protvista-uniprot 4.4.1 → 4.4.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -1471,7 +1471,7 @@ U_.elementStyles = [], U_.shadowRootOptions = { mode: "open" }, U_[iE("elementPr
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*/
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const aZ = globalThis, FO = aZ.trustedTypes, sie = FO ? FO.createPolicy("lit-html", { createHTML: (e) => e }) : void 0, ZAe = "$lit$", Tg = `lit$${Math.random().toFixed(9).slice(2)}$`, QAe = "?" + Tg, IUe = `<${QAe}>`, Ab = document, t6 = () => Ab.createComment(""), r6 = (e) => e === null || typeof e != "object" && typeof e != "function", oZ = Array.isArray, DUe = (e) => oZ(e) || typeof e?.[Symbol.iterator] == "function", rU = `[
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\f\r]`, eA = /<(?:(!--|\/[^a-zA-Z])|(\/?[a-zA-Z][^>\s]*)|(\/?$))/g, uie = /-->/g, cie = />/g, Y0 = RegExp(`>|${rU}(?:([^\\s"'>=/]+)(${rU}*=${rU}*(?:[^
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\f\r"'\`<>=]|("|')|))|$)`, "g"), lie = /'/g, die = /"/g, JAe = /^(?:script|style|textarea|title)$/i, eCe = (e) => (t, ...r) => ({ _$litType$: e, strings: t, values: r }),
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\f\r"'\`<>=]|("|')|))|$)`, "g"), lie = /'/g, die = /"/g, JAe = /^(?:script|style|textarea|title)$/i, eCe = (e) => (t, ...r) => ({ _$litType$: e, strings: t, values: r }), Un = eCe(1), cH = eCe(2), Cb = Symbol.for("lit-noChange"), mo = Symbol.for("lit-nothing"), fie = /* @__PURE__ */ new WeakMap(), m1 = Ab.createTreeWalker(Ab, 129);
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function tCe(e, t) {
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if (!oZ(e) || !e.hasOwnProperty("raw")) throw Error("invalid template strings array");
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return sie !== void 0 ? sie.createHTML(t) : t;
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@@ -11155,7 +11155,7 @@ function doe(e, t, r) {
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return typeof n == "string" ? r.tryFindUrl(n, i) || t(n, { body: i }) : n;
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};
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})(ii || (ii = {}));
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var I, zu, lt,
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var I, zu, lt, jn, zVe = function() {
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function e() {
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this._assets = /* @__PURE__ */ new Map();
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}
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@@ -11620,7 +11620,7 @@ function qk(e, t, r) {
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var u = s.name, c = "".concat(o, ".").concat(u);
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if (n.has(c)) throw new Error("A transform with id '".concat(u, "' is already registered. Please pick a unique identifier for your transforms and/or register them only once. This is to ensure that transforms can be serialized and replayed."));
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var l = { apply: function(d, f, h) {
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return
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return jn.create(d, l, f, h);
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}, toAction: function() {
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return zu.fromTransformer(l);
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}, namespace: o, id: c, definition: s, createDefaultParams: function(d, f) {
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@@ -11726,7 +11726,7 @@ function qk(e, t, r) {
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var a = lt.get(i.transformer), o = a.definition.customSerialization ? a.definition.customSerialization.fromJSON : n;
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return { parent: i.parent, transformer: a, params: i.params ? o(i.params) : void 0, state: i.state || {}, tags: i.tags, ref: i.ref, dependsOn: i.dependsOn, version: i.version };
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};
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}(
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}(jn || (jn = {}));
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var La, Xr, GVe = function() {
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function e(t) {
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this.tree = t, this.transforms = this.tree.transforms, this.children = this.tree.children, this.dependencies = this.tree.dependencies, this.changedNodes = !1, this.changedChildren = !1, this.changedDependencies = !1, this._childMutations = void 0, this._dependencyMutations = void 0, this._stateUpdates = void 0;
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@@ -11742,7 +11742,7 @@ var La, Xr, GVe = function() {
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}, e.prototype.changeDependencies = function() {
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this.changedDependencies || (this.changedDependencies = !0, this.dependencies = this.dependencies.asMutable());
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}, Object.defineProperty(e.prototype, "root", { get: function() {
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return this.transforms.get(
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return this.transforms.get(jn.RootRef);
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}, enumerable: !1, configurable: !0 }), e.prototype.asTransient = function() {
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return this.asImmutable().asTransient();
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}, e.prototype.addChild = function(t, r) {
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@@ -11758,7 +11758,7 @@ var La, Xr, GVe = function() {
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n.remove(r), this.children.set(t, n), this.childMutations.set(t, n);
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}
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}, e.prototype.clearRoot = function() {
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var t =
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var t = jn.RootRef;
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if (this.children.get(t).size !== 0) {
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this.changeChildren();
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var r = _f();
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@@ -11775,7 +11775,7 @@ var La, Xr, GVe = function() {
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}, e.prototype.changeParent = function(t, r) {
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Wk(this.transforms, t);
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var n = this.transforms.get(t);
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this.removeChild(n.parent, t), this.addChild(r, t), this.changeNodes(), this.transforms.set(t,
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this.removeChild(n.parent, t), this.addChild(r, t), this.changeNodes(), this.transforms.set(t, jn.withParent(n, r));
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}, e.prototype.add = function(t) {
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var r = t.ref;
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this.transforms.has(t.ref) && this.transforms.get(t.ref).parent !== t.parent && function(s) {
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@@ -11792,23 +11792,23 @@ var La, Xr, GVe = function() {
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}, e.prototype.setParams = function(t, r) {
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Wk(this.transforms, t);
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var n = this.transforms.get(t);
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return !WZ(n.params, r) && (this.changedNodes || (this.changedNodes = !0, this.transforms = this.transforms.asMutable()), this.transforms.set(n.ref,
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return !WZ(n.params, r) && (this.changedNodes || (this.changedNodes = !0, this.transforms = this.transforms.asMutable()), this.transforms.set(n.ref, jn.withParams(n, r)), !0);
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}, e.prototype.setTags = function(t, r) {
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Wk(this.transforms, t);
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var n = this.transforms.get(t), i =
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var n = this.transforms.get(t), i = jn.withParams(n, r);
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return !i5e(n.tags, i.tags) && (this.changedNodes || (this.changedNodes = !0, this.transforms = this.transforms.asMutable()), this.transforms.set(n.ref, i), !0);
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}, e.prototype.assignState = function(t, r) {
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Wk(this.transforms, t);
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var n = this.transforms.get(t);
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if (this._stateUpdates && this._stateUpdates.has(t)) return
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if (this._stateUpdates && this._stateUpdates.has(t)) return jn.assignState(n.state, r), n;
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this._stateUpdates || (this._stateUpdates = /* @__PURE__ */ new Set()), this._stateUpdates.add(n.ref), this.changeNodes();
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var i =
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var i = jn.withState(n, r);
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return this.transforms.set(t, i), i;
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}, e.prototype.remove = function(t) {
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var r = this.transforms.get(t);
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if (!r) return [];
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var n = La.subtreePostOrder(this, r);
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if (t ===
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if (t === jn.RootRef) {
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if (n.pop(), n.length === 0) return n;
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this.clearRoot();
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} else {
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@@ -11868,7 +11868,7 @@ function a5e(e) {
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this.transforms = h, this.children = p, this.dependencies = m;
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}
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return Object.defineProperty(f.prototype, "root", { get: function() {
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return this.transforms.get(
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return this.transforms.get(jn.RootRef);
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}, enumerable: !1, configurable: !0 }), f.prototype.asTransient = function() {
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return new GVe(this);
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}, f;
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@@ -11905,7 +11905,7 @@ function a5e(e) {
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p.push(f);
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}
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function l(f, h, p) {
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p.push(
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p.push(jn.toJSON(f));
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}
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function d(f, h, p) {
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if (h === p) return !0;
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@@ -11916,7 +11916,7 @@ function a5e(e) {
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}
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}
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e.createEmpty = function(f) {
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var h = f ||
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var h = f || jn.createRoot();
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return r(id([[h.ref, h]]), id([[h.ref, _f()]]), id());
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}, e.create = r, e.doPostOrder = a, e.doPreOrder = u, e.subtreePostOrder = function(f, h) {
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return a(f, h, [], c);
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@@ -11925,7 +11925,7 @@ function a5e(e) {
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return u(f, f.root, h, l), { transforms: h };
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}, e.fromJSON = function(f) {
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for (var h = id().asMutable(), p = id().asMutable(), m = id().asMutable(), x = 0, g = f.transforms; x < g.length; x++) {
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var _ = g[x], v =
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var _ = g[x], v = jn.fromJSON(_);
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h.set(v.ref, v), p.has(v.ref) || p.set(v.ref, _f().asMutable()), v.ref !== v.parent && p.get(v.parent).add(v.ref);
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}
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for (var y = /* @__PURE__ */ new Set(), b = 0, w = f.transforms; b < w.length; b++) {
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@@ -12097,7 +12097,7 @@ function a5e(e) {
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for (var H = U.transforms.get(G), W = void 0; ; ) {
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H = U.transforms.get(H.parent);
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var X = j.get(H.ref);
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if (X.obj && V(X) && (W = X, q) || H.ref ===
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if (X.obj && V(X) && (W = X, q) || H.ref === jn.RootRef) return W;
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}
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}
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function P(U, j, G, V) {
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@@ -12190,28 +12190,28 @@ function a5e(e) {
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};
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});
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}, U.rootsOfType = function(H, W) {
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return W === void 0 && (W =
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return W === void 0 && (W = jn.RootRef), o(function() {
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return function(X) {
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var ee = { roots: [], cells: X.cells, type: H.type };
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return La.doPreOrder(X.tree, X.tree.transforms.get(W), ee, j), ee.roots;
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};
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});
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}, U.ofType = function(H, W) {
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return W === void 0 && (W = jn.RootRef), o(function() {
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return function(X) {
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var ee = { ret: [], cells: X.cells, type: H.type };
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return La.doPreOrder(X.tree, X.tree.transforms.get(W), ee, G), ee.ret;
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};
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});
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}, U.ofTransformer = function(H, W) {
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return W === void 0 && (W =
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return W === void 0 && (W = jn.RootRef), o(function() {
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return function(X) {
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var ee = { ret: [], cells: X.cells, t: H };
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return La.doPreOrder(X.tree, X.tree.transforms.get(W), ee, V), ee.ret;
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};
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});
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}, U.ofTransformerWithError = function(H, W) {
