pulseed 0.5.4 → 0.6.0

package/dist/runtime/store/reproducibility-manifest.js

@@ -0,0 +1,392 @@
+import { createHash } from "node:crypto";
+import * as fsp from "node:fs/promises";
+import * as path from "node:path";
+import { z } from "zod";
+import { createRuntimeStorePaths, ensureRuntimeStorePaths, } from "./runtime-paths.js";
+import { RuntimeEvidenceLedger, } from "./evidence-ledger.js";
+export const RuntimeReproducibilityFileRefSchema = z.object({
+    label: z.string().min(1),
+    path: z.string().min(1).optional(),
+    state_relative_path: z.string().min(1).optional(),
+    kind: z.string().min(1).default("other"),
+    sha256: z.string().min(1).optional(),
+    size_bytes: z.number().int().nonnegative().optional(),
+    hash_status: z.enum(["hashed", "missing", "unreadable", "not_local"]).default("not_local"),
+    error: z.string().min(1).optional(),
+}).strict();
+export const RuntimeReproducibilityManifestSchema = z.object({
+    schema_version: z.literal("runtime-reproducibility-manifest-v1"),
+    manifest_id: z.string().min(1),
+    generated_at: z.string().datetime(),
+    updated_at: z.string().datetime(),
+    scope: z.object({
+        goal_id: z.string().min(1).optional(),
+        run_id: z.string().min(1).optional(),
+    }).strict(),
+    selected_candidate: z.object({
+        candidate_id: z.string().min(1),
+        label: z.string().min(1).optional(),
+        evidence_entry_id: z.string().min(1),
+        lineage: z.unknown(),
+        metrics: z.array(z.unknown()).default([]),
+        robustness: z.unknown().optional(),
+        disposition: z.string().min(1).optional(),
+        disposition_reason: z.string().min(1).optional(),
+    }).strict().optional(),
+    selected_deliverable: z.object({
+        label: z.string().min(1),
+        id: z.string().min(1).optional(),
+        kind: z.string().min(1).optional(),
+        summary: z.string().min(1).optional(),
+        path: z.string().min(1).optional(),
+        state_relative_path: z.string().min(1).optional(),
+        url: z.string().url().optional(),
+        occurred_at: z.string().datetime().optional(),
+        source: z.string().min(1),
+    }).strict().optional(),
+    finalization_preflight: z.object({
+        manifest_required_before_delivery: z.boolean().default(true),
+        approval_required_before_external_submission: z.boolean().default(true),
+        status: z.enum(["manifest_ready", "manifest_incomplete"]),
+        missing: z.array(z.string().min(1)).default([]),
+    }).strict(),
+    code_state: z.object({
+        commit: z.string().min(1).optional(),
+        dirty: z.boolean().optional(),
+        diff_sha256: z.string().min(1).optional(),
+        source: z.string().min(1).default("provided"),
+    }).strict(),
+    command: z.object({
+        command: z.string().min(1).optional(),
+        tool_name: z.string().min(1).optional(),
+        args: z.array(z.string()).default([]),
+        cwd: z.string().min(1).optional(),
+    }).strict().optional(),
+    runtime: z.record(z.string(), z.unknown()).default({}),
+    dependencies: z.record(z.string(), z.unknown()).default({}),
+    artifacts: z.array(RuntimeReproducibilityFileRefSchema).default([]),
+    configs: z.array(RuntimeReproducibilityFileRefSchema).default([]),
+    data_inputs: z.array(RuntimeReproducibilityFileRefSchema).default([]),
+    evaluator_records: z.array(z.object({
+        evaluator_id: z.string().min(1),
+        signal: z.enum(["local", "external"]),
+        source: z.string().min(1),
+        candidate_id: z.string().min(1),
+        status: z.string().min(1),
+        score: z.union([z.string(), z.number(), z.boolean(), z.null()]).optional(),
+        score_label: z.string().min(1).optional(),
+        direction: z.enum(["maximize", "minimize", "neutral"]).optional(),
+        observed_at: z.string().datetime().optional(),
+        evidence_entry_id: z.string().min(1),
+        provenance: z.unknown().optional(),
+        budget: z.unknown().optional(),
+        calibration: z.unknown().optional(),
+        linked_manifest_id: z.string().min(1),
+    }).strict()).default([]),
+    raw_evidence_refs: z.array(z.object({
+        entry_id: z.string().min(1),
+        kind: z.string().min(1),
+        occurred_at: z.string().datetime(),
+        summary: z.string().min(1).optional(),
+    }).strict()).default([]),
+}).strict();
+export class RuntimeReproducibilityManifestStore {
+    paths;
+    constructor(runtimeRootOrPaths) {
+        this.paths = typeof runtimeRootOrPaths === "string"
+            ? createRuntimeStorePaths(runtimeRootOrPaths)
+            : runtimeRootOrPaths ?? createRuntimeStorePaths();
