protvista-uniprot 4.4.4 → 4.4.6

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "protvista-uniprot",
   "description": "ProtVista tool for the UniProt website",
-  "version": "4.4.4",
+  "version": "4.4.6",
   "files": [
     "dist",
     "src"

package/src/protvista-uniprot-structure.ts

@@ -32,6 +32,17 @@ const providersFrom3DBeacons = [
   'levylab',
 ];
 
+const sourceMethods = new Map([
+  ['SWISS-MODEL', 'Modeling'],
+  ['ModelArchive', 'Modeling'],
+  ['PED', 'Modeling'],
+  ['SASBDB', 'SAS'],
+  ['isoform.io', 'Predicted'],
+  ['AlphaFill', 'Predicted'],
+  ['HEGELAB', 'Modeling'],
+  ['levylab', 'Modeling'],
+]);
+
 type UniProtKBData = {
   uniProtKBCrossReferences: UniProtKBCrossReference[];
   sequence: Sequence;
@@ -164,17 +175,18 @@ const processAFData = (data: PredictionData[]): ProcessedStructureData[] =>
   }));
 
 const process3DBeaconsData = (data: BeaconsData): ProcessedStructureData[] => {
-  const otherStructures = data.structures.filter(({ summary }) =>
+  const otherStructures = data?.structures?.filter(({ summary }) =>
     providersFrom3DBeacons.includes(summary.provider)
   );
-  return otherStructures.map(({ summary }) => ({
+  return otherStructures?.map(({ summary }) => ({
     id: summary['model_identifier'],
     source: summary.provider,
+    method: sourceMethods.get(summary.provider),
     positions: `${summary['uniprot_start']}-${summary['uniprot_end']}`,
     protvistaFeatureId: summary['model_identifier'],
     downloadLink: summary['model_url'],
     sourceDBLink: summary['model_page_url'],
-  }));
+  })) || [];
 };
 
 const AFMetaInfo = html`
@@ -294,6 +306,9 @@ class ProtvistaUniprotStructure extends LitElement {
       rawData[pdbUrl].sequence?.value === rawData[alphaFoldUrl]?.[0]?.sequence
     ) {
       afData = processAFData(rawData[alphaFoldUrl] || []);
+      this.alphamissenseAvailable = rawData[alphaFoldUrl].some(
+      (data) => data.amAnnotationsUrl
+    );
     }
     const beaconsData = process3DBeaconsData(rawData[beaconsUrl] || []);
 
@@ -304,9 +319,6 @@ class ProtvistaUniprotStructure extends LitElement {
     if (!data || !data.length) return;
 
     this.data = data;
-    this.alphamissenseAvailable = rawData[alphaFoldUrl]?.some(
-      (data) => data.amAnnotationsUrl
-    );
   }
 
   disconnectedCallback() {
@@ -360,6 +372,7 @@ class ProtvistaUniprotStructure extends LitElement {
       this.structureId = undefined;
     } else {
       this.structureId = id;
+      this.modelUrl = undefined;
       if (this.structureId.startsWith('AF-')) {
         this.metaInfo = AFMetaInfo;
       } else {