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return W === void 0 && (W = jn.RootRef), o(function() {
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var ee = { ret: [], cells: X.cells, t: H };
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return La.doPreOrder(X.tree, X.tree.transforms.get(W), ee, q), ee.ret;
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var d = l.next();
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if (d.done) break;
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var f = this.state.tree.transforms.get(d.value);
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if (f &&
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var h = this.to(d.value);
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return h.updateTagged(s, koe(f.tags, a, u && u.tags)), h;
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}
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if (this._current) for (var i = this._current; ; ) {
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if (!(i = this.cells.get(i.transform.parent)).obj) return;
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}
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}, r.prototype.getRootOfType = function(n) {
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if (i.obj.type === n.type && (a = i), i.transform.ref ===
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if (i.obj.type === n.type && (a = i), i.transform.ref === jn.RootRef) return a ? a.obj : void 0;
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i = this.cells.get(i.transform.parent);
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}, r;
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var a = void 0, o = r.cells.get(i);
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if (o.obj.type === n.type && (a = o), o.transform.ref === jn.RootRef) return a ? a.obj : void 0;
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var d9 = function() {
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function e(t, r) {
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var n = this;
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this.errorFree = !0, this.ev = tv.create(), this.globalContext = void 0, this.events = { cell: { stateUpdated: this.ev(), created: this.ev(), removed: this.ev() }, object: { updated: this.ev(), created: this.ev(), removed: this.ev() }, log: this.ev(), changed: this.ev(), historyUpdated: this.ev() }, this.behaviors = { currentObject: this.ev.behavior({ state: this, ref:
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this.errorFree = !0, this.ev = tv.create(), this.globalContext = void 0, this.events = { cell: { stateUpdated: this.ev(), created: this.ev(), removed: this.ev() }, object: { updated: this.ev(), created: this.ev(), removed: this.ev() }, log: this.ev(), changed: this.ev(), historyUpdated: this.ev() }, this.behaviors = { currentObject: this.ev.behavior({ state: this, ref: jn.RootRef }), isUpdating: this.ev.behavior(!1) }, this.actions = new bHe(), this.cells = /* @__PURE__ */ new Map(), this.spine = new l9.Impl(this.cells), this.tryGetCellData = function(a) {
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var o, s, u = (s = (o = n.cells.get(a)) === null || o === void 0 ? void 0 : o.obj) === null || s === void 0 ? void 0 : s.data;
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if (u === void 0) throw new Error("Cell '".concat(a, "' data undefined."));
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}, this.historyCapacity = 5, this.history = [], this.undoingHistory = !1, this.inTransaction = !1, this.inTransactionError = !1, this._inUpdate = !1, this.reverted = !1, this.updateQueue = new _He(), this._tree = La.createEmpty(
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}, this.historyCapacity = 5, this.history = [], this.undoingHistory = !1, this.inTransaction = !1, this.inTransactionError = !1, this._inUpdate = !1, this.reverted = !1, this.updateQueue = new _He(), this._tree = La.createEmpty(jn.createRoot(r && r.rootState)).asTransient();
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var i = this._tree.root;
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|
this.runTask = r.runTask, r?.historyCapacity !== void 0 && (this.historyCapacity = r.historyCapacity), this.cells.set(i.ref, { parent: this, transform: i, sourceRef: void 0, obj: t, status: "ok", state: B({}, i.state), errorText: void 0, params: { definition: {}, values: {} }, paramsNormalizedVersion: i.version, dependencies: { dependentBy: [], dependsOn: [] }, cache: {} }), this.globalContext = r && r.globalContext;
|
|
13762
13762
|
}
|
|
@@ -13811,7 +13811,7 @@ var d9 = function() {
|
|
|
13811
13811
|
var n = this.cells.get(t);
|
|
13812
13812
|
if (n) {
|
|
13813
13813
|
var i = typeof r == "function" ? r(n.state) : r;
|
|
13814
|
-
|
|
13814
|
+
jn.assignState(n.state, i) && (n.transform = this._tree.assignState(n.transform.ref, i), this.events.cell.stateUpdated.next({ state: this, ref: t, cell: n }));
|
|
13815
13815
|
}
|
|
13816
13816
|
}, e.prototype.dispose = function() {
|
|
13817
13817
|
this.ev.dispose(), this.actions.dispose();
|
|
@@ -13821,7 +13821,7 @@ var d9 = function() {
|
|
|
13821
13821
|
return typeof t == "string" ? Xr.select(t, this) : Xr.select(t(Xr.Generators), this);
|
|
13822
13822
|
}, e.prototype.applyAction = function(t, r, n) {
|
|
13823
13823
|
var i = this;
|
|
13824
|
-
return n === void 0 && (n =
|
|
13824
|
+
return n === void 0 && (n = jn.RootRef), Ve.create("Apply Action", function(a) {
|
|
13825
13825
|
var o = i.cells.get(n);
|
|
13826
13826
|
if (!o) throw new Error("'".concat(n, "' does not exist."));
|
|
13827
13827
|
if (o.status !== "ok") throw new Error("Action cannot be applied to a cell with status '".concat(o.status, "'"));
|
|
@@ -14016,7 +14016,7 @@ function THe(e, t, r) {
|
|
|
14016
14016
|
}
|
|
14017
14017
|
function PHe(e, t, r) {
|
|
14018
14018
|
var n = r.cells.get(e.ref);
|
|
14019
|
-
n &&
|
|
14019
|
+
n && jn.syncState(n.state, e.state) && r.parent.events.cell.stateUpdated.next({ state: r.parent, ref: e.ref, cell: n });
|
|
14020
14020
|
}
|
|
14021
14021
|
function f9(e, t, r, n) {
|
|
14022
14022
|
var i = e.cells.get(t), a = i.status !== r;
|
|
@@ -14048,7 +14048,7 @@ function Doe(e, t, r, n) {
|
|
|
14048
14048
|
return T5e(e, t, new Set(r), n);
|
|
14049
14049
|
}
|
|
14050
14050
|
function T5e(e, t, r, n) {
|
|
14051
|
-
if (t ===
|
|
14051
|
+
if (t === jn.RootRef) return t;
|
|
14052
14052
|
for (var i = e.transforms.get(t), a = e.children.get(i.parent).values(), o = void 0, s = !1; ; ) {
|
|
14053
14053
|
var u = a.next();
|
|
14054
14054
|
if (u.done) break;
|
|
@@ -14135,7 +14135,7 @@ function OHe(e, t) {
|
|
|
14135
14135
|
return Q(this, function(v) {
|
|
14136
14136
|
switch (v.label) {
|
|
14137
14137
|
case 0:
|
|
14138
|
-
if (n = e.oldTree, i = e.tree, a = e.cells.get(t), o = a.transform, a.transform.ref ===
|
|
14138
|
+
if (n = e.oldTree, i = e.tree, a = e.cells.get(t), o = a.transform, a.transform.ref === jn.RootRef) return [2, { action: "none" }];
|
|
14139
14139
|
if (s = e.cells.get(a.transform.parent), s?.obj === Zi.Null) return a.sourceRef = s.transform.ref, n.transforms.has(t) && a.params ? (f = a.params.values, h = a.cache, z7(o, a.obj, f, h, e.parent.globalContext), a.params = void 0, a.obj = Zi.Null, [2, { ref: t, action: "updated", obj: a.obj }]) : (a.params = void 0, [2, { ref: t, action: "created", obj: Zi.Null }]);
|
|
14140
14140
|
if (!(u = o.transformer.definition.from.length === 0 ? s : Xr.findAncestorOfType(i, e.cells, t, o.transformer.definition.from))) throw new Error("No suitable parent found for '".concat(t, "'"));
|
|
14141
14141
|
return e.spine.current = a, c = u.obj, a.sourceRef = u.transform.ref, l = DHe(e, o, c, a), n.transforms.has(t) && a.params ? [3, 2] : (a.params = l, [4, Ooe(e, a, o.transformer, c, l.values)]);
|
|
@@ -26162,7 +26162,7 @@ var Aue, Cue = new Map([[1, "H"], [2, "He"], [3, "Li"], [4, "Be"], [5, "B"], [6,
|
|
|
26162
26162
|
(function(e) {
|
|
26163
26163
|
e[e.unknown = 0] = "unknown", e[e.polymer = 1] = "polymer", e[e["non-polymer"] = 2] = "non-polymer", e[e.macrolide = 3] = "macrolide", e[e.water = 4] = "water", e[e.branched = 5] = "branched";
|
|
26164
26164
|
})(Aue || (Aue = {}));
|
|
26165
|
-
var
|
|
26165
|
+
var zn, vn, VKe = ((Uv = {})[0] = { trace: /* @__PURE__ */ new Set(), directionFrom: /* @__PURE__ */ new Set(), directionTo: /* @__PURE__ */ new Set(), backboneStart: /* @__PURE__ */ new Set(), backboneEnd: /* @__PURE__ */ new Set(), coarseBackbone: /* @__PURE__ */ new Set() }, Uv[1] = { trace: /* @__PURE__ */ new Set(["CA"]), directionFrom: /* @__PURE__ */ new Set(["C"]), directionTo: /* @__PURE__ */ new Set(["O", "OC1", "O1", "OX1", "OXT", "OT1"]), backboneStart: /* @__PURE__ */ new Set(["N"]), backboneEnd: /* @__PURE__ */ new Set(["C"]), coarseBackbone: /* @__PURE__ */ new Set(["CA", "BB", "CA1"]) }, Uv[2] = { trace: /* @__PURE__ */ new Set(["CA"]), directionFrom: /* @__PURE__ */ new Set(["C"]), directionTo: /* @__PURE__ */ new Set(["O"]), backboneStart: /* @__PURE__ */ new Set(["N"]), backboneEnd: /* @__PURE__ */ new Set(["CD"]), coarseBackbone: /* @__PURE__ */ new Set(["CA"]) }, Uv[3] = { trace: /* @__PURE__ */ new Set(["CA"]), directionFrom: /* @__PURE__ */ new Set(["C"]), directionTo: /* @__PURE__ */ new Set(["O"]), backboneStart: /* @__PURE__ */ new Set(["N"]), backboneEnd: /* @__PURE__ */ new Set(["CG"]), coarseBackbone: /* @__PURE__ */ new Set(["CA"]) }, Uv[4] = { trace: /* @__PURE__ */ new Set(["O3'", "O3*"]), directionFrom: /* @__PURE__ */ new Set(["C4'", "C4*"]), directionTo: /* @__PURE__ */ new Set(["C3'", "C3*"]), backboneStart: /* @__PURE__ */ new Set(["P"]), backboneEnd: /* @__PURE__ */ new Set(["O3'", "O3*"]), coarseBackbone: /* @__PURE__ */ new Set(["P"]) }, Uv[5] = { trace: /* @__PURE__ */ new Set(["O3'", "O3*"]), directionFrom: /* @__PURE__ */ new Set(["C3'", "C3*"]), directionTo: /* @__PURE__ */ new Set(["C1'", "C1*"]), backboneStart: /* @__PURE__ */ new Set(["P"]), backboneEnd: /* @__PURE__ */ new Set(["O3'", "O3*"]), coarseBackbone: /* @__PURE__ */ new Set(["P"]) }, Uv[6] = { trace: /* @__PURE__ */ new Set(["N4'", "N4*"]), directionFrom: /* @__PURE__ */ new Set(["N4'", "N4*"]), directionTo: /* @__PURE__ */ new Set(["C7'", "C7*"]), backboneStart: /* @__PURE__ */ new Set(["N1'", "N1*"]), backboneEnd: /* @__PURE__ */ new Set(["C'", "C*"]), coarseBackbone: /* @__PURE__ */ new Set(["P"]) }, Uv), nv = /* @__PURE__ */ new Set(["CA", "C", "N", "O", "O1", "O2", "OC1", "OC2", "OT1", "OT2", "OX1", "OXT", "H", "H1", "H2", "H3", "HA", "HN", "HXT", "BB"]), bN = /* @__PURE__ */ new Set(["P", "OP1", "OP2", "HOP2", "HOP3", "O2'", "O3'", "O4'", "O5'", "C1'", "C2'", "C3'", "C4'", "C5'", "H1'", "H2'", "H2''", "HO2'", "H3'", "H4'", "H5'", "H5''", "HO3'", "HO5'", "O2*", "O3*", "O4*", "O5*", "C1*", "C2*", "C3*", "C4*", "C5*"]), zTe = /* @__PURE__ */ new Set(["d-peptide linking", "d-peptide nh3 amino terminus", "d-peptide cooh carboxy terminus", "d-gamma-peptide, c-delta linking", "d-beta-peptide, c-gamma linking"]), GTe = /* @__PURE__ */ new Set(["l-peptide linking", "l-peptide nh3 amino terminus", "l-peptide cooh carboxy terminus", "l-gamma-peptide, c-delta linking", "l-beta-peptide, c-gamma linking"]), HKe = /* @__PURE__ */ new Set(["d-gamma-peptide, c-delta linking", "l-gamma-peptide, c-delta linking"]), qKe = /* @__PURE__ */ new Set(["d-beta-peptide, c-gamma linking", "l-beta-peptide, c-gamma linking"]), WKe = /* @__PURE__ */ new Set(["d-peptide nh3 amino terminus", "d-peptide cooh carboxy terminus", "l-peptide nh3 amino terminus", "l-peptide cooh carboxy terminus"]), VTe = /* @__PURE__ */ new Set(["peptide linking", "peptide-like"]), XKe = sa.unionMany(zTe, GTe, VTe), HTe = /* @__PURE__ */ new Set(["dna linking", "l-dna linking", "dna oh 5 prime terminus", "dna oh 3 prime terminus"]), qTe = /* @__PURE__ */ new Set(["rna linking", "l-rna linking", "rna oh 5 prime terminus", "rna oh 3 prime terminus"]), WTe = sa.unionMany(/* @__PURE__ */ new Set(["d-saccharide, beta linking", "l-saccharide, beta linking", "d-saccharide, alpha linking", "l-saccharide, alpha linking", "l-saccharide", "d-saccharide", "saccharide"]), /* @__PURE__ */ new Set(["d-saccharide 1,4 and 1,4 linking", "l-saccharide 1,4 and 1,4 linking", "d-saccharide 1,4 and 1,6 linking", "l-saccharide 1,4 and 1,6 linking"])), YKe = /* @__PURE__ */ new Set(["non-polymer", "other"]), KKe = /* @__PURE__ */ new Set(["ion"]), ZKe = /* @__PURE__ */ new Set(["lipid"]), _N = /* @__PURE__ */ new Set(["SOL", "WAT", "HOH", "H2O", "W", "DOD", "D3O", "TIP", "TIP3", "TIP4", "SPC"]), $Q = /* @__PURE__ */ new Set(["HIS", "ARG", "LYS", "ILE", "PHE", "LEU", "TRP", "ALA", "MET", "PRO", "CYS", "ASN", "VAL", "GLY", "SER", "GLN", "TYR", "ASP", "GLU", "THR", "SEC", "PYL", "UNK", "MSE", "SEP", "TPO", "PTR", "PCA", "HYP", "HSD", "HSE", "HSP", "LSN", "ASPP", "GLUP", "HID", "HIE", "HIP", "LYN", "ASH", "GLH"]), XTe = /* @__PURE__ */ new Set(["DAL", "DAR", "DSG", "DAS", "DCY", "DGL", "DGN", "DHI", "DIL", "DLE", "DLY", "MED", "DPN", "DPR", "DSN", "DTH", "DTR", "DTY", "DVA", "DNE"]), m$ = sa.unionMany($Q, XTe), QKe = /* @__PURE__ */ new Set(["NME", "ACE", "NH2", "FOR", "FMT"]), v$ = /* @__PURE__ */ new Set(["A", "C", "T", "G", "I", "U", "N"]), g$ = /* @__PURE__ */ new Set(["DA", "DC", "DT", "DG", "DI", "DU", "DN"]), kQ = /* @__PURE__ */ new Set(["APN", "CPN", "TPN", "GPN"]), JKe = /* @__PURE__ */ new Set(["A", "G", "I", "DA", "DG", "DI", "APN", "GPN"]), eZe = /* @__PURE__ */ new Set(["C", "T", "U", "DC", "DT", "DU", "CPN", "TPN"]), xN = sa.unionMany(v$, g$, kQ), s3 = sa.unionMany(m$, xN);
|
|
26166
26166
|
function $0(e, t) {
|
|
26167
26167
|
return t = t.toUpperCase(), kQ.has(t) ? 8 : XKe.has(e) ? 5 : qTe.has(e) ? 6 : HTe.has(e) ? 7 : WTe.has(e) ? 9 : _N.has(t) ? 2 : jTe.has(t) ? 3 : UTe.has(t) ? 4 : YKe.has(e) ? Xm.has(t) ? 9 : m$.has(t) ? 5 : v$.has(t) ? 6 : g$.has(t) ? 7 : 1 : 0;
|
|
26168
26168
|
}
|
|
@@ -26189,7 +26189,7 @@ function KTe(e) {
|
|
|
26189
26189
|
}
|
|
26190
26190
|
(function(e) {
|
|
26191
26191
|
e.is = Os.has, e.create = Os.create, e.SecondaryStructureMmcif = { helx_lh_27_p: 1058, helx_lh_3t_p: 2082, helx_lh_al_p: 4130, helx_lh_a_n: 524321, helx_lh_b_n: 1048609, helx_lh_ga_p: 8226, helx_lh_n: 33, helx_lh_om_p: 16418, helx_lh_ot_n: 131105, helx_lh_ot_p: 546, helx_lh_p: 34, helx_lh_pi_p: 32802, helx_lh_pp_p: 65570, helx_lh_z_n: 262177, helx_n: 1, helx_ot_n: 1, helx_ot_p: 2, helx_p: 2, helx_rh_27_p: 1090, helx_rh_3t_p: 2114, helx_rh_al_p: 4162, helx_rh_a_n: 524353, helx_rh_b_n: 1048641, helx_rh_ga_p: 8258, helx_rh_n: 65, helx_rh_om_p: 16450, helx_rh_ot_n: 131137, helx_rh_ot_p: 578, helx_rh_p: 66, helx_rh_pi_p: 32834, helx_rh_pp_p: 65602, helx_rh_z_n: 262209, strn: 4194308, turn_ot_p: 33554448, turn_p: 16, turn_ty1p_p: 67109136, turn_ty1_p: 67109008, turn_ty2p_p: 134218e3, turn_ty2_p: 134217872, turn_ty3p_p: 268435728, turn_ty3_p: 268435600, bend: 8, other: 0 }, e.SecondaryStructurePdb = { 1: 4162, 2: 16450, 3: 32834, 4: 8258, 5: 2114, 6: 4130, 7: 16418, 8: 8226, 9: 1026, 10: 65538 }, e.SecondaryStructureStride = { H: 4098, G: 2050, I: 32770, E: 8388612, B: 4194308, T: 16, C: 536870912 }, e.SecondaryStructureDssp = { H: 4098, B: 4194308, E: 8388612, G: 2050, I: 32770, T: 16, S: 8 };
|
|
26192
|
-
})(
|
|
26192
|
+
})(zn || (zn = {})), function(e) {
|
|
26193
26193
|
function t(r) {
|
|
26194
26194
|
switch (r) {
|
|
26195
26195
|
case "covalent":
|
|
@@ -29495,16 +29495,16 @@ function yQe(e, t, r) {
|
|
|
29495
29495
|
return e === "helix" ? { kind: "helix", flags: r(t) } : e === "sheet" ? { kind: "sheet", flags: r(t) } : e === "turn" || e === "bend" ? { kind: "turn", flags: r(t) } : { kind: "none" };
|
|
29496
29496
|
}
|
|
29497
29497
|
function bQe(e) {
|
|
29498
|
-
return e ===
|
|
29498
|
+
return e === zn.SecondaryStructureDssp.H || e === zn.SecondaryStructureDssp.G || e === zn.SecondaryStructureDssp.I ? "helix" : e === zn.SecondaryStructureDssp.B || e === zn.SecondaryStructureDssp.E ? "sheet" : e === zn.SecondaryStructureDssp.T ? "turn" : e === zn.SecondaryStructureDssp.S ? "bend" : "none";
|
|
29499
29499
|
}
|
|
29500
29500
|
function _Qe(e) {
|
|
29501
|
-
return Fr.is(e, 1) ?
|
|
29501
|
+
return Fr.is(e, 1) ? zn.SecondaryStructureDssp.H : Fr.is(e, 4) ? zn.SecondaryStructureDssp.E : Fr.is(e, 2) ? zn.SecondaryStructureDssp.B : Fr.is(e, 8) ? zn.SecondaryStructureDssp.G : Fr.is(e, 16) ? zn.SecondaryStructureDssp.I : Fr.is(e, 64) ? zn.SecondaryStructureDssp.T : Fr.is(e, 32) ? zn.SecondaryStructureDssp.S : 0;
|
|
29502
29502
|
}
|
|
29503
29503
|
function xQe(e) {
|
|
29504
29504
|
return Fr.is(e, 1) ? "H" : Fr.is(e, 4) ? "E" : Fr.is(e, 2) ? "B" : Fr.is(e, 8) ? "G" : Fr.is(e, 16) ? "I" : Fr.is(e, 64) ? "T" : Fr.is(e, 32) ? "S" : "-";
|
|
29505
29505
|
}
|
|
29506
29506
|
function wQe(e) {
|
|
29507
|
-
return Fr.is(e, 16) ?