+    }
+    async createOrUpdateForCandidate(input) {
+        await ensureRuntimeStorePaths(this.paths);
+        const entries = await this.readEntries(input);
+        const match = input.candidateId ? findCandidate(entries, input.candidateId) : null;
+        if (input.candidateId && !match && !input.deliverableArtifact) {
+            throw new Error(`Candidate evidence not found for reproducibility manifest: ${input.candidateId}`);
+        }
+        if (!match && !input.deliverableArtifact) {
+            throw new Error("Candidate or deliverable artifact is required for reproducibility manifest.");
+        }
+        const manifestId = manifestIdFor(input);
+        const existing = await this.load(manifestId);
+        const now = new Date().toISOString();
+        const sourceArtifacts = match?.candidate.artifacts
+            ?? (input.deliverableArtifact ? [toEvidenceArtifactRef(input.deliverableArtifact)] : []);
+        const artifactRefs = await Promise.all(sourceArtifacts.map((artifact) => hashArtifactRef(artifact, this.paths.rootDir, input.workspaceDir)));
+        const configRefs = await Promise.all((input.configPaths ?? []).map((filePath) => hashPathRef(filePath, "config", input.workspaceDir)));
+        const dataRefs = await Promise.all((input.dataPaths ?? []).map((filePath) => hashPathRef(filePath, "data", input.workspaceDir)));
+        const evaluatorRecords = input.candidateId ? collectEvaluatorRecords(entries, input.candidateId, manifestId) : [];
+        const missing = manifestMissingFields(artifactRefs, configRefs, dataRefs, input);
+        const manifest = RuntimeReproducibilityManifestSchema.parse({
+            schema_version: "runtime-reproducibility-manifest-v1",
+            manifest_id: manifestId,
+            generated_at: existing?.generated_at ?? now,
+            updated_at: now,
+            scope: {
+                ...(input.goalId ? { goal_id: input.goalId } : {}),
+                ...(input.runId ? { run_id: input.runId } : {}),
+            },
+            ...(match
+                ? {
+                    selected_candidate: {
+                        candidate_id: match.candidate.candidate_id,
+                        ...(match.candidate.label ? { label: match.candidate.label } : {}),
+                        evidence_entry_id: match.entry.id,
+                        lineage: match.candidate.lineage,
+                        metrics: match.candidate.metrics,
+                        ...(match.candidate.robustness ? { robustness: match.candidate.robustness } : {}),
+                        disposition: match.candidate.disposition,
+                        ...(match.candidate.disposition_reason ? { disposition_reason: match.candidate.disposition_reason } : {}),
+                    },
+                }
+                : {}),
+            ...(input.deliverableArtifact ? { selected_deliverable: input.deliverableArtifact } : {}),
+            finalization_preflight: {
+                manifest_required_before_delivery: input.requireBeforeDelivery ?? true,
+                approval_required_before_external_submission: true,
+                status: missing.length === 0 ? "manifest_ready" : "manifest_incomplete",
+                missing,
+            },
+            code_state: buildCodeState(input.codeState),
+            ...(input.command ? { command: { args: [], ...input.command } } : {}),
+            runtime: input.runtime ?? {},
+            dependencies: input.dependencies ?? {},
+            artifacts: artifactRefs,
+            configs: configRefs,
+            data_inputs: dataRefs,
+            evaluator_records: evaluatorRecords,
+            raw_evidence_refs: collectEvidenceRefs(entries, input.candidateId, input.deliverableArtifact),
+        });
+        await fsp.writeFile(this.pathFor(manifestId), `${JSON.stringify(manifest, null, 2)}\n`, "utf8");
+        return manifest;
+    }
+    async load(manifestId) {
+        try {
+            const raw = await fsp.readFile(this.pathFor(manifestId), "utf8");
+            return RuntimeReproducibilityManifestSchema.parse(JSON.parse(raw));
+        }
+        catch (err) {
+            if (err.code === "ENOENT")
+                return null;
+            throw err;
+        }
+    }
+    async findReadyForFinalization(input) {
+        await ensureRuntimeStorePaths(this.paths);
+        let fileNames;
+        try {
+            fileNames = await fsp.readdir(this.paths.reproducibilityManifestsDir);
+        }
+        catch (err) {
+            if (err.code === "ENOENT")
+                return null;
+            throw err;
+        }
+        const manifests = [];
