protvista-uniprot 4.4.5 → 4.4.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/protvista-uniprot.mjs +1842 -1831
- package/dist/protvista-uniprot.mjs.map +1 -1
- package/package.json +1 -1
- package/src/protvista-uniprot-structure.ts +16 -1
package/package.json
CHANGED
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@@ -32,6 +32,17 @@ const providersFrom3DBeacons = [
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'levylab',
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];
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35
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+
const sourceMethods = new Map([
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36
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['SWISS-MODEL', 'Modeling'],
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['ModelArchive', 'Modeling'],
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['PED', 'Modeling'],
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['SASBDB', 'SAS'],
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['isoform.io', 'Predicted'],
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['AlphaFill', 'Predicted'],
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['HEGELAB', 'Modeling'],
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['levylab', 'Modeling'],
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]);
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+
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type UniProtKBData = {
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uniProtKBCrossReferences: UniProtKBCrossReference[];
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sequence: Sequence;
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@@ -170,10 +181,12 @@ const process3DBeaconsData = (data: BeaconsData): ProcessedStructureData[] => {
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return otherStructures?.map(({ summary }) => ({
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id: summary['model_identifier'],
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source: summary.provider,
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+
method: sourceMethods.get(summary.provider),
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positions: `${summary['uniprot_start']}-${summary['uniprot_end']}`,
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protvistaFeatureId: summary['model_identifier'],
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downloadLink: summary['model_url'],
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-
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+
// isoform.io does not have a model page url. Link to their homepage instead.
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sourceDBLink: summary.provider === 'isoform.io' ? 'https://www.isoform.io/home' : summary['model_page_url'],
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})) || [];
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};
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@@ -358,8 +371,10 @@ class ProtvistaUniprotStructure extends LitElement {
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if (providersFrom3DBeacons.includes(source)) {
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this.modelUrl = downloadLink;
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this.structureId = undefined;
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+
this.metaInfo = undefined;
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} else {
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this.structureId = id;
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+
this.modelUrl = undefined;
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if (this.structureId.startsWith('AF-')) {
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this.metaInfo = AFMetaInfo;
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} else {
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