|
|
29507
|
+
return Fr.is(e, 16) ? zn.SecondaryStructureDssp.I : Fr.is(e, 1) ? zn.SecondaryStructureDssp.H : Fr.is(e, 4) ? zn.SecondaryStructureDssp.E : Fr.is(e, 2) ? zn.SecondaryStructureDssp.B : Fr.is(e, 8) ? zn.SecondaryStructureDssp.G : Fr.is(e, 64) ? zn.SecondaryStructureDssp.T : Fr.is(e, 32) ? zn.SecondaryStructureDssp.S : 0;
|
|
29508
29508
|
}
|
|
29509
29509
|
function SQe(e) {
|
|
29510
29510
|
return Fr.is(e, 16) ? "I" : Fr.is(e, 1) ? "H" : Fr.is(e, 4) ? "E" : Fr.is(e, 2) ? "B" : Fr.is(e, 8) ? "G" : Fr.is(e, 64) ? "T" : Fr.is(e, 32) ? "S" : "-";
|
|
@@ -29590,7 +29590,7 @@ function pPe(e) {
|
|
|
29590
29590
|
(function(c, l, d, f) {
|
|
29591
29591
|
if (c._rowCount)
|
|
29592
29592
|
for (var h = c.beg_label_asym_id, p = c.beg_label_seq_id, m = c.beg_auth_seq_id, x = c.pdbx_beg_PDB_ins_code, g = c.end_label_seq_id, _ = c.end_auth_seq_id, v = c.pdbx_end_PDB_ins_code, y = c.pdbx_PDB_helix_class, b = c.conf_type_id, w = c.details, S = l === "label" ? p : m, T = l === "label" ? g : _, P = 0, k = c._rowCount; P < k; P++) {
|
|
29593
|
-
var $ =
|
|
29593
|
+
var $ = zn.create(y.valueKind(P) === 0 ? zn.SecondaryStructurePdb[y.value(P)] : b.valueKind(P) === 0 ? zn.SecondaryStructureMmcif[b.value(P)] : 536870912), A = { kind: "helix", flags: $, type_id: b.valueKind(P) === 0 ? b.value(P) : "helx_p", helix_class: y.value(P), details: w.valueKind(P) === 0 ? w.value(P) : void 0 }, M = { startSeqId: S.value(P), startInsCode: x.value(P), endSeqId: T.value(P), endInsCode: v.value(P), type: $, key: f.length };
|
|
29594
29594
|
f[f.length] = A;
|
|
29595
29595
|
var O = h.value(P);
|
|
29596
29596
|
if (d.has(O)) {
|
|
@@ -29603,7 +29603,7 @@ function pPe(e) {
|
|
|
29603
29603
|
for (var p = c.beg_label_asym_id, m = c.beg_label_seq_id, x = c.beg_auth_seq_id, g = c.pdbx_beg_PDB_ins_code, _ = c.end_label_seq_id, v = c.end_auth_seq_id, y = c.pdbx_end_PDB_ins_code, b = c.sheet_id, w = l === "label" ? m : x, S = l === "label" ? _ : v, T = /* @__PURE__ */ new Map(), P = f + 1, k = 0, $ = c._rowCount; k < $; k++) {
|
|
29604
29604
|
var A = b.value(k), M = void 0;
|
|
29605
29605
|
T.has(A) ? M = T.get(A) : (M = P++, T.set(A, M));
|
|
29606
|
-
var O =
|
|
29606
|
+
var O = zn.create(8388612), D = { kind: "sheet", flags: O, sheet_id: A, symmetry: void 0 }, N = { startSeqId: w.value(k), startInsCode: g.value(k), endSeqId: S.value(k), endInsCode: y.value(k), type: O, key: h.length };
|
|
29607
29607
|
h[h.length] = D;
|
|
29608
29608
|
var L = p.value(k);
|
|
29609
29609
|
if (d.has(L)) {
|
|
@@ -35529,7 +35529,7 @@ var tb, su, v_ = { dynamicBonds: I.Optional(I.Boolean(!1, { description: "Ensure
|
|
|
35529
35529
|
n.label = "".concat(a || "Selection"), n.description = Ke.elementDescription(o), n.data = o;
|
|
35530
35530
|
};
|
|
35531
35531
|
}(su || (su = {}));
|
|
35532
|
-
var wet = /* @__PURE__ */ new Set(["LI", "NA", "K", "RB", "CS", "FR"]), Aet = /* @__PURE__ */ new Set(["BE", "MG", "CA", "SR", "BA", "RA"]), Cet = /* @__PURE__ */ new Set(["ZN", "GA", "CD", "IN", "SN", "HG", "TI", "PB", "BI", "PO", "CN"]),
|
|
35532
|
+
var wet = /* @__PURE__ */ new Set(["LI", "NA", "K", "RB", "CS", "FR"]), Aet = /* @__PURE__ */ new Set(["BE", "MG", "CA", "SR", "BA", "RA"]), Cet = /* @__PURE__ */ new Set(["ZN", "GA", "CD", "IN", "SN", "HG", "TI", "PB", "BI", "PO", "CN"]), Gn, Tet = /* @__PURE__ */ new Set(["F", "CL", "BR", "I", "AT"]);
|
|
35533
35533
|
function Pet(e) {
|
|
35534
35534
|
return Tet.has(e);
|
|
35535
35535
|
}
|
|
@@ -35554,7 +35554,7 @@ function Eet(e) {
|
|
|
35554
35554
|
}
|
|
35555
35555
|
function Xn(e, t, r) {
|
|
35556
35556
|
var n, i;
|
|
35557
|
-
return r === void 0 && (r = {}), { label: e, expression: t, description: r.description || "", category: (n = r.category) !== null && n !== void 0 ? n :
|
|
35557
|
+
return r === void 0 && (r = {}), { label: e, expression: t, description: r.description || "", category: (n = r.category) !== null && n !== void 0 ? n : Gn.Misc, isHidden: !!r.isHidden, priority: r.priority || 0, referencesCurrent: !!r.referencesCurrent, get query() {
|
|
35558
35558
|
return i || (i = O6(t)), i;
|
|
35559
35559
|
}, ensureCustomProperties: r.ensureCustomProperties, getSelection: function(a, o, s) {
|
|
35560
35560
|
return J(this, void 0, void 0, function() {
|
|
@@ -35574,12 +35574,12 @@ function Xn(e, t, r) {
|
|
|
35574
35574
|
}
|
|
35575
35575
|
(function(e) {
|
|
35576
35576
|
e.Type = "Type", e.Structure = "Structure Property", e.Atom = "Atom Property", e.Bond = "Bond Property", e.Residue = "Residue Property", e.AminoAcid = "Amino Acid", e.NucleicBase = "Nucleic Base", e.Manipulate = "Manipulate Selection", e.Validation = "Validation", e.Misc = "Miscellaneous", e.Internal = "Internal";
|
|
35577
|
-
})(
|
|
35578
|
-
var Met = Xn("All", re.struct.generator.all(), { category: "", priority: 1e3 }), $et = Xn("Current Selection", re.internal.generator.current(), { category: "", referencesCurrent: !0 }), ket = Xn("Polymer", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.logic.and([re.core.rel.eq([re.ammp("entityType"), "polymer"]), re.core.str.match([re.re("(polypeptide|cyclic-pseudo-peptide|peptide-like|nucleotide|peptide nucleic acid)", "i"), re.ammp("entitySubtype")])]) })]), { category:
|
|
35577
|
+
})(Gn || (Gn = {}));
|
|
35578
|
+
var Met = Xn("All", re.struct.generator.all(), { category: "", priority: 1e3 }), $et = Xn("Current Selection", re.internal.generator.current(), { category: "", referencesCurrent: !0 }), ket = Xn("Polymer", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.logic.and([re.core.rel.eq([re.ammp("entityType"), "polymer"]), re.core.str.match([re.re("(polypeptide|cyclic-pseudo-peptide|peptide-like|nucleotide|peptide nucleic acid)", "i"), re.ammp("entitySubtype")])]) })]), { category: Gn.Type }), Iet = Xn("Trace", re.struct.modifier.union([re.struct.combinator.merge([re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "polymer"]), "chain-test": re.core.set.has([re.set("sphere", "gaussian"), re.ammp("objectPrimitive")]) })]), re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "polymer"]), "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "atom-test": re.core.set.has([re.set("CA", "P"), re.ammp("label_atom_id")]) })])])]), { category: Gn.Structure }), u3 = re.core.logic.and([re.core.rel.eq([re.ammp("entityType"), "polymer"]), re.core.str.match([re.re("(polypeptide|cyclic-pseudo-peptide|peptide-like)", "i"), re.ammp("entitySubtype")])]), TN = re.core.logic.and([re.core.rel.eq([re.ammp("entityType"), "polymer"]), re.core.str.match([re.re("(nucleotide|peptide nucleic acid)", "i"), re.ammp("entitySubtype")])]), Gb = re.core.str.match([re.re("non-polymer|(amino|carboxy) terminus|peptide-like", "i"), re.ammp("chemCompType")]), Det = Xn("Backbone", re.struct.modifier.union([re.struct.combinator.merge([re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3, "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([Gb]), "atom-test": re.core.set.has([re.set.apply(re, sa.toArray(nv)), re.ammp("label_atom_id")]) })]), re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": TN, "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([Gb]), "atom-test": re.core.set.has([re.set.apply(re, sa.toArray(bN)), re.ammp("label_atom_id")]) })])])]), { category: Gn.Structure }), Oet = Xn("Sidechain", re.struct.modifier.union([re.struct.combinator.merge([re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3, "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([Gb]), "atom-test": re.core.logic.or([re.core.logic.not([re.core.set.has([re.set.apply(re, sa.toArray(nv)), re.ammp("label_atom_id")])])]) })]), re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": TN, "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([Gb]), "atom-test": re.core.logic.or([re.core.logic.not([re.core.set.has([re.set.apply(re, sa.toArray(bN)), re.ammp("label_atom_id")])])]) })])])]), { category: Gn.Structure }), Ret = Xn("Sidechain with Trace", re.struct.modifier.union([re.struct.combinator.merge([re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3, "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([Gb]), "atom-test": re.core.logic.or([re.core.logic.not([re.core.set.has([re.set.apply(re, sa.toArray(nv)), re.ammp("label_atom_id")])]), re.core.rel.eq([re.ammp("label_atom_id"), "CA"]), re.core.logic.and([re.core.rel.eq([re.ammp("auth_comp_id"), "PRO"]), re.core.rel.eq([re.ammp("label_atom_id"), "N"])])]) })]), re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": TN, "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([Gb]), "atom-test": re.core.logic.or([re.core.logic.not([re.core.set.has([re.set.apply(re, sa.toArray(bN)), re.ammp("label_atom_id")])]), re.core.rel.eq([re.ammp("label_atom_id"), "P"])]) })])])]), { category: Gn.Structure }), Bet = Xn("Protein", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3 })]), { category: Gn.Type }), Net = Xn("Nucleic", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": TN })]), { category: Gn.Type }), Fet = Xn("Helix", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3, "residue-test": re.core.flags.hasAny([re.ammp("secondaryStructureFlags"), re.core.type.bitflags([2])]) })]), { category: Gn.Structure, ensureCustomProperties: function(e, t) {
|
|
35579
35579
|
return gd.attach(e, t);
|
|
35580
|
-
} }), Let = Xn("Beta Strand/Sheet", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3, "residue-test": re.core.flags.hasAny([re.ammp("secondaryStructureFlags"), re.core.type.bitflags([4])]) })]), { category:
|
|
35580
|
+
} }), Let = Xn("Beta Strand/Sheet", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": u3, "residue-test": re.core.flags.hasAny([re.ammp("secondaryStructureFlags"), re.core.type.bitflags([4])]) })]), { category: Gn.Structure, ensureCustomProperties: function(e, t) {
|
|
35581
35581
|
return gd.attach(e, t);
|
|
35582
|
-
} }), Uet = Xn("Water", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "water"]) })]), { category:
|
|
35582
|
+
} }), Uet = Xn("Water", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "water"]) })]), { category: Gn.Type }), jet = Xn("Ion", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entitySubtype"), "ion"]) })]), { category: Gn.Type }), zet = Xn("Lipid", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entitySubtype"), "lipid"]) })]), { category: Gn.Type }), PN = Xn("Carbohydrate", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.logic.or([re.core.rel.eq([re.ammp("entityType"), "branched"]), re.core.logic.and([re.core.rel.eq([re.ammp("entityType"), "non-polymer"]), re.core.str.match([re.re("oligosaccharide", "i"), re.ammp("entitySubtype")])])]) })]), { category: Gn.Type }), DPe = Xn("Carbohydrate with Connected", re.struct.modifier.union([re.struct.modifier.includeConnected({ 0: PN.expression, "layer-count": 1, "as-whole-residues": !0 })]), { category: Gn.Internal, isHidden: !0 }), OPe = Xn("Connected to Carbohydrate", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: DPe.expression, by: PN.expression })]), { category: Gn.Internal, isHidden: !0 }), UQ = Xn("Ligand", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: re.struct.modifier.union([re.struct.combinator.merge([re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.logic.and([re.core.logic.or([re.core.rel.eq([re.ammp("entityType"), "non-polymer"]), re.core.rel.neq([re.ammp("entityPrdId"), ""])]), re.core.logic.not([re.core.str.match([re.re("(oligosaccharide|lipid|ion)", "i"), re.ammp("entitySubtype")])])]), "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.logic.not([re.core.str.match([re.re("saccharide", "i"), re.ammp("chemCompType")])]) })]), re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "polymer"]), "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": Gb })])])]), by: re.struct.combinator.merge([re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "polymer"]), "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.set.has([re.set.apply(re, sa.toArray(s3)), re.ammp("label_comp_id")]) })]), re.struct.generator.atomGroups({ "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.core.set.has([re.set.apply(re, sa.toArray(QKe)), re.ammp("label_comp_id")]) })]) })]), { category: Gn.Type }), RPe = Xn("Ligand with Connected", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: re.struct.modifier.union([re.struct.modifier.includeConnected({ 0: UQ.expression, "layer-count": 1, "as-whole-residues": !0, "bond-test": re.core.flags.hasAny([re.struct.bondProperty.flags(), re.core.type.bitflags([3])]) })]), by: PN.expression })]), { category: Gn.Internal, isHidden: !0 }), BPe = Xn("Connected to Ligand", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: RPe.expression, by: UQ.expression })]), { category: Gn.Internal, isHidden: !0 }), Get = Xn("Connected to Ligand or Carbohydrate", re.struct.modifier.union([re.struct.combinator.merge([OPe.expression, BPe.expression])]), { category: Gn.Internal, isHidden: !0 }), Vet = Xn("Disulfide Bridges", re.struct.modifier.union([re.struct.combinator.merge([re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.filter.isConnectedTo({ 0: re.struct.generator.atomGroups({ "residue-test": re.core.set.has([re.set("CYS"), re.ammp("auth_comp_id")]), "atom-test": re.core.set.has([re.set("SG"), re.ammp("label_atom_id")]) }), target: re.struct.generator.atomGroups({ "residue-test": re.core.set.has([re.set("CYS"), re.ammp("auth_comp_id")]), "atom-test": re.core.set.has([re.set("SG"), re.ammp("label_atom_id")]) }), "bond-test": !0 })])]), re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.modifier.union([re.struct.generator.bondedAtomicPairs({ 0: re.core.flags.hasAny([re.struct.bondProperty.flags(), re.core.type.bitflags([8])]) })])])])])]), { category: Gn.Bond }), Het = Xn("NOS Bridges", re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.filter.isConnectedTo({ 0: re.struct.generator.atomGroups({ "residue-test": re.core.set.has([re.set("CSO", "LYS"), re.ammp("auth_comp_id")]), "atom-test": re.core.set.has([re.set("OD", "NZ"), re.ammp("label_atom_id")]) }), target: re.struct.generator.atomGroups({ "residue-test": re.core.set.has([re.set("CSO", "LYS"), re.ammp("auth_comp_id")]), "atom-test": re.core.set.has([re.set("OD", "NZ"), re.ammp("label_atom_id")]) }), "bond-test": !0 })])]), { category: Gn.Bond }), qet = Xn("Non-standard Residues in Polymers", re.struct.modifier.union([re.struct.generator.atomGroups({ "entity-test": re.core.rel.eq([re.ammp("entityType"), "polymer"]), "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": re.ammp("isNonStandard") })]), { category: Gn.Residue }), Wet = Xn("Coarse Elements", re.struct.modifier.union([re.struct.generator.atomGroups({ "chain-test": re.core.set.has([re.set("sphere", "gaussian"), re.ammp("objectPrimitive")]) })]), { category: Gn.Type }), Xet = Xn("Rings in Residues", re.struct.modifier.union([re.struct.generator.rings()]), { category: Gn.Residue }), Yet = Xn("Aromatic Rings in Residues", re.struct.modifier.union([re.struct.generator.rings({ "only-aromatic": !0 })]), { category: Gn.Residue }), Ket = Xn("Surrounding Residues (5 Å) of Selection", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: re.struct.modifier.includeSurroundings({ 0: re.internal.generator.current(), radius: 5, "as-whole-residues": !0 }), by: re.internal.generator.current() })]), { description: "Select residues within 5 Å of the current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), Zet = Xn("Surrounding Ligands (5 Å) of Selection", re.struct.modifier.union([re.struct.modifier.surroundingLigands({ 0: re.internal.generator.current(), radius: 5, "include-water": !0 })]), { description: "Select ligand components within 5 Å of the current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), Qet = Xn("Surrounding Atoms (5 Å) of Selection", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: re.struct.modifier.includeSurroundings({ 0: re.internal.generator.current(), radius: 5, "as-whole-residues": !1 }), by: re.internal.generator.current() })]), { description: "Select atoms within 5 Å of the current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), Jet = Xn("Inverse / Complement of Selection", re.struct.modifier.union([re.struct.modifier.exceptBy({ 0: re.struct.generator.all(), by: re.internal.generator.current() })]), { description: "Select everything not in the current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), ett = Xn("Residues Covalently Bonded to Selection", re.struct.modifier.union([re.struct.modifier.includeConnected({ 0: re.internal.generator.current(), "layer-count": 1, "as-whole-residues": !0 })]), { description: "Select residues covalently bonded to current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), ttt = Xn("Covalently Bonded Component", re.struct.modifier.union([re.struct.modifier.includeConnected({ 0: re.internal.generator.current(), "fixed-point": !0 })]), { description: "Select covalently bonded component based on current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), rtt = Xn("Residues with Cov. or Metallic Bond to Selection", re.struct.modifier.union([re.struct.modifier.includeConnected({ 0: re.internal.generator.current(), "layer-count": 1, "as-whole-residues": !0, "bond-test": re.core.flags.hasAny([re.struct.bondProperty.flags(), re.core.type.bitflags([3])]) })]), { description: "Select residues with covalent or metallic bond to current selection.", category: Gn.Manipulate, referencesCurrent: !0 }), ntt = Xn("Whole Residues of Selection", re.struct.modifier.union([re.struct.modifier.wholeResidues({ 0: re.internal.generator.current() })]), { description: "Expand current selection to whole residues.", category: Gn.Manipulate, referencesCurrent: !0 }), itt = [[["HIS"], "Histidine"], [["ARG"], "Arginine"], [["LYS"], "Lysine"], [["ILE"], "Isoleucine"], [["PHE"], "Phenylalanine"], [["LEU"], "Leucine"], [["TRP"], "Tryptophan"], [["ALA"], "Alanine"], [["MET"], "Methionine"], [["PRO"], "Proline"], [["CYS"], "Cysteine"], [["ASN"], "Asparagine"], [["VAL"], "Valine"], [["GLY"], "Glycine"], [["SER"], "Serine"], [["GLN"], "Glutamine"], [["TYR"], "Tyrosine"], [["ASP"], "Aspartic Acid"], [["GLU"], "Glutamic Acid"], [["THR"], "Threonine"], [["SEC"], "Selenocysteine"], [["PYL"], "Pyrrolysine"], [["UNK"], "Unknown"]].sort(function(e, t) {
|
|
35583
35583
|
return e[1] < t[1] ? -1 : e[1] > t[1] ? 1 : 0;
|
|
35584
35584
|
}), att = [[["A", "DA"], "Adenosine"], [["C", "DC"], "Cytidine"], [["T", "DT"], "Thymidine"], [["G", "DG"], "Guanosine"], [["I", "DI"], "Inosine"], [["U", "DU"], "Uridine"], [["N", "DN"], "Unknown"]].sort(function(e, t) {
|
|
35585
35585
|
return e[1] < t[1] ? -1 : e[1] > t[1] ? 1 : 0;
|
|
@@ -35594,9 +35594,9 @@ var Fq, pP, Lq, ott = sa.unionMany($Q, v$, g$, _N), Co = { all: Met, current: $e
|
|
|
35594
35594
|
function e() {
|
|
35595
35595
|
var t, r;
|
|
35596
35596
|
this.list = [], this.options = [], this.version = 1, (t = this.list).push.apply(t, Ir(Ir(Ir([], Object.values(Co), !1), itt.map(function(n) {
|
|
35597
|
-
return Wce(n,
|
|
35597
|
+
return Wce(n, Gn.AminoAcid);
|
|
35598
35598
|
}), !1), att.map(function(n) {
|
|
35599
|
-
return Wce(n,
|
|
35599
|
+
return Wce(n, Gn.NucleicBase);
|
|
35600
35600
|
}), !1)), (r = this.options).push.apply(r, this.list.map(function(n) {
|
|
35601
35601
|
return [n, n.label, n.category];
|
|
35602
35602
|
}));
|
|
@@ -38501,15 +38501,15 @@ var Wrt = { name: "residue-name", label: "Residue Name", category: Bi.Residue, f
|
|
|
38501
38501
|
return !!e.structure;
|
|
38502
38502
|
} }, iEe = { alphaHelix: 16711808, threeTenHelix: 10485888, piHelix: 6291584, betaTurn: 6324479, betaStrand: 16762880, coil: 16777215, bend: 6740169, turn: 45670, dna: 11403518, rna: 16580962, carbohydrate: 10921722 }, sW = pt(8421504), uW = { saturation: I.Numeric(-1, { min: -6, max: 6, step: 0.1 }), lightness: I.Numeric(0, { min: -6, max: 6, step: 0.1 }), colors: I.MappedStatic("default", { default: I.EmptyGroup(), custom: I.Group(ON(iEe)) }) };
|
|
38503
38503
|
function Ple(e, t, r, n) {
|
|
38504
|
-
var i =
|
|
38504
|
+
var i = zn.create(0);
|
|
38505
38505
|
if (n && Le.isAtomic(t)) {
|
|
38506
38506
|
var a = n.get(t.invariantId);
|
|
38507
38507
|
a && (i = a.type[a.getIndex(t.residueIndex[r])]);
|
|
38508
38508
|
}
|
|
38509
|
-
if (
|
|
38510
|
-
if (
|
|
38511
|
-
if (
|
|
38512
|
-
if (
|
|
38509
|
+
if (zn.is(i, 2)) return zn.is(i, 2048) ? e.threeTenHelix : zn.is(i, 32768) ? e.piHelix : e.alphaHelix;
|
|
38510
|
+
if (zn.is(i, 4)) return e.betaStrand;
|
|
38511
|
+
if (zn.is(i, 8)) return e.bend;
|
|
38512
|
+
if (zn.is(i, 16)) return e.turn;
|
|
38513
38513
|
var o = OQ(t, r);
|
|
38514
38514
|
return o === 7 ? e.dna : o === 6 ? e.rna : o === 9 ? e.carbohydrate : o === 5 ? e.coil : sW;
|
|
38515
38515
|
}
|
|
@@ -42031,14 +42031,14 @@ Qm.create({ name: "built-in.animate-assembly-unwind", display: { name: "Unwind A
|
|
|
42031
42031
|
}
|
|
42032
42032
|
return { durationInMs: I.Numeric(3e3, { min: 100, max: 1e4, step: 100 }), playOnce: I.Boolean(!1), target: I.Select(t[0][0], t) };
|
|
42033
42033
|
}, canApply: function(e) {
|
|
42034
|
-
var t = e.state.data, r =
|
|
42034
|
+
var t = e.state.data, r = jn.RootRef;
|
|
42035
42035
|
return { canApply: t.select(Xr.Generators.ofType(ce.Molecule.Structure.Representation3D, r)).length > 0 };
|
|
42036
42036
|
}, getDuration: function(e) {
|
|
42037
42037
|
return { kind: "fixed", durationMs: e.durationInMs };
|
|
42038
42038
|
}, initialState: function() {
|
|
42039
42039
|
return { t: 0 };
|
|
42040
42040
|
}, setup: function(e, t, r) {
|
|
42041
|
-
for (var n = r.state.data, i = e.target && e.target !== "all" ? e.target :
|
|
42041
|
+
for (var n = r.state.data, i = e.target && e.target !== "all" ? e.target : jn.RootRef, a = n.select(Xr.Generators.ofType(ce.Molecule.Structure.Representation3D, i)), o = n.build(), s = !1, u = 0, c = a; u < c.length; u++) {
|
|
42042
42042
|
var l = c[u];
|
|
42043
42043
|
n.select(Xr.Generators.ofTransformer(rt.Representation.UnwindStructureAssemblyRepresentation3D, l.transform.ref)).length > 0 || (s = !0, o.to(l).apply(rt.Representation.UnwindStructureAssemblyRepresentation3D, { t: 0 }, { tags: "animate-assembly-unwind" }));
|
|
42044
42044
|
}
|
|
@@ -42058,7 +42058,7 @@ Qm.create({ name: "built-in.animate-assembly-unwind", display: { name: "Unwind A
|
|
|
42058
42058
|
return Q(this, function(h) {
|
|
42059
42059
|
switch (h.label) {
|
|
42060
42060
|
case 0:
|
|
42061
|
-
if (n = r.plugin.state.data, i = r.params.target && r.params.target !== "all" ? r.params.target :
|
|
42061
|
+
if (n = r.plugin.state.data, i = r.params.target && r.params.target !== "all" ? r.params.target : jn.RootRef, (a = n.select(Xr.Generators.ofTransformer(rt.Representation.UnwindStructureAssemblyRepresentation3D, i))).length === 0) return [2, { kind: "finished" }];
|
|
42062
42062
|
for (o = n.build(), s = (t.current - t.lastApplied) / r.params.durationInMs, u = e.t + s, c = !1, r.params.playOnce && u >= 1 ? (c = !0, u = 1) : u %= 1, l = 0, d = a; l < d.length; l++) f = d[l], o.to(f).update({ t: u });
|
|
42063
42063
|
return [4, Rr.State.Update(r.plugin, { state: n, tree: o, options: { doNotLogTiming: !0 } })];
|
|
42064
42064
|
case 1:
|
|
@@ -46282,7 +46282,7 @@ void main() {
|
|
|
46282
46282
|
gl_FragColor = vec4(0.0);
|
|
46283
46283
|
}
|
|
46284
46284
|
}
|
|
46285
|
-
`),
|
|
46285
|
+
`), qn, VEe = function() {
|
|
46286
46286
|
function e(t, r, n, i, a, o) {
|
|
46287
46287
|
this.webgl = t;
|
|
46288
46288
|
var s, u = t.extensions, c = t.resources, l = t.isWebGL2;
|
|
@@ -46384,12 +46384,12 @@ void main() {
|
|
|
46384
46384
|
var o = function(s) {
|
|
46385
46385
|
var u = 100 * s.scale, c = function(d, f) {
|
|
46386
46386
|
var h = gt.createState(512, 256, f), p = 100 * d.scale, m = d.radiusScale * p, x = d.showLabels ? 100 * d.labelScale / 3 : 0, g = C.scale(C(), C.unitX, p - x), _ = C.scale(C(), C.unitY, p - x), v = C.scale(C(), C.unitZ, p - x), y = { radiusTop: m, radiusBottom: m, radialSegments: 32 };
|
|
46387
|
-
if (h.currentGroup =
|
|
46388
|
-
C.scale(g, g, 0.5), C.scale(_, _, 0.5), C.scale(v, v, 0.5), h.currentGroup =
|
|
46387
|
+
if (h.currentGroup = qn.Origin, An(h, C.origin, m, 2), h.currentGroup = qn.X, An(h, g, m, 2), mn(h, C.origin, g, 1, y), h.currentGroup = qn.Y, An(h, _, m, 2), mn(h, C.origin, _, 1, y), h.currentGroup = qn.Z, An(h, v, m, 2), mn(h, C.origin, v, 1, y), d.showPlanes) {
|
|
46388
|
+
C.scale(g, g, 0.5), C.scale(_, _, 0.5), C.scale(v, v, 0.5), h.currentGroup = qn.XY, gt.addTriangle(h, C.origin, g, _), gt.addTriangle(h, C.origin, _, g);
|
|
46389
46389
|
var b = C.add(C(), g, _);
|
|
46390
|
-
gt.addTriangle(h, b, g, _), gt.addTriangle(h, b, _, g), h.currentGroup =
|
|
46390
|
+
gt.addTriangle(h, b, g, _), gt.addTriangle(h, b, _, g), h.currentGroup = qn.XZ, gt.addTriangle(h, C.origin, g, v), gt.addTriangle(h, C.origin, v, g);
|
|
46391
46391
|
var w = C.add(C(), g, v);
|
|
46392
|
-
gt.addTriangle(h, w, g, v), gt.addTriangle(h, w, v, g), h.currentGroup =
|
|
46392
|
+
gt.addTriangle(h, w, g, v), gt.addTriangle(h, w, v, g), h.currentGroup = qn.YZ, gt.addTriangle(h, C.origin, _, v), gt.addTriangle(h, C.origin, v, _);
|
|
46393
46393
|
var S = C.add(C(), _, v);
|
|
46394
46394
|
gt.addTriangle(h, S, _, v), gt.addTriangle(h, S, v, _);
|
|
46395
46395
|
}
|
|
@@ -46398,19 +46398,19 @@ void main() {
|
|
|
46398
46398
|
c.setBoundingSphere(we.create(C.create(u / 2, u / 2, u / 2), u + u / 4));
|
|
46399
46399
|
var l = function(d) {
|
|
46400
46400
|
switch (d) {
|
|
46401
|
-
case
|
|
46401
|
+
case qn.X:
|
|
46402
46402
|
return s.colorX;
|
|
46403
|
-
case
|
|
46403
|
+
case qn.Y:
|
|
46404
46404
|
return s.colorY;
|
|
46405
|
-
case
|
|
46405
|
+
case qn.Z:
|
|
46406
46406
|
return s.colorZ;
|
|
46407
|
-
case
|
|
46407
|
+
case qn.XY:
|
|
46408
46408
|
return s.planeColorXY;
|
|
46409
|
-
case
|
|
46409
|
+
case qn.XZ:
|
|
46410
46410
|
return s.planeColorXZ;
|
|
46411
|
-
case
|
|
46411
|
+
case qn.YZ:
|
|
46412
46412
|
return s.planeColorYZ;
|
|
46413
|
-
case
|
|
46413
|
+
case qn.Origin:
|
|
46414
46414
|
return s.originColor;
|
|
46415
46415
|
default:
|
|
46416
46416
|
return Ur.grey;
|
|
@@ -46427,16 +46427,16 @@ void main() {
|
|
|
46427
46427
|
var o = function(s) {
|
|
46428
46428
|
var u = 100 * s.scale, c = function(d, f) {
|
|
46429
46429
|
var h = Yh.create(d, 8, 8, f), p = 100 * d.scale, m = C.scale(C(), C.unitX, p), x = C.scale(C(), C.unitY, p), g = C.scale(C(), C.unitZ, p), _ = 100 * d.labelScale;
|
|
46430
|
-
return h.add(d.labelX, m[0], m[1], m[2], 0, _,
|
|
46430
|
+
return h.add(d.labelX, m[0], m[1], m[2], 0, _, qn.X), h.add(d.labelY, x[0], x[1], x[2], 0, _, qn.Y), h.add(d.labelZ, g[0], g[1], g[2], 0, _, qn.Z), h.getText();
|
|
46431
46431
|
}(s, void 0);
|
|
46432
46432
|
c.setBoundingSphere(we.create(C.create(u / 2, u / 2, u / 2), u));
|
|
46433
46433
|
var l = function(d) {
|
|
46434
46434
|
switch (d) {
|
|
46435
|
-
case
|
|
46435
|
+
case qn.X:
|
|
46436
46436
|
return s.labelColorX;
|
|
46437
|
-
case
|
|
46437
|
+
case qn.Y:
|
|
46438
46438
|
return s.labelColorY;
|
|
46439
|
-
case
|
|
46439
|
+
case qn.Z:
|
|
46440
46440
|
return s.labelColorZ;
|
|
46441
46441
|
default:
|
|
46442
46442
|
return Ur.grey;
|
|
@@ -46456,24 +46456,24 @@ void main() {
|
|
|
46456
46456
|
return this.props.axes.name === "on";
|
|
46457
46457
|
}, enumerable: !1, configurable: !0 }), e.prototype.getLoci = function(t) {
|
|
46458
46458
|
var r = t.objectId, n = t.groupId, i = t.instanceId;
|
|
46459
|
-
return (this.meshRenderObject && r === this.meshRenderObject.id || this.textRenderObject && r === this.textRenderObject.id) && n !==
|
|
46459
|
+
return (this.meshRenderObject && r === this.meshRenderObject.id || this.textRenderObject && r === this.textRenderObject.id) && n !== qn.None ? function(a, o, s) {
|
|
46460
46460
|
return NN("camera-axes", a, [{ groupId: o, instanceId: s }], void 0, function() {
|
|
46461
46461
|