+        for (const fileName of fileNames) {
+            if (!fileName.endsWith(".json"))
+                continue;
+            try {
+                const raw = await fsp.readFile(path.join(this.paths.reproducibilityManifestsDir, fileName), "utf8");
+                manifests.push(RuntimeReproducibilityManifestSchema.parse(JSON.parse(raw)));
+            }
+            catch {
+                continue;
+            }
+        }
+        return manifests
+            .filter((manifest) => manifest.finalization_preflight.status === "manifest_ready"
+            && manifestScopeMatches(manifest, input)
+            && manifestDeliverableMatches(manifest, input.deliverable ?? null))
+            .sort((a, b) => b.updated_at.localeCompare(a.updated_at))[0] ?? null;
+    }
+    pathFor(manifestId) {
+        return this.paths.reproducibilityManifestPath(manifestId);
+    }
+    async readEntries(input) {
+        const ledger = new RuntimeEvidenceLedger(this.paths);
+        const reads = await Promise.all([
+            input.goalId && ledger.readByGoal ? ledger.readByGoal(input.goalId) : Promise.resolve(null),
+            input.runId && ledger.readByRun ? ledger.readByRun(input.runId) : Promise.resolve(null),
+        ]);
+        const byId = new Map();
+        for (const read of reads) {
+            for (const entry of read?.entries ?? [])
+                byId.set(entry.id, entry);
+        }
+        return [...byId.values()].sort((a, b) => a.occurred_at.localeCompare(b.occurred_at));
+    }
+}
+function manifestIdFor(input) {
+    const scope = input.runId ? `run:${input.runId}` : `goal:${input.goalId ?? "unknown"}`;
+    const subject = input.candidateId
+        ? `candidate:${input.candidateId}`
+        : `deliverable:${input.deliverableArtifact?.id ?? input.deliverableArtifact?.label ?? "unknown"}`;
+    return `${safeManifestId(scope)}:${safeManifestId(subject)}`;
+}
+function safeManifestId(value) {
+    return value.normalize("NFKC").replace(/[^a-zA-Z0-9:._-]+/g, "_");
+}
+function toEvidenceArtifactRef(artifact) {
+    return {
+        label: artifact.label,
+        ...(artifact.path ? { path: artifact.path } : {}),
+        ...(artifact.state_relative_path ? { state_relative_path: artifact.state_relative_path } : {}),
+        ...(artifact.url ? { url: artifact.url } : {}),
+        kind: artifact.kind === "log" || artifact.kind === "metrics" || artifact.kind === "report" || artifact.kind === "diff" || artifact.kind === "url"
+            ? artifact.kind
+            : "other",
+    };
+}
+function findCandidate(entries, candidateId) {
+    for (const entry of [...entries].reverse()) {
+        const candidate = entry.candidates?.find((item) => item.candidate_id === candidateId);
+        if (candidate)
+            return { entry, candidate };
+    }
+    return null;
+}
+async function hashArtifactRef(artifact, runtimeRoot, workspaceDir) {
+    const filePath = artifact.path
+        ?? (artifact.state_relative_path ? path.join(runtimeRoot, artifact.state_relative_path) : undefined);
+    return {
+        ...(await hashPath(filePath, workspaceDir)),
+        label: artifact.label,
+        ...(artifact.path ? { path: artifact.path } : {}),
+        ...(artifact.state_relative_path ? { state_relative_path: artifact.state_relative_path } : {}),
+        kind: artifact.kind,
+    };
+}
+async function hashPathRef(filePath, kind, workspaceDir) {
+    return {
+        ...(await hashPath(filePath, workspaceDir)),
+        label: path.basename(filePath),
+        path: filePath,
+        kind,
+    };
+}
+async function hashPath(filePath, workspaceDir) {
+    if (!filePath)
+        return { hash_status: "not_local" };
+    const resolved = path.isAbsolute(filePath)
+        ? filePath
+        : path.resolve(workspaceDir ?? process.cwd(), filePath);
+    try {
+        const stat = await fsp.stat(resolved);
+        if (!stat.isFile())
+            return { hash_status: "unreadable", error: "path is not a file" };
+        const bytes = await fsp.readFile(resolved);
+        return {
+            sha256: createHash("sha256").update(bytes).digest("hex"),
+            size_bytes: stat.size,
+            hash_status: "hashed",
+        };
+    }
+    catch (err) {
+        if (err.code === "ENOENT")
+            return { hash_status: "missing" };
+        return {
+            hash_status: "unreadable",
+            error: err instanceof Error ? err.message : String(err),
+        };
+    }
+}
+function collectEvaluatorRecords(entries, candidateId, manifestId) {
+    const records = [];
+    for (const entry of entries) {
+        for (const evaluator of entry.evaluators ?? []) {
