymbols = [];
+        for (const relPath of changedPaths) {
+            changedSymbols.push(...getSymbolsByFile(db, repoId, relPath));
+        }
+        const needsSummary = changedSymbols.filter((s) => !s.summary || s.summary === s.signature.slice(0, 100).trim());
+        if (needsSummary.length > 0) {
+            logger.info(`AI re-summarizing ${needsSummary.length} changed symbols`);
+            try {
+                const aiSummaries = await options.aiSummarizer.summarizeBatch(needsSummary);
+                if (aiSummaries.size > 0) {
+                    updateSymbolSummaries(db, repoId, aiSummaries);
+                    logger.info(`AI re-summaries applied to ${aiSummaries.size} symbols`);
+                }
+            }
+            catch (err) {
+                logger.warn(`AI re-summarization failed: ${err}`);
+            }
+        }
+    }
+    // ── Semantic incremental update (Phase 11, optional) ─────────────────────
+    if (options?.semanticIndexer) {
+        // Collect the symbols that were just indexed (added/modified)
+        const addedSymbols = [];
+        for (const relPath of changedPaths) {
+            addedSymbols.push(...getSymbolsByFile(db, repoId, relPath));
+        }
+        // Deleted symbols are identified by their file path — we removed them from
+        // the DB already, so we can't look them up. We pass empty string IDs here
+        // and rely on the HNSW remove being a no-op for unknown IDs.
+        // For a real implementation the watcher would track symbol IDs before deletion.
+        const removedIds = [];
+        if (addedSymbols.length > 0 || removedIds.length > 0) {
+            try {
+                await options.semanticIndexer.updateIncremental(repoId, addedSymbols, removedIds, db);
+            }
+            catch (err) {
+                logger.warn(`Semantic incremental update failed: ${err}`);
+            }
+        }
+    }
+    // Update repo metadata counts
+    const totalSymbols = db.prepare('SELECT COUNT(*) AS c FROM symbols WHERE repo_id = ?')
+        .get(repoId)?.c ?? 0;
+    const totalFiles = db.prepare('SELECT COUNT(*) AS c FROM files WHERE repo_id = ?')
+        .get(repoId)?.c ?? 0;
+    upsertRepo(db, {
+        ...repo,
+        symbolCount: totalSymbols,
+        fileCount: totalFiles,
+        indexedAt: Date.now(),
+    });
+    db.close();
+    return {
+        repoId,
+        filesIndexed: changedPaths.length - filesSkipped,
+        filesSkipped,
+        symbolsFound,
+        totalSymbolsInDb: totalSymbols,
+        totalFilesInDb: totalFiles,
+        edgesFound: edges.length,
+        durationMs: Date.now() - start,
+        errors,
+        warnings: [],
+    };
+}
+/**
+ * Remove the SQLite index file for a repo. No-op if it does not exist.
+ * If the repo was cloned (clonePath is set), also removes the clone directory.
+ */
+export function deleteIndex(repoId, indexDir) {
+    const dir = indexDir ?? getIndexDir();
+    const dbPath = join(dir, `${repoId}.db`);
+    // Read clone path BEFORE deleting the database
+    let clonePath = null;
+    if (existsSync(dbPath)) {
+        try {
+            const db = openDatabase(repoId, dir);
+            const meta = getRepo(db, repoId);
+            clonePath = meta?.clonePath ?? null;
+            db.close();
+        }
+        catch {
+            // If we can't read the DB, skip clone removal
+        }
+        unlinkSync(dbPath);
+        logger.info(`Deleted index for repo ${repoId}`);
+    }
+    // Remove clone directory if present
+    if (clonePath && existsSync(clonePath)) {
+        rmSync(clonePath, { recursive: true });
+        logger.info(`Deleted clone dir ${clonePath}`);
+    }
+}
+// ─── Helpers ─────────────────────────────────────────────────────────────────
+// Re-export for consumers that only need the ID computation
+export { computeRepoId } from './db/schema.js';
+//# sourceMappingURL=index-manager.js.map

package/dist/core/index-manager.js.map

@@ -0,0 +1 @@
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package/dist/core/indexing-worker.d.ts

@@ -0,0 +1,60 @@
+/**
+ * Worker thread entry point for parallel file parsing.
+ *
+ * Each worker maintains its own web-tree-sitter Parser instance — no shared
+ * state, no mutex needed. Adapters are imported here so they self-register into
+ * this worker's own adapter-registry instance.
+ *
+ * Protocol (main thread → worker):
+ *   ParseJob       — process one file, respond with ParseResult
+ *   ShutdownMsg    — graceful exit (worker calls process.exit)
+ */
+import type { SymbolRecord, ImportRecord } from './types.js';
+import '../adapters/vue.js';
+import '../adapters/nuxt.js';
+import '../adapters/react.js';
+import '../adapters/nextjs.js';
+import '../adapters/angular.js';
+import '../adapters/nestjs.js';
+import '../adapters/express.js';
+import '../adapters/fastify.js';
+import '../adapters/flask.js';
+import '../adapters/fastapi.js';
+import '../adapters/django.js';
+import '../adapters/django-orm.js';
+import '../adapters/gin.js';
+import '../adapters/echo.js';
+import '../adapters/fiber.js';
+import '../adapters/laravel.js';
+import '../adapters/symfony.js';
+import '../adapters/rails.js';
+import '../adapters/sinatra.js';
+import '../adapters/spring-boot.js';
+import '../adapters/spring-kotlin.js';
+import '../adapters/micronaut.js';
+import '../adapters/quarkus.js';
+import '../adapters/hibernate.js';
+import '../adapters/sqlalchemy.js';
+import '../adapters/axum.js';
+import '../adapters/actix-web.js';
+import '../adapters/rocket.js';
+import '../adapters/ktor.js';
+import '../adapters/flutter.js';
+import '../adapters/vapor.js';
+export interface ParseJob {
+    relPath: string;
+    /**
+     * File content as Uint8Array. Sent via structured clone (not transferred) so
+     * the main thread can still access the original Buffer for upsertFile.
+     */
+    content: Uint8Array;
+    adapterNames: string[];
+}
+export interface ParseResult {
+    relPath: string;
+    symbols: SymbolRecord[];
+    imports: ImportRecord[];
+    /** Set if an unrecoverable parse error occurred — worker stays alive. */
+    error?: string;
+}
+//# sourceMappingURL=indexing-worker.d.ts.map

package/dist/core/indexing-worker.d.ts.map

@@ -0,0 +1 @@
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