return function(u, c) {
|
|
46462
46462
|
var l = c.props.axes, d = l.name === "on" ? l.params.labelX : "X", f = l.name === "on" ? l.params.labelY : "Y", h = l.name === "on" ? l.params.labelZ : "Z";
|
|
46463
46463
|
switch (u) {
|
|
46464
|
-
case
|
|
46464
|
+
case qn.X:
|
|
46465
46465
|
return "".concat(d, " Axis");
|
|
46466
|
-
case
|
|
46466
|
+
case qn.Y:
|
|
46467
46467
|
return "".concat(f, " Axis");
|
|
46468
|
-
case
|
|
46468
|
+
case qn.Z:
|
|
46469
46469
|
return "".concat(h, " Axis");
|
|
46470
|
-
case
|
|
46470
|
+
case qn.XY:
|
|
46471
46471
|
return "".concat(d).concat(f, " Plane");
|
|
46472
|
-
case
|
|
46472
|
+
case qn.XZ:
|
|
46473
46473
|
return "".concat(d).concat(h, " Plane");
|
|
46474
|
-
case
|
|
46474
|
+
case qn.YZ:
|
|
46475
46475
|
return "".concat(f).concat(h, " Plane");
|
|
46476
|
-
case
|
|
46476
|
+
case qn.Origin:
|
|
46477
46477
|
return "Origin";
|
|
46478
46478
|
default:
|
|
46479
46479
|
return "Axes";
|
|
@@ -46503,7 +46503,7 @@ function wW(e) {
|
|
|
46503
46503
|
}
|
|
46504
46504
|
(function(e) {
|
|
46505
46505
|
e[e.None = 0] = "None", e[e.X = 1] = "X", e[e.Y = 2] = "Y", e[e.Z = 3] = "Z", e[e.XY = 4] = "XY", e[e.XZ = 5] = "XZ", e[e.YZ = 6] = "YZ", e[e.Origin = 7] = "Origin";
|
|
46506
|
-
})(
|
|
46506
|
+
})(qn || (qn = {}));
|
|
46507
46507
|
var iot = { transparentBackground: I.Boolean(!1), dpoitIterations: I.Numeric(2, { min: 1, max: 10, step: 1 }), multiSample: I.Group(UEe), postprocessing: I.Group(LEe), marking: I.Group(GEe), cameraHelper: I.Group(WN) }, aot = function() {
|
|
46508
46508
|
function e(t, r, n, i, a, o, s, u, c) {
|
|
46509
46509
|
this.webgl = t, this.renderer = n, this.scene = i, this.camera = a, this._width = 0, this._height = 0, this._camera = new _a(), this.props = B(B({}, I.getDefaultValues(iot)), c), this.drawPass = new VEe(t, r, 128, 128, s, u), this.multiSamplePass = new U9(t, this.drawPass), this.multiSampleHelper = new jEe(this.multiSamplePass), this.helper = { camera: new HEe(t, this.props.cameraHelper), debug: o.debug, handle: o.handle }, this.setSize(1024, 768);
|
|
@@ -47096,18 +47096,18 @@ var hot = Object.freeze({ __proto__: null, Canvas3DSetSettings: Cfe, registerDef
|
|
|
47096
47096
|
return e !== null && e.apply(this, arguments) || this;
|
|
47097
47097
|
}
|
|
47098
47098
|
return Kt(t, e), t.prototype.register = function() {
|
|
47099
|
-
var r = this, n =
|
|
47099
|
+
var r = this, n = qn.None, i = 0;
|
|
47100
47100
|
this.subscribeObservable(this.ctx.behaviors.interaction.click, function(a) {
|
|
47101
47101
|
var o = a.current;
|
|
47102
47102
|
if (r.ctx.canvas3d && wW(o.loci)) {
|
|
47103
47103
|
var s = o.loci.elements[0].groupId;
|
|
47104
|
-
if (s ===
|
|
47104
|
+
if (s === qn.None) return n = qn.None, void (i = 0);
|
|
47105
47105
|
var u, c, l = r.ctx.canvas3d.camera;
|
|
47106
|
-
if (s >=
|
|
47107
|
-
n =
|
|
47106
|
+
if (s >= qn.X && s <= qn.Z) {
|
|
47107
|
+
n = qn.None, i = 0;
|
|
47108
47108
|
var d = C.sub(C(), l.target, l.position), f = C.cross(C(), d, l.up);
|
|
47109
47109
|
(c = C())[s - 1] = 1, u = C.cross(C(), c, f), C.magnitude(u) === 0 && (u = d);
|
|
47110
|
-
} else n === s ? i = (i + 1) % 2 : (n = s, i = 0), s ===
|
|
47110
|
+
} else n === s ? i = (i + 1) % 2 : (n = s, i = 0), s === qn.XY ? (c = i ? C.unitX : C.unitY, u = C.negUnitZ) : s === qn.XZ ? (c = i ? C.unitX : C.unitZ, u = C.negUnitY) : (c = i ? C.unitY : C.unitZ, u = C.negUnitX);
|
|
47111
47111
|
r.ctx.canvas3d.requestCameraReset({ snapshot: function(h, p) {
|
|
47112
47112
|
return p.getInvariantFocus(h.boundingSphereVisible.center, h.boundingSphereVisible.radius, c, u);
|
|
47113
47113
|
} });
|
|
@@ -47483,9 +47483,9 @@ var Zj = B({}, QEe), sJ = { isBuried: mS.Dynamic(Due("computed", "accessible-sur
|
|
|
47483
47483
|
}, t;
|
|
47484
47484
|
}(xn.Handler), params: function() {
|
|
47485
47485
|
return { autoAttach: I.Boolean(!1), showTooltip: I.Boolean(!0) };
|
|
47486
|
-
} }), Xi, Mfe = Xn("Buried Protein Residues", re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.modifier.union([re.struct.generator.atomGroups({ "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": sJ.isBuried.symbol() })])])]), { description: "Select buried protein residues.", category:
|
|
47486
|
+
} }), Xi, Mfe = Xn("Buried Protein Residues", re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.modifier.union([re.struct.generator.atomGroups({ "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": sJ.isBuried.symbol() })])])]), { description: "Select buried protein residues.", category: Gn.Residue, ensureCustomProperties: function(e, t) {
|
|
47487
47487
|
return ud.attach(e, t);
|
|
47488
|
-
} }), $fe = Xn("Accessible Protein Residues", re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.modifier.union([re.struct.generator.atomGroups({ "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": sJ.isAccessible.symbol() })])])]), { description: "Select accessible protein residues.", category:
|
|
47488
|
+
} }), $fe = Xn("Accessible Protein Residues", re.struct.modifier.union([re.struct.modifier.wholeResidues([re.struct.modifier.union([re.struct.generator.atomGroups({ "chain-test": re.core.rel.eq([re.ammp("objectPrimitive"), "atomistic"]), "residue-test": sJ.isAccessible.symbol() })])])]), { description: "Select accessible protein residues.", category: Gn.Residue, ensureCustomProperties: function(e, t) {
|
|
47489
47489
|
return ud.attach(e, t);
|
|
47490
47490
|
} });
|
|
47491
47491
|
function Fn(e, t) {
|
|
@@ -50183,7 +50183,7 @@ var But = /* @__PURE__ */ new Set([wi.TargetSel, wi.TargetRepr, wi.SurrSel, wi.S
|
|
|
50183
50183
|
}, t.prototype.register = function(r) {
|
|
50184
50184
|
var n = this;
|
|
50185
50185
|
this.subscribeObservable(this.plugin.managers.structure.focus.behaviors.current, function(i) {
|
|
50186
|
-
i ? n.focus(i.loci) : n.clear(
|
|
50186
|
+
i ? n.focus(i.loci) : n.clear(jn.RootRef);
|
|
50187
50187
|
});
|
|
50188
50188
|
}, t.prototype.update = function(r) {
|
|
50189
50189
|
return J(this, void 0, void 0, function() {
|
|
@@ -53039,7 +53039,7 @@ Qm.create({ name: "built-in.animate-state-interpolation", display: { name: "Anim
|
|
|
53039
53039
|
case 0:
|
|
53040
53040
|
if ((n = r.plugin.managers.snapshot.state.entries).size < 2) return [2, { kind: "finished" }];
|
|
53041
53041
|
if (i = t.current % r.params.transtionDurationInMs / r.params.transtionDurationInMs, a = Math.floor(t.current / r.params.transtionDurationInMs) % n.size, (o = Math.ceil(t.current / r.params.transtionDurationInMs)) === a && o++, o %= n.size, s = n.get(a).snapshot, u = n.get(o).snapshot, !s.data || !u.data) return [2, { kind: "skip" }];
|
|
53042
|
-
for (c = s.data.tree.transforms, l = u.data.tree.transforms, d = r.plugin.state.data, f = d.build(), h = 0, p = c; h < p.length; h++) for (m = p[h], x = 0, g = l; x < g.length; x++) (_ = g[x]).ref === m.ref && _.version !== m.version && (v =
|
|
53042
|
+
for (c = s.data.tree.transforms, l = u.data.tree.transforms, d = r.plugin.state.data, f = d.build(), h = 0, p = c; h < p.length; h++) for (m = p[h], x = 0, g = l; x < g.length; x++) (_ = g[x]).ref === m.ref && _.version !== m.version && (v = jn.fromJSON(m), y = jn.fromJSON(_), (b = d.cells.get(m.ref)) && (w = void 0, w = v.transformer.definition.interpolate ? v.transformer.definition.interpolate(v.params, y.params, i, r.plugin) : i <= 0.5 ? v.params : y.params, f6(b, w) || f.to(m.ref).update(w)));
|
|
53043
53043
|
return [4, Rr.State.Update(r.plugin, { state: d, tree: f, options: { doNotLogTiming: !0 } })];
|
|
53044
53044
|
case 1:
|
|
53045
53045
|
return S.sent(), [2, { kind: "next", state: {} }];
|
|
@@ -55321,7 +55321,7 @@ var yz = "measurement-group", GI = "measurement-order-label", sdt = { distanceUn
|
|
|
55321
55321
|
return Kt(t, e), t.prototype.stateUpdated = function() {
|
|
55322
55322
|
this.behaviors.state.next(this.state);
|
|
55323
55323
|
}, t.prototype.getGroup = function() {
|
|
55324
|
-
var r = this.plugin.state.data, n = Xr.findTagInSubtree(r.tree,
|
|
55324
|
+
var r = this.plugin.state.data, n = Xr.findTagInSubtree(r.tree, jn.RootRef, yz), i = this.plugin.state.data.build();
|
|
55325
55325
|
return n ? i.to(n) : i.toRoot().group(rt.Misc.CreateGroup, { label: "Measurements" }, { tags: yz });
|
|
55326
55326
|
}, t.prototype.setOptions = function(r) {
|
|
55327
55327
|
return J(this, void 0, void 0, function() {
|
|
@@ -55436,7 +55436,7 @@ var yz = "measurement-group", GI = "measurement-order-label", sdt = { distanceUn
|
|
|
55436
55436
|
});
|
|
55437
55437
|
});
|
|
55438
55438
|
}, t.prototype.getTransforms = function(r) {
|
|
55439
|
-
var n = this.plugin.state.data, i = Xr.findTagInSubtree(n.tree,
|
|
55439
|
+
var n = this.plugin.state.data, i = Xr.findTagInSubtree(n.tree, jn.RootRef, yz), a = i ? n.select(Xr.Generators.ofTransformer(r, i)) : this._empty;
|
|
55440
55440
|
return a.length === 0 ? this._empty : a;
|
|
55441
55441
|
}, t.prototype.sync = function() {
|
|
55442
55442
|
for (var r = [], n = 0, i = this.getTransforms(rt.Representation.StructureSelectionsLabel3D); n < i.length; n++) {
|
|
@@ -56804,7 +56804,7 @@ var eX = Ym.createProvider({ label: "Helix Orientation", descriptor: Hu({ name:
|
|
|
56804
56804
|
});
|
|
56805
56805
|
} });
|
|
56806
56806
|
function Td(e) {
|
|
56807
|
-
return
|
|
56807
|
+
return zn.is(e, 2);
|
|
56808
56808
|
}
|
|
56809
56809
|
function SJ(e, t, r) {
|
|
56810
56810
|
switch (r === void 0 && (r = {}), e.kind) {
|
|
@@ -56815,7 +56815,7 @@ function SJ(e, t, r) {
|
|
|
56815
56815
|
return new lft(e, t);
|
|
56816
56816
|
}
|
|
56817
56817
|
}
|
|
56818
|
-
var rD =
|
|
56818
|
+
var rD = zn.create(536870912);
|
|
56819
56819
|
function TMe(e, t) {
|
|
56820
56820
|
return { center: ft.create(e, t), centerPrev: ft.create(e, t), centerNext: ft.create(e, t), first: !1, last: !1, initial: !1, final: !1, secStrucFirst: !1, secStrucLast: !1, secStrucType: rD, moleculeType: 0, coarseBackboneFirst: !1, coarseBackboneLast: !1, isCoarseBackbone: !1, p0: C(), p1: C(), p2: C(), p3: C(), p4: C(), d12: C(), d23: C() };
|
|
56821
56821
|
}
|
|
@@ -56851,7 +56851,7 @@ var Ar = C(), HI = C(), qI = C(), cft = function() {
|
|
|
56851
56851
|
return rD;
|
|
56852
56852
|
}, e.prototype.setControlPoint = function(t, r, n, i, a) {
|
|
56853
56853
|
(function(o) {
|
|
56854
|
-
return
|
|
56854
|
+
return zn.is(o, 4);
|
|
56855
56855
|
})(a) || this.helixOrientationCenters && Td(a) ? C.scale(t, C.add(t, r, C.add(t, i, C.add(t, n, n))), 1 / 4) : C.copy(t, n);
|
|
56856
56856
|
}, e.prototype.setFromToVector = function(t, r, n) {
|
|
56857
56857
|
this.value.isCoarseBackbone || this.helixOrientationCenters && Td(n) ? C.set(t, 1, 0, 0) : (this.atomicPos(HI, this.directionFromElementIndex[r]), this.atomicPos(qI, this.directionToElementIndex[r]), C.sub(t, qI, HI));
|
|
@@ -57351,7 +57351,7 @@ function Qft(e, t, r, n, i, a) {
|
|
|
57351
57351
|
for (var s = i.sizeFactor, u = 24 * o, c = gt.createState(u, u / 10, a), l = AJ(1), d = l.normalVectors, f = l.binormalVectors, h = 0, p = SJ(t, r); p.hasNext; ) {
|
|
57352
57352
|
var m = p.move();
|
|
57353
57353
|
c.currentGroup = h;
|
|
57354
|
-
var x = Xu(m.moleculeType), g =
|
|
57354
|
+
var x = Xu(m.moleculeType), g = zn.is(m.secStrucType, 4);
|
|
57355
57355
|
if (CJ(l, m, x || g ? 0.5 : 0.9, x ? 0.3 : 0.5), g && !m.secStrucLast || !g) {
|
|
57356
57356
|
var _ = n.size.size(m.center) * s, v = 4 * _, y = 4 * _, b = 6 * _, w = x ? f : d;
|
|
57357
57357
|
C.fromArray(gpe, w, 0), C.fromArray(ype, w, 3), C.normalize(Kz, C.add(Kz, gpe, ype)), ie.targetTo(vy, m.p3, m.p1, Kz), ie.mul(vy, vy, ie.rotY90Z180), ie.scale(vy, vy, C.set(Kft, b, y, v)), ie.setTranslation(vy, m.p2), gt.addPrimitive(c, vy, Zft);
|
|
@@ -57489,7 +57489,7 @@ function mht(e, t, r, n, i, a) {
|
|
|
57489
57489
|
for (var s = i.sizeFactor, u = i.detail, c = i.linearSegments, l = i.radialSegments, d = i.aspectRatio, f = i.arrowFactor, h = i.tubularHelices, p = i.helixProfile, m = i.nucleicProfile, x = c * l * o + (l + 1) * o * 2, g = gt.createState(x, x / 10, a), _ = Le.isCoarse(t), v = AJ(c), y = v.curvePoints, b = v.normalVectors, w = v.binormalVectors, S = v.widthValues, T = v.heightValues, P = 0, k = SJ(t, r, { ignoreSecondaryStructure: !1, useHelixOrientation: h }); k.hasNext; ) {
|
|
57490
57490
|
var $ = k.move();
|
|
57491
57491
|
g.currentGroup = P;
|
|
57492
|
-
var A = Xu($.moleculeType), M =
|
|
57492
|
+
var A = Xu($.moleculeType), M = zn.is($.secStrucType, 4), O = zn.is($.secStrucType, 2), D = A ? iF : nF;
|
|
57493
57493
|
CJ(v, $, O && !h ? 0.9 : 0.5, D);
|
|
57494
57494
|
var N = n.size.size($.centerPrev) * s, L = n.size.size($.center) * s, U = n.size.size($.centerNext) * s;
|
|
57495
57495
|
_ && (N *= d / 2, L *= d / 2, U *= d / 2);
|
|
@@ -59409,7 +59409,7 @@ var Upt = function(e) {
|
|
|
59409
59409
|
return this.runTask(this.state.data.transaction(t, r));
|
|
59410
59410
|
}, e.prototype.clear = function(t) {
|
|
59411
59411
|
var r;
|
|
59412
|
-
return t === void 0 && (t = !1), t && ((r = this.canvas3d) === null || r === void 0 || r.setProps(nJ)), Rr.State.RemoveObject(this, { state: this.state.data, ref:
|
|
59412
|
+
return t === void 0 && (t = !1), t && ((r = this.canvas3d) === null || r === void 0 || r.setProps(nJ)), Rr.State.RemoveObject(this, { state: this.state.data, ref: jn.RootRef });
|
|
59413
59413
|
}, e.prototype.dispose = function(t) {
|
|
59414
59414
|
var r, n;
|
|
59415
59415
|
if (!this.disposed) {
|
|
@@ -62144,7 +62144,7 @@ const vvt = [
|
|
|
62144
62144
|
protvistaFeatureId: r.model_identifier,
|
|
62145
62145
|
downloadLink: r.model_url,
|
|
62146
62146
|
sourceDBLink: r.model_page_url
|
|
62147
|
-
})), pme =
|
|
62147
|
+
})), pme = Un`
|
|
62148
62148
|
<strong>Model Confidence:</strong>
|
|
62149
62149
|
<ul class="no-bullet">
|
|
62150
62150
|
<li>
|
|
@@ -62171,7 +62171,7 @@ const vvt = [
|
|
|
62171
62171
|
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100.