+            if (evaluator.candidate_id !== candidateId)
+                continue;
+            records.push(toManifestEvaluatorRecord(evaluator, entry.id, manifestId));
+        }
+    }
+    return records;
+}
+function toManifestEvaluatorRecord(evaluator, entryId, manifestId) {
+    return {
+        evaluator_id: evaluator.evaluator_id,
+        signal: evaluator.signal,
+        source: evaluator.source,
+        candidate_id: evaluator.candidate_id,
+        status: evaluator.status,
+        ...(evaluator.score !== undefined ? { score: evaluator.score } : {}),
+        ...(evaluator.score_label ? { score_label: evaluator.score_label } : {}),
+        ...(evaluator.direction ? { direction: evaluator.direction } : {}),
+        ...(evaluator.observed_at ? { observed_at: evaluator.observed_at } : {}),
+        evidence_entry_id: entryId,
+        ...(evaluator.provenance ? { provenance: evaluator.provenance } : {}),
+        ...(evaluator.budget ? { budget: evaluator.budget } : {}),
+        ...(evaluator.calibration ? { calibration: evaluator.calibration } : {}),
+        linked_manifest_id: manifestId,
+    };
+}
+function collectEvidenceRefs(entries, candidateId, deliverable) {
+    return entries
+        .filter((entry) => evidenceMatchesManifestSubject(entry, candidateId, deliverable))
+        .map((entry) => ({
+        entry_id: entry.id,
+        kind: entry.kind,
+        occurred_at: entry.occurred_at,
+        ...(entry.summary ? { summary: entry.summary } : {}),
+    }));
+}
+function evidenceMatchesManifestSubject(entry, candidateId, deliverable) {
+    if (candidateId && (entry.candidates?.some((candidate) => candidate.candidate_id === candidateId)
+        || entry.evaluators?.some((evaluator) => evaluator.candidate_id === candidateId))) {
+        return true;
+    }
+    if (!deliverable)
+        return false;
+    return entry.artifacts.some((artifact) => (deliverable.path && artifact.path === deliverable.path)
+        || (deliverable.state_relative_path && artifact.state_relative_path === deliverable.state_relative_path)
+        || artifact.label === deliverable.label);
+}
+function manifestScopeMatches(manifest, input) {
+    if (input.goalId && manifest.scope.goal_id && manifest.scope.goal_id !== input.goalId)
+        return false;
+    if (input.runId && manifest.scope.run_id && manifest.scope.run_id !== input.runId)
+        return false;
+    if (input.goalId && !input.runId)
+        return manifest.scope.goal_id === input.goalId;
+    if (input.runId) {
+        return manifest.scope.run_id === input.runId || manifest.scope.goal_id === input.goalId;
+    }
+    return true;
+}
+function manifestDeliverableMatches(manifest, deliverable) {
+    if (!deliverable)
+        return true;
+    if (manifest.selected_deliverable && deliverableRefMatches(manifest.selected_deliverable, deliverable))
+        return true;
+    return manifest.artifacts.some((artifact) => deliverableRefMatches(artifact, deliverable));
+}
+function deliverableRefMatches(ref, deliverable) {
+    return (Boolean(deliverable.id) && ref.id === deliverable.id)
+        || (Boolean(deliverable.path) && ref.path === deliverable.path)
+        || (Boolean(deliverable.state_relative_path) && ref.state_relative_path === deliverable.state_relative_path)
+        || (Boolean(deliverable.url) && ref.url === deliverable.url)
+        || (Boolean(deliverable.label) && ref.label === deliverable.label);
+}
+function buildCodeState(input) {
+    return {
+        ...(input?.commit ? { commit: input.commit } : {}),
+        ...(input?.dirty !== undefined ? { dirty: input.dirty } : {}),
+        ...(input?.diff_sha256 ? { diff_sha256: input.diff_sha256 } : input?.diff ? { diff_sha256: createHash("sha256").update(input.diff).digest("hex") } : {}),
+        source: input?.source ?? "provided",
+    };
+}
+function manifestMissingFields(artifacts, configs, dataInputs, input) {
+    const missing = [];
+    if (artifacts.length === 0)
+        missing.push("artifact_hashes");
+    if (artifacts.some((artifact) => artifact.hash_status !== "hashed"))
+        missing.push("some_artifacts_unhashed");
+    if ((input.configPaths?.length ?? 0) > 0 && configs.some((config) => config.hash_status !== "hashed"))
+        missing.push("some_configs_unhashed");
+    if ((input.dataPaths?.length ?? 0) > 0 && dataInputs.some((data) => data.hash_status !== "hashed"))
+        missing.push("some_data_inputs_unhashed");
+    if (!input.codeState?.commit && !input.codeState?.diff_sha256 && !input.codeState?.diff)
+        missing.push("code_state");
+    return missing;
+}
+//# sourceMappingURL=reproducibility-manifest.js.map