|
|
62172
62172
|
Some regions with low pLDDT may be unstructured in isolation.
|
|
62173
62173
|
</p>
|
|
62174
|
-
`, wvt =
|
|
62174
|
+
`, wvt = Un`<strong>Model Pathogenicity:</strong>
|
|
62175
62175
|
<ul class="no-bullet">
|
|
62176
62176
|
<li>
|
|
62177
62177
|
<span class="af-legend" style="background-color: rgb(154, 19, 26)"></span>
|
|
@@ -62193,7 +62193,7 @@ const vvt = [
|
|
|
62193
62193
|
The displayed colour for each residue is the average AlphaMissense
|
|
62194
62194
|
pathogenicity score across all possible amino acid substitutions at that
|
|
62195
62195
|
position.
|
|
62196
|
-
</p>`, Svt = (e, t) =>
|
|
62196
|
+
</p>`, Svt = (e, t) => Un`<a
|
|
62197
62197
|
href="${yvt}?accession=${e}&source=${t}"
|
|
62198
62198
|
>Foldseek</a
|
|
62199
62199
|
>`, vG = "protvista-styles";
|
|
@@ -62217,7 +62217,7 @@ let fR = class extends hw {
|
|
|
62217
62217
|
this.loading = !1;
|
|
62218
62218
|
const i = bvt(n[e] || []);
|
|
62219
62219
|
let a = [];
|
|
62220
|
-
n[e].sequence?.value === n[t][0]?.sequence && (a = _vt(n[t] || []));
|
|
62220
|
+
n[e].sequence?.value === n[t]?.[0]?.sequence && (a = _vt(n[t] || []));
|
|
62221
62221
|
const o = xvt(n[r] || []), s = [...i, ...a, ...o];
|
|
62222
62222
|
!s || !s.length || (this.data = s, this.alphamissenseAvailable = n[t].some(
|
|
62223
62223
|
(u) => u.amAnnotationsUrl
|
|
@@ -62310,10 +62310,10 @@ let fR = class extends hw {
|
|
|
62310
62310
|
this.colorTheme = e.target.value, e.target.value === "alphafold" ? this.metaInfo = pme : this.metaInfo = wvt;
|
|
62311
62311
|
}
|
|
62312
62312
|
render() {
|
|
62313
|
-
return
|
|
62313
|
+
return Un`
|
|
62314
62314
|
<div class="protvista-uniprot-structure">
|
|
62315
62315
|
<div class="protvista-uniprot-structure__structure">
|
|
62316
|
-
${this.metaInfo ?
|
|
62316
|
+
${this.metaInfo ? Un` <div class="protvista-uniprot-structure__meta">
|
|
62317
62317
|
<div class="theme-selection">
|
|
62318
62318
|
Select color scale
|
|
62319
62319
|
<div>
|
|
@@ -62347,18 +62347,19 @@ let fR = class extends hw {
|
|
|
62347
62347
|
</div>
|
|
62348
62348
|
</div>
|
|
62349
62349
|
${this.metaInfo}
|
|
62350
|
-
</div>` :
|
|
62351
|
-
${this.structureId ?
|
|
62350
|
+
</div>` : Un``}
|
|
62351
|
+
${this.structureId ? Un`<nightingale-structure
|
|
62352
62352
|
structure-id=${this.structureId}
|
|
62353
62353
|
protein-accession=${this.accession}
|
|
62354
62354
|
color-theme=${this.colorTheme}
|
|
62355
|
-
></nightingale-structure>` :
|
|
62355
|
+
></nightingale-structure>` : Un``}
|
|
62356
|
+
${this.modelUrl ? Un`<nightingale-structure
|
|
62356
62357
|
model-url=${this.modelUrl}
|
|
62357
62358
|
color-theme=${this.colorTheme}
|
|
62358
|
-
></nightingale-structure>`}
|
|
62359
|
+
></nightingale-structure>` : Un``}
|
|
62359
62360
|
</div>
|
|
62360
62361
|
<div class="protvista-uniprot-structure__table">
|
|
62361
|
-
${this.data && this.data.length ?
|
|
62362
|
+
${this.data && this.data.length ? Un`<protvista-datatable noScrollToRow noDeselect filter-scroll>
|
|
62362
62363
|
<table>
|
|
62363
62364
|
<thead>
|
|
62364
62365
|
<tr>
|
|
@@ -62383,7 +62384,7 @@ let fR = class extends hw {
|
|
|
62383
62384
|
positions: a,
|
|
62384
62385
|
downloadLink: o,
|
|
62385
62386
|
sourceDBLink: s
|
|
62386
|
-
}) =>
|
|
62387
|
+
}) => Un`<tr
|
|
62387
62388
|
data-id="${t}"
|
|
62388
62389
|
@click="${() => this.onTableRowClick({ id: t, source: e, downloadLink: o })}"
|
|
62389
62390
|
>
|
|
@@ -62400,27 +62401,27 @@ let fR = class extends hw {
|
|
|
62400
62401
|
<td>${i || ""}</td>
|
|
62401
62402
|
<td>${a || ""}</td>
|
|
62402
62403
|
<td>
|
|
62403
|
-
${e === "PDB" ?
|
|
62404
|
-
${vvt.map((u) =>
|
|
62404
|
+
${e === "PDB" ? Un`
|
|
62405
|
+
${vvt.map((u) => Un`
|
|
62405
62406
|
<a href="${u.link}${t}"
|
|
62406
62407
|
>${u.name}</a
|
|
62407
62408
|
>
|
|
62408
62409
|
`).reduce(
|
|
62409
|
-
(u, c) =>
|
|
62410
|
+
(u, c) => Un` ${u} · ${c} `
|
|
62410
62411
|
)}
|
|
62411
62412
|
` : ""}
|
|
62412
|
-
${e === "AlphaFold" ?
|
|
62413
|
+
${e === "AlphaFold" ? Un`<a href="${gvt}${this.accession}"
|
|
62413
62414
|
>AlphaFold</a
|
|
62414
62415
|
>` : ""}
|
|
62415
|
-
${s ?
|
|
62416
|
+
${s ? Un`<a href="${s}">${e}</a>` : ""}
|
|
62416
62417
|
</td>
|
|
62417
62418
|
<td>
|
|
62418
|
-
${o ?
|
|
62419
|
+
${o ? Un`<a
|
|
62419
62420
|
href="${o}"
|
|
62420
62421
|
class="download-link"
|
|
62421
62422
|
>${cH`${fH(hvt)}`}</a
|
|
62422
62423
|
> ` : ""}
|
|
62423
|
-
${e === "PDB" || e === "AlphaFold" ?
|
|
62424
|
+
${e === "PDB" || e === "AlphaFold" ? Un`·
|
|
62424
62425
|
${Svt(
|
|
62425
62426
|
e === "PDB" ? t : this.accession,
|
|
62426
62427
|
e === "PDB" ? "PDB" : "AlphaFoldDB"
|
|
@@ -62430,13 +62431,13 @@ let fR = class extends hw {
|
|
|
62430
62431
|
)}
|
|
62431
62432
|
</tbody>
|
|
62432
62433
|
</table>
|
|
62433
|
-
</protvista-datatable>` :
|
|
62434
|
-
${this.loading ?
|
|
62434
|
+
</protvista-datatable>` : Un``}
|
|
62435
|
+
${this.loading ? Un`<div class="protvista-loader">
|
|
62435
62436
|
${cH`${fH(K$e)}`}
|
|
62436
|
-
</div>` :
|
|
62437
|
-
${!this.data && !this.loading ?
|
|
62437
|
+
</div>` : Un``}
|
|
62438
|
+
${!this.data && !this.loading ? Un`<div class="protvista-no-results">
|
|
62438
62439
|
No structure information available for ${this.accession}
|
|
62439
|
-
</div>` :
|
|
62440
|
+
</div>` : Un``}
|
|
62440
62441
|
</div>
|
|
62441
62442
|
</div>
|
|
62442
62443
|
`;
|
|
@@ -69660,11 +69661,11 @@ function WG(e) {
|
|
|
69660
69661
|
return i.constructor.createProperty(a, o ? { ...n, wrapped: !0 } : n), o ? Object.getOwnPropertyDescriptor(i, a) : void 0;
|
|
69661
69662
|
})(e, t, r);
|
|
69662
69663
|
}
|
|
69663
|
-
var $u, jc, Oi,
|
|
69664
|
+
var $u, jc, Oi, Hn, nh, hY, pY;
|
|
69664
69665
|
const K_t = 10;
|
|
69665
69666
|
let Z_t = class {
|
|
69666
69667
|
constructor() {
|
|
69667
|
-
$u.add(this), jc.set(this, 1), Oi.set(this, 1),
|
|
69668
|
+
$u.add(this), jc.set(this, 1), Oi.set(this, 1), Hn.set(this, 1);
|
|
69668
69669
|
}
|
|
69669
69670
|
shape2function(t) {
|
|
69670
69671
|
switch (t) {
|
|
@@ -69716,46 +69717,46 @@ let Z_t = class {
|
|
|
69716
69717
|
}
|
|
69717
69718
|
}
|
|
69718
69719
|
getFeatureShape(t, r, n, i) {
|
|
69719
|
-
return i = i || "rectangle", LE(this, jc, n), LE(this, Oi, r), LE(this,
|
|
69720
|
+
return i = i || "rectangle", LE(this, jc, n), LE(this, Oi, r), LE(this, Hn, t * n), this.shape2function(i)();
|
|
69720
69721
|
}
|
|
69721
69722
|
static isContinuous(t) {
|
|
69722
69723
|
return t.toLowerCase() !== "bridge";
|
|
69723
69724
|
}
|
|
69724
69725
|
rectangle() {
|
|
69725
|
-
return `M0,0L${Bt(this,
|
|
69726
|
+
return `M0,0L${Bt(this, Hn, "f")},0L${Bt(this, Hn, "f")},${Bt(this, Oi, "f")}L0,${Bt(this, Oi, "f")}Z`;
|
|
69726
69727
|
}
|
|
69727
69728
|
roundRectangle() {
|
|
69728
|
-
return `M6,0h${Bt(this,
|
|
69729
|
+
return `M6,0h${Bt(this, Hn, "f") - 12},0a6,6 0 0 1 6,6v${Bt(this, Oi, "f") - 12}a6,6 0 0 1 -6,6h${12 - Bt(this, Hn, "f")}a6,6 0 0 1 -6,-6v${12 - Bt(this, Oi, "f")}a6,6 0 0 1 6,-6Z`;
|
|
69729
69730
|
}
|
|
69730
69731
|
line() {
|
|
69731
|
-
return `M0,${Bt(this, Oi, "f") / 2} L${Bt(this,
|
|
69732
|
+
return `M0,${Bt(this, Oi, "f") / 2} L${Bt(this, Hn, "f")},${Bt(this, Oi, "f") / 2}`;
|
|
69732
69733
|
}
|
|
69733
69734
|
bridge() {
|
|
69734
|
-
return Bt(this, jc, "f") !== 1 ? `M0,${Bt(this, Oi, "f")}L0,0L${Bt(this,
|
|
69735
|
+
return Bt(this, jc, "f") !== 1 ? `M0,${Bt(this, Oi, "f")}L0,0L${Bt(this, Hn, "f")},0L${Bt(this, Hn, "f")},${Bt(this, Oi, "f")}L${Bt(this, Hn, "f")},2L0,2Z` : `M0,${Bt(this, Oi, "f")}L0,${Bt(this, Oi, "f") / 2}L${Bt(this, Hn, "f") / 2},${Bt(this, Oi, "f") / 2}L${Bt(this, Hn, "f") / 2},0L${Bt(this, Hn, "f") / 2},${Bt(this, Oi, "f") / 2}L${Bt(this, Hn, "f")},${Bt(this, Oi, "f") / 2}L${Bt(this, Hn, "f")},${Bt(this, Oi, "f")}Z`;
|
|
69735
69736
|
}
|
|
69736
69737
|
diamond() {
|
|
69737
|
-
const t = Bt(this,
|
|
69738
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${t},0L${t + 5},5L${t},10L${t - 5},5`;
|
|
69738
69739
|
return Bt(this, jc, "f") !== 1 ? r + Bt(this, $u, "m", nh).call(this, 5) : `${r}Z`;
|
|
69739
69740
|
}
|
|
69740
69741
|
chevron() {
|
|
69741
|
-
const t = Bt(this,
|
|
69742
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${t},5L${5 + t},0L${5 + t},5L${t},10L${-5 + t},5L${-5 + t},0`;
|
|
69742
69743
|
return Bt(this, jc, "f") !== 1 ? `${r}L${t},5${Bt(this, $u, "m", nh).call(this, 5)}Z` : r + "Z";
|
|
69743
69744
|
}
|
|
69744
69745
|
catFace() {
|
|
69745
|
-
const t = Bt(this,
|
|
69746
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${-5 + t},0L${-5 + t},6L${-2 + t},10L${2 + t},10L${5 + t},6L${5 + t},0L${2 + t},4L${-2 + t},4`;
|
|
69746
69747
|
return Bt(this, jc, "f") !== 1 ? `${r}M${t},0${Bt(this, $u, "m", nh).call(this, 5)}Z` : `${r}Z`;
|
|
69747
69748
|
}
|
|
69748
69749
|
triangle() {
|
|
69749
|
-
const t = Bt(this,
|
|
69750
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${t},0L${5 + t},10L${-5 + t},10`;
|
|
69750
69751
|
return Bt(this, jc, "f") !== 1 ? `${r}L${t},0${Bt(this, $u, "m", nh).call(this, 5)}Z` : `${r}Z`;
|
|
69751
69752
|
}
|
|
69752
69753
|
wave() {
|
|
69753
|
-
const t = Bt(this,
|
|
69754
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${-5 + t},5A2.5,5 0 1,1 ${t},5A2.5,5 0 1,0 ${5 + t},5`;
|
|
69754
69755
|
return Bt(this, jc, "f") !== 1 ? `${r + Bt(this, $u, "m", nh).call(this, 5)}Z` : `${r}Z`;
|
|
69755
69756
|
}
|
|
69756
69757
|
getPolygon(t) {
|
|
69757
69758
|
let r = "M ";
|
|
69758
|
-
const n = Bt(this,
|
|
69759
|
+
const n = Bt(this, Hn, "f") / 2;
|
|
69759
69760
|
for (let i = 0; i < t; i++) r += `${5 * Math.cos(2 * Math.PI * i / t) + n},${5 * Math.sin(2 * Math.PI * i / t) + 5} `;
|
|
69760
69761
|
return Bt(this, jc, "f") !== 1 ? `${r} ${5 * Math.cos(0) + n},${5 * Math.sin(0) + 5} ${Bt(this, $u, "m", nh).call(this, 5)}Z` : `${r}Z`;
|
|
69761
69762
|
}
|
|
@@ -69766,29 +69767,29 @@ let Z_t = class {
|
|
|
69766
69767
|
return this.getPolygon(5);
|
|
69767
69768
|
}
|
|
69768
69769
|
circle() {
|
|
69769
|
-
const t = Bt(this,
|
|
69770
|
+
const t = Bt(this, Hn, "f") / 2, r = Math.sqrt(K_t / Math.PI), n = `M${t},0A${r},${r} 0 1,1 ${t},10A${r},${r} 0 1,1 ${t},0`;
|
|
69770
69771
|
return Bt(this, jc, "f") !== 1 ? `${n + Bt(this, $u, "m", nh).call(this, 5)}Z` : `${n}Z`;
|
|
69771
69772
|
}
|
|
69772
69773
|
arrow() {
|
|
69773
|
-
const t = Bt(this,
|
|
69774
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${t},0L${-1 + t},0L${-5 + t},4L${-1 + t},${Bt(this, Oi, "f")}L${t},${Bt(this, Oi, "f")}L${4 + t},4`;
|
|
69774
69775
|
return Bt(this, jc, "f") !== 1 ? `${r}L${t},0${Bt(this, $u, "m", nh).call(this, 5)}Z` : `${r}Z`;
|
|
69775
69776
|
}
|
|
69776
69777
|
doubleBar() {
|
|
69777
|
-
const t = Bt(this,
|
|
69778
|
+
const t = Bt(this, Hn, "f") / 2, r = `M${t},0L${-5 + t},10L${t},10L${5 + t},0`;
|
|
69778
69779
|
return Bt(this, jc, "f") !== 1 ? `${r}L${t},0${Bt(this, $u, "m", nh).call(this, 5)}Z` : `${r}Z`;
|
|
69779
69780
|
}
|
|
69780
69781
|
discontinuousStart() {
|
|
69781
|
-
return `M0,0L${Bt(this,
|
|
69782
|
+
return `M0,0L${Bt(this, Hn, "f")},0L${Bt(this, Hn, "f")},${Bt(this, Oi, "f")}L0,${Bt(this, Oi, "f")}${Bt(this, $u, "m", pY).call(this)}Z`;
|
|
69782
69783
|
}
|
|
69783
69784
|
discontinuous() {
|
|
69784
|
-
return `M0,0L${Bt(this,
|
|
69785
|
+
return `M0,0L${Bt(this, Hn, "f")},0${Bt(this, $u, "m", hY).call(this)}L0,${Bt(this, Oi, "f")}${Bt(this, $u, "m", pY).call(this)}Z`;
|
|
69785
69786
|
}
|
|
69786
69787
|
discontinuousEnd() {
|
|
69787
|
-
return `M0,0L${Bt(this,
|
|
69788
|
+
return `M0,0L${Bt(this, Hn, "f")},0${Bt(this, $u, "m", hY).call(this)}L0,${Bt(this, Oi, "f")}Z`;
|
|
69788
69789
|
}
|
|
69789
69790
|
helix() {
|
|
69790
69791
|
let r = 2.5;
|
|
69791
|
-
const n = Math.round(Bt(this,
|
|
69792
|
+
const n = Math.round(Bt(this, Hn, "f") / 5);
|
|
69792
69793
|
let i = "";
|
|
69793
69794
|
for (let a = 0; a < n; a++)
|
|
69794
69795
|
i += `M${-2.5 + r},${Bt(this, Oi, "f")} C${r + 2.5},7.5 ${2.5 + r},2.5 ${r}, 0 C${r - 2.5},2.5 ${r},7.5 ${2.5 + r},${Bt(this, Oi, "f")}`, r += 5;
|
|
@@ -69796,21 +69797,21 @@ let Z_t = class {
|
|
|
69796
69797
|
}
|
|
69797
69798
|
strand() {
|
|
69798
69799
|
let t = 0;
|
|
69799
|
-
Bt(this,
|
|
69800
|
+
Bt(this, Hn, "f") > 5 && (t = Bt(this, Hn, "f") - 5);
|
|
69800
69801
|
const r = Bt(this, Oi, "f") / 4;
|
|
69801
|
-
return `M0,${r}L${t},${r}L${t},${3 * r}L0,${3 * r}L0,${r}M${t},0L${Bt(this,
|
|
69802
|
+
return `M0,${r}L${t},${r}L${t},${3 * r}L0,${3 * r}L0,${r}M${t},0L${Bt(this, Hn, "f")},${2 * r}L${t},${Bt(this, Oi, "f")}Z`;
|
|
69802
69803
|
}
|
|
69803
69804
|
tag(t = {}) {
|
|
69804
|
-
const r = Bt(this, Oi, "f"), n = Bt(this,
|
|
69805
|
+
const r = Bt(this, Oi, "f"), n = Bt(this, Hn, "f"), i = r / Math.sqrt(2);
|
|
69805
69806
|
let a = "M0," + r / 2;
|
|
69806
69807
|
return t.left ? a += ` L${i},0` : a += " L0,0", t.right ? a += ` L${n - i},0` : a += ` L${n},0`, t.right ? a += ` L${n},${r / 2} L${n - i},${r}` : a += ` L${n},${r}`, t.left ? a += ` L${i},${r}` : a += ` L0,${r}`, a + " Z";
|
|
69807
69808
|
}
|
|
69808
69809
|
};
|
|
69809
|
-
jc = /* @__PURE__ */ new WeakMap(), Oi = /* @__PURE__ */ new WeakMap(),
|
|
69810
|
-
return `M0,${e}L${Bt(this,
|
|
69810
|
+
jc = /* @__PURE__ */ new WeakMap(), Oi = /* @__PURE__ */ new WeakMap(), Hn = /* @__PURE__ */ new WeakMap(), $u = /* @__PURE__ */ new WeakSet(), nh = function(e) {
|
|
69811
|
+
return `M0,${e}L${Bt(this, Hn, "f")},${e}Z`;
|
|
69811
69812
|
}, hY = function() {
|
|
69812
69813
|
const e = Bt(this, Oi, "f") / 4;
|
|
69813
|
-
return `L${Bt(this,
|
|
69814
|
+
return `L${Bt(this, Hn, "f") - e},${e}L${Bt(this, Hn, "f")},${2 * e}L${Bt(this, Hn, "f") - e},${3 * e}L${Bt(this, Hn, "f")},${Bt(this, Oi, "f")}`;
|
|
69814
69815
|
}, pY = function() {
|
|
69815
69816
|
const e = Bt(this, Oi, "f") / 4;
|
|
69816
69817
|
return `L${e},${3 * e}L0,${2 * e}L${e},${e}`;
|
|
@@ -83281,7 +83282,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
83281
83282
|
while (R);
|
|
83282
83283
|
return z;
|
|
83283
83284
|
}
|
|
83284
|
-
function
|
|
83285
|
+
function Vn(E, R) {
|
|
83285
83286
|
return OL(jre(E, R, ec), E + "");
|
|
83286
83287
|
}
|
|
83287
83288
|
function lRe(E) {
|
|
@@ -83421,7 +83422,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
83421
83422
|
function Mv(E, R) {
|
|
83422
83423
|
return Sn(E) ? E : kL(E, R) ? [E] : qre(Li(E));
|
|
83423
83424
|
}
|
|
83424
|
-
var mRe =
|
|
83425
|
+
var mRe = Vn;
|
|
83425
83426
|
function $v(E, R, z) {
|
|
83426
83427
|
var Y = E.length;
|
|
83427
83428
|
return z = z === e ? Y : z, !R && z >= Y ? E : El(E, R, z);
|
|
@@ -83483,7 +83484,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
83483
83484
|
};
|
|
83484
83485
|
}
|
|
83485
83486
|
function J2(E) {
|
|
83486
|
-
return
|
|
83487
|
+
return Vn(function(R, z) {
|
|
83487
83488
|
var Y = -1, te = z.length, de = te > 1 ? z[te - 1] : e, Me = te > 2 ? z[2] : e;
|
|
83488
83489
|
for (de = E.length > 3 && typeof de == "function" ? (te--, de) : e, Me && Su(z[0], z[1], Me) && (de = te < 3 ? e : de, te = 1), R = Xt(R); ++Y < te; ) {
|
|
83489
83490
|
var Re = z[Y];
|
|
@@ -83622,7 +83623,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
83622
83623
|
}
|
|
83623
83624
|
function AL(E) {
|
|
83624
83625
|
return Sp(function(R) {
|
|
83625
|
-
return R = ca(R, _u(qr())),
|
|
83626
|
+
return R = ca(R, _u(qr())), Vn(function(z) {
|
|
83626
83627
|
var Y = this;
|
|
83627
83628
|
return E(R, function(te) {
|
|
83628
83629
|
return Cs(te, Y, z);
|
|
@@ -83963,12 +83964,12 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
83963
83964
|
var R = new Tl(E.__wrapped__, E.__chain__);
|
|
83964
83965
|
return R.__actions__ = Zu(E.__actions__), R.__index__ = E.__index__, R.__values__ = E.__values__, R;
|
|
83965
83966
|
}
|
|
83966
|
-
var _Re =
|
|
83967
|
+
var _Re = Vn(function(E, R) {
|
|
83967
83968
|
return ao(E) ? H3(E, Ts(R, 1, ao, !0)) : [];
|
|
83968
|
-
}), xRe =
|
|
83969
|
+
}), xRe = Vn(function(E, R) {
|
|
83969
83970
|
var z = Ml(R);
|
|
83970
83971
|
return ao(z) && (z = e), ao(E) ? H3(E, Ts(R, 1, ao, !0), qr(z, 2)) : [];
|
|
83971
|
-
}), wRe =
|
|
83972
|
+
}), wRe = Vn(function(E, R) {
|
|
83972
83973
|
var z = Ml(R);
|
|
83973
83974
|
return ao(z) && (z = e), ao(E) ? H3(E, Ts(R, 1, ao, !0), e, z) : [];
|
|
83974
83975
|
});
|
|
@@ -83990,13 +83991,13 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
83990
83991
|
function Zre(E) {
|
|
83991
83992
|
return E && E.length ? E[0] : e;
|
|
83992
83993
|
}
|
|
83993
|
-
var SRe =
|
|
83994
|
+
var SRe = Vn(function(E) {
|
|
83994
83995
|
var R = ca(E, xL);
|
|
83995
83996
|
return R.length && R[0] === E[0] ? dL(R) : [];
|
|
83996
|
-
}), ARe =
|
|
83997
|
+
}), ARe = Vn(function(E) {
|
|
83997
83998
|
var R = Ml(E), z = ca(E, xL);
|
|
83998
83999
|
return R === Ml(z) ? R = e : z.pop(), z.length && z[0] === E[0] ? dL(z, qr(R, 2)) : [];
|
|
83999
|
-
}), CRe =
|
|
84000
|
+
}), CRe = Vn(function(E) {
|
|
84000
84001
|
var R = Ml(E), z = ca(E, xL);
|
|
84001
84002
|
return (R = typeof R == "function" ? R : e) && z.pop(), z.length && z[0] === E[0] ? dL(z, e, R) : [];
|
|
84002
84003
|
});
|
|
@@ -84004,7 +84005,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84004
84005
|
var R = E == null ? 0 : E.length;
|
|
84005
84006
|
return R ? E[R - 1] : e;
|
|
84006
84007
|
}
|
|
84007
|
-
var TRe =
|
|
84008
|
+
var TRe = Vn(Qre);
|
|
84008
84009
|
function Qre(E, R) {
|
|
84009
84010
|
return E && E.length && R && R.length ? mL(E, R) : E;
|
|
84010
84011
|
}
|
|
@@ -84017,12 +84018,12 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84017
84018
|
function RL(E) {
|
|
84018
84019
|
return E == null ? E : Z9e.call(E);
|
|
84019
84020
|
}
|
|
84020
|
-
var ERe =
|
|
84021
|
+