package/dist/runtime/store/reproducibility-manifest.js.map

@@ -0,0 +1 @@
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package/dist/runtime/store/research-evidence.d.ts

@@ -0,0 +1,8 @@
+import type { RuntimeEvidenceEntry, RuntimeEvidenceResearchMemo } from "./evidence-ledger.js";
+export interface RuntimeResearchMemoContext extends RuntimeEvidenceResearchMemo {
+    entry_id: string;
+    occurred_at: string;
+    phase?: string;
+}
+export declare function summarizeEvidenceResearchMemos(entries: RuntimeEvidenceEntry[]): RuntimeResearchMemoContext[];
+//# sourceMappingURL=research-evidence.d.ts.map

package/dist/runtime/store/research-evidence.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"research-evidence.d.ts","sourceRoot":"","sources":["../../../src/runtime/store/research-evidence.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EACV,oBAAoB,EACpB,2BAA2B,EAC5B,MAAM,sBAAsB,CAAC;AAE9B,MAAM,WAAW,0BAA2B,SAAQ,2BAA2B;IAC7E,QAAQ,EAAE,MAAM,CAAC;IACjB,WAAW,EAAE,MAAM,CAAC;IACpB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,wBAAgB,8BAA8B,CAC5C,OAAO,EAAE,oBAAoB,EAAE,GAC9B,0BAA0B,EAAE,CAa9B"}

package/dist/runtime/store/research-evidence.js

@@ -0,0 +1,15 @@
+export function summarizeEvidenceResearchMemos(entries) {
+    const memos = [];
+    for (const entry of entries) {
+        for (const memo of entry.research ?? []) {
+            memos.push({
+                ...memo,
+                entry_id: entry.id,
+                occurred_at: entry.occurred_at,
+                ...(entry.scope.phase ? { phase: entry.scope.phase } : {}),
+            });
+        }
+    }
+    return memos.sort((a, b) => b.occurred_at.localeCompare(a.occurred_at));
+}
+//# sourceMappingURL=research-evidence.js.map

package/dist/runtime/store/research-evidence.js.map

@@ -0,0 +1 @@
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