var ERe = Vn(function(E) {
|
|
84021
84022
|
return Ev(Ts(E, 1, ao, !0));
|
|
84022
|
-
}), MRe =
|
|
84023
|
+
}), MRe = Vn(function(E) {
|
|
84023
84024
|
var R = Ml(E);
|
|
84024
84025
|
return ao(R) && (R = e), Ev(Ts(E, 1, ao, !0), qr(R, 2));
|
|
84025
|
-
}), $Re =
|
|
84026
|
+
}), $Re = Vn(function(E) {
|
|
84026
84027
|
var R = Ml(E);
|
|
84027
84028
|
return R = typeof R == "function" ? R : e, Ev(Ts(E, 1, ao, !0), e, R);
|
|
84028
84029
|
});
|
|
@@ -84042,17 +84043,17 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84042
84043
|
return Cs(R, e, Y);
|
|
84043
84044
|
});
|
|
84044
84045
|
}
|
|
84045
|
-
var kRe =
|
|
84046
|
+
var kRe = Vn(function(E, R) {
|
|
84046
84047
|
return ao(E) ? H3(E, R) : [];
|
|
84047
|
-
}), IRe =
|
|
84048
|
+
}), IRe = Vn(function(E) {
|
|
84048
84049
|
return _L(Lf(E, ao));
|
|
84049
|
-
}), DRe =
|
|
84050
|
+
}), DRe = Vn(function(E) {
|
|
84050
84051
|
var R = Ml(E);
|
|
84051
84052
|
return ao(R) && (R = e), _L(Lf(E, ao), qr(R, 2));
|
|
84052
|
-
}), ORe =
|
|
84053
|
+
}), ORe = Vn(function(E) {
|
|
84053
84054
|
var R = Ml(E);
|
|
84054
84055
|
return R = typeof R == "function" ? R : e, _L(Lf(E, ao), e, R);
|
|
84055
|
-
}), RRe =
|
|
84056
|
+
}), RRe = Vn(BL), BRe = Vn(function(E) {
|
|
84056
84057
|
var R = E.length, z = R > 1 ? E[R - 1] : e;
|
|
84057
84058
|
return z = typeof z == "function" ? (E.pop(), z) : e, Jre(E, z);
|
|
84058
84059
|
});
|
|
@@ -84081,7 +84082,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84081
84082
|
}
|
|
84082
84083
|
var jRe = lk(function(E, R, z) {
|
|
84083
84084
|
yn.call(E, z) ? E[z].push(R) : xp(E, z, [R]);
|
|
84084
|
-
}), zRe =
|
|
84085
|
+
}), zRe = Vn(function(E, R, z) {
|
|
84085
84086
|
var Y = -1, te = typeof R == "function", de = Qu(E) ? ge(E.length) : [];
|
|
84086
84087
|
return Pv(E, function(Me) {
|
|
84087
84088
|
de[++Y] = te ? Cs(R, Me, z) : q3(Me, R, z);
|
|
@@ -84096,7 +84097,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84096
84097
|
E[z ? 0 : 1].push(R);
|
|
84097
84098
|
}, function() {
|
|
84098
84099
|
return [[], []];
|
|
84099
|
-
}), HRe =
|
|
84100
|
+
}), HRe = Vn(function(E, R) {
|
|
84100
84101
|
if (E == null) return [];
|
|
84101
84102
|
var z = R.length;
|
|
84102
84103
|
return z > 1 && Su(E, R[0], R[1]) ? R = [] : z > 2 && Su(R[0], R[1], R[2]) && (R = [R[0]]), cre(E, Ts(R, 1), []);
|
|
@@ -84113,14 +84114,14 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84113
84114
|
return --E > 0 && (z = R.apply(this, arguments)), E <= 1 && (R = e), z;
|
|
84114
84115
|
};
|
|
84115
84116
|
}
|
|
84116
|
-
var NL =
|
|
84117
|
+
var NL = Vn(function(E, R, z) {
|
|
84117
84118
|
var Y = 1;
|
|
84118
84119
|
if (z.length) {
|
|
84119
84120
|
var te = jf(z, t_(NL));
|
|
84120
84121
|
Y |= a;
|
|
84121
84122
|
}
|
|
84122
84123
|
return wp(E, Y, R, z, te);
|
|
84123
|
-
}), ane =
|
|
84124
|
+
}), ane = Vn(function(E, R, z) {
|
|
84124
84125
|
var Y = 3;
|
|
84125
84126
|
if (z.length) {
|
|
84126
84127
|
var te = jf(z, t_(ane));
|
|
@@ -84166,9 +84167,9 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84166
84167
|
return Re === e ? Me : qt(_k());
|
|
84167
84168
|
}, Yr;
|
|
84168
84169
|
}
|
|
84169
|
-
var qRe =
|
|
84170
|
+
var qRe = Vn(function(E, R) {
|
|
84170
84171
|
return Zte(E, 1, R);
|
|
84171
|
-
}), WRe =
|
|
84172
|
+
}), WRe = Vn(function(E, R, z) {
|
|
84172
84173
|
return Zte(E, $l(R) || 0, z);
|
|
84173
84174
|
});
|
|
84174
84175
|
function xk(E, R) {
|
|
@@ -84201,14 +84202,14 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84201
84202
|
xk.Cache = _p;
|
|
84202
84203
|
var XRe = mRe(function(E, R) {
|
|
84203
84204
|
var z = (R = R.length == 1 && Sn(R[0]) ? ca(R[0], _u(qr())) : ca(Ts(R, 1), _u(qr()))).length;
|
|
84204
|
-
return
|
|
84205
|
+
return Vn(function(Y) {
|
|
84205
84206
|
for (var te = -1, de = Fs(Y.length, z); ++te < de; ) Y[te] = R[te].call(this, Y[te]);
|
|
84206
84207
|
return Cs(E, this, Y);
|
|
84207
84208
|
});
|
|
84208
|
-
}), FL =
|
|
84209
|
+
}), FL = Vn(function(E, R) {
|
|
84209
84210
|
var z = jf(R, t_(FL));
|
|
84210
84211
|
return wp(E, a, e, R, z);
|
|
84211
|
-
}), sne =
|
|
84212
|
+
}), sne = Vn(function(E, R) {
|
|
84212
84213
|
var z = jf(R, t_(sne));
|
|
84213
84214
|
return wp(E, o, e, R, z);
|
|
84214
84215
|
}), YRe = Sp(function(E, R) {
|
|
@@ -84334,7 +84335,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84334
84335
|
Vf(R, Ju(R), E, Y);
|
|
84335
84336
|
}), nBe = J2(function(E, R, z, Y) {
|
|
84336
84337
|
Vf(R, Wo(R), E, Y);
|
|
84337
|
-
}), iBe = Sp(sL), aBe =
|
|
84338
|
+
}), iBe = Sp(sL), aBe = Vn(function(E, R) {
|
|
84338
84339
|
E = Xt(E);
|
|
84339
84340
|
var z = -1, Y = R.length, te = Y > 2 ? R[2] : e;
|
|
84340
84341
|
for (te && Su(R[0], R[1], te) && (Y = 1); ++z < Y; ) for (var de = R[z], Me = Ju(de), Re = -1, tt = Me.length; ++Re < tt; ) {
|
|
@@ -84342,7 +84343,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84342
84343
|
(xt === e || wd(xt, ki[St]) && !yn.call(E, St)) && (E[St] = de[St]);
|
|
84343
84344
|
}
|
|
84344
84345
|
return E;
|
|
84345
|
-
}), oBe =
|
|
84346
|
+
}), oBe = Vn(function(E) {
|
|
84346
84347
|
return E.push(e, Ore), Cs(vne, e, E);
|
|
84347
84348
|
});
|
|
84348
84349
|
function jL(E, R, z) {
|
|
@@ -84356,7 +84357,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84356
84357
|
R != null && typeof R.toString != "function" && (R = Ic.call(R)), E[R] = z;
|
|
84357
84358
|
}, VL(ec)), uBe = Mre(function(E, R, z) {
|
|
84358
84359
|
R != null && typeof R.toString != "function" && (R = Ic.call(R)), yn.call(E, R) ? E[R].push(z) : E[R] = [z];
|
|
84359
|
-
}, qr), cBe =
|
|
84360
|
+
}, qr), cBe = Vn(q3);
|
|
84360
84361
|
function Wo(E) {
|
|
84361
84362
|
return Qu(E) ? Wte(E) : hL(E);
|
|
84362
84363
|
}
|
|
@@ -84425,7 +84426,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84425
84426
|
return Y.match(Et) || [];
|
|
84426
84427
|
}(E) : E.match(R) || [];
|
|
84427
84428
|
}
|
|
84428
|
-
var Sne =
|
|
84429
|
+
var Sne = Vn(function(E, R) {
|
|
84429
84430
|
try {
|
|
84430
84431
|
return Cs(E, e, R);
|
|
84431
84432
|
} catch (z) {
|
|
@@ -84448,11 +84449,11 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84448
84449
|
function HL(E) {
|
|
84449
84450
|
return ire(typeof E == "function" ? E : Pl(E, 1));
|
|
84450
84451
|
}
|
|
84451
|
-
var SBe =
|
|
84452
|
+
var SBe = Vn(function(E, R) {
|
|
84452
84453
|
return function(z) {
|
|
84453
84454
|
return q3(z, E, R);
|
|
84454
84455
|
};
|
|
84455
|
-
}), ABe =
|
|
84456
|
+
}), ABe = Vn(function(E, R) {
|
|
84456
84457
|
return function(z) {
|
|
84457
84458
|
return q3(E, z, R);
|
|
84458
84459
|
};
|
|
@@ -84530,7 +84531,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84530
84531
|
return E = R ? ca(E, function(Y) {
|
|
84531
84532
|
if (typeof Y[1] != "function") throw new Hr(t);
|
|
84532
84533
|
return [z(Y[0]), Y[1]];
|
|
84533
|
-
}) : [],
|
|
84534
|
+
}) : [], Vn(function(Y) {
|
|
84534
84535
|
for (var te = -1; ++te < R; ) {
|
|
84535
84536
|
var de = E[te];
|
|
84536
84537
|
if (Cs(de[0], this, Y)) return Cs(de[1], this, Y);
|
|
@@ -84610,7 +84611,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84610
84611
|
}, le.matchesProperty = function(E, R) {
|
|
84611
84612
|
return sre(E, Pl(R, 1));
|
|
84612
84613
|
}, le.memoize = xk, le.merge = lBe, le.mergeWith = vne, le.method = SBe, le.methodOf = ABe, le.mixin = qL, le.negate = wk, le.nthArg = function(E) {
|
|
84613
|
-
return E = Rn(E),
|
|
84614
|
+
return E = Rn(E), Vn(function(R) {
|
|
84614
84615
|
return ure(R, E);
|
|
84615
84616
|
});
|
|
84616
84617
|
}, le.omit = dBe, le.omitBy = function(E, R) {
|
|
@@ -84640,7 +84641,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84640
84641
|
return dre(E, te), z;
|
|
84641
84642
|
}, le.rest = function(E, R) {
|
|
84642
84643
|
if (typeof E != "function") throw new Hr(t);
|
|
84643
|
-
return
|
|
84644
|
+
return Vn(E, R = R === e ? R : Rn(R));
|
|
84644
84645
|
}, le.reverse = RL, le.sampleSize = function(E, R, z) {
|
|
84645
84646
|
return R = (z ? Su(E, R, z) : R === e) ? 1 : Rn(R), (Sn(E) ? nRe : dRe)(E, R);
|
|
84646
84647
|
}, le.set = function(E, R, z) {
|
|
@@ -84660,7 +84661,7 @@ f7 = DK, h7 = DK.exports, function() {
|
|
|
84660
84661
|
return z && typeof z != "number" && Su(E, R, z) && (R = z = e), (z = z === e ? f : z >>> 0) ? (E = Li(E)) && (typeof R == "string" || R != null && !UL(R)) && !(R = Dc(R)) && Tv(E) ? $v(Ie(E), 0, z) : E.split(R, z) : [];
|
|
84661
84662
|
}, le.spread = function(E, R) {
|
|
84662
84663
|
if (typeof E != "function") throw new Hr(t);
|
|
84663
|
-
return R = R == null ? 0 : Oo(Rn(R), 0),
|
|
84664
|
+
return R = R == null ? 0 : Oo(Rn(R), 0), Vn(function(z) {
|
|
84664
84665
|
var Y = z[R], te = $v(z, 0, R);
|
|
84665
84666
|
return Y && Uf(te, Y), Cs(E, this, te);
|
|
84666
84667
|
});
|
|
@@ -85047,7 +85048,7 @@ function print() { __p += __j.call(arguments, '') }
|
|
|
85047
85048
|
return this.filter(E).head();
|
|
85048
85049
|
}, ti.prototype.findLast = function(E) {
|
|
85049
85050
|
return this.reverse().find(E);
|
|
85050
|
-
}, ti.prototype.invokeMap =
|
|
85051
|
+
}, ti.prototype.invokeMap = Vn(function(E, R) {
|
|
85051
85052
|
return typeof E == "function" ? new ti(this) : this.map(function(z) {
|
|
85052
85053
|
return q3(z, E, R);
|
|
85053
85054
|
});
|
|
@@ -95748,9 +95749,9 @@ let CAe = class extends hw {
|
|
|
95748
95749
|
return this;
|
|
95749
95750
|
}
|
|
95750
95751
|
render() {
|
|
95751
|
-
return !this.sequence || !this.config || this.suspend ?
|
|
95752
|
+
return !this.sequence || !this.config || this.suspend ? Un`` : this.loading ? Un`<div class="protvista-loader">
|
|
95752
95753
|
${cH`${fH(K$e)}`}
|
|
95753
|
-
</div>` : this.hasData ?
|
|
95754
|
+
</div>` : this.hasData ? Un`
|
|
95754
95755
|
<nightingale-manager
|
|
95755
95756
|
reflected-attributes="length display-start display-end highlight activefilters filters"
|
|
95756
95757
|
>
|
|
@@ -95773,7 +95774,7 @@ let CAe = class extends hw {
|
|
|
95773
95774
|
</div>
|
|
95774
95775
|
</div>
|
|
95775
95776
|
${this.config.categories.map(
|
|
95776
|
-
(e) => this.data[e.name] &&
|
|
95777
|
+
(e) => this.data[e.name] && Un`
|
|
95777
95778
|
<div class="category" id="category_${e.name}">
|
|
95778
95779
|
<div
|
|
95779
95780
|
class="category-label"
|
|
@@ -95803,12 +95804,12 @@ let CAe = class extends hw {
|
|
|
95803
95804
|
${e.tracks && e.tracks.map((t) => {
|
|
95804
95805
|
if (this.openCategories.includes(e.name)) {
|
|
95805
95806
|
const r = this.data[`${e.name}-${t.name}`];
|
|
95806
|
-
return r && (Array.isArray(r) && r.length || Object.keys(r).length) ?
|
|
95807
|
+
return r && (Array.isArray(r) && r.length || Object.keys(r).length) ? Un`
|
|
95807
95808
|
<div class="category__track" id="track_${t.name}">
|
|
95808
95809
|
<div class="track-label" title="${t.tooltip}">
|
|
95809
95810
|
${t.filterComponent && this.getFilterComponent(
|
|
95810
95811
|
`${e.name}-${t.name}`
|
|
95811
|
-
) || t.labelUrl && this.accession &&
|
|
95812
|
+
) || t.labelUrl && this.accession && Un`<a
|
|
95812
95813
|
target="_blank"
|
|
95813
95814
|
href="${t.labelUrl.replace(
|
|
95814
95815
|
"{accession}",
|
|
@@ -95839,7 +95840,7 @@ let CAe = class extends hw {
|
|
|
95839
95840
|
${e.tracks ? "" : this.data[e.name].map(
|
|
95840
95841
|
(t) => {
|
|
95841
95842
|
if (this.openCategories.includes(e.name))
|
|
95842
|
-
return !t || !t.accession ? "" :
|
|
95843
|
+
return !t || !t.accession ? "" : Un`
|
|
95843
95844
|
<div
|
|
95844
95845
|
class="category__track"
|
|
95845
95846
|
id="track_${t.accession}"
|
|
@@ -95881,13 +95882,13 @@ let CAe = class extends hw {
|
|
|
95881
95882
|
></nightingale-sequence>
|
|
95882
95883
|
</div>
|
|
95883
95884
|
</div>
|
|
95884
|
-
${this.nostructure ? "" :
|
|
95885
|
+
${this.nostructure ? "" : Un`
|
|
95885
95886
|
<protvista-uniprot-structure
|
|
95886
95887
|
accession="${this.accession || ""}"
|
|
95887
95888
|
></protvista-uniprot-structure>
|
|
95888
95889
|
`}
|
|
95889
95890
|
</nightingale-manager>
|
|
95890
|
-
` :
|
|
95891
|
+
` : Un`<div class="protvista-no-results">
|
|
95891
95892
|
No feature data available for ${this.accession}
|
|
95892
95893
|
</div>`;
|
|
95893
95894
|
}
|
|
@@ -95931,7 +95932,7 @@ let CAe = class extends hw {
|
|
|
95931
95932
|
return e.map((t) => t.filter).join(",");
|
|
95932
95933
|
}
|
|
95933
95934
|
getFilterComponent(e) {
|
|
95934
|
-
return
|
|
95935
|
+
return Un`
|
|
95935
95936
|
<nightingale-filter
|
|
95936
95937
|
style="minWidth: 20%"
|
|
95937
95938
|
for="track-${e}"
|
|
@@ -95942,7 +95943,7 @@ let CAe = class extends hw {
|
|
|
95942
95943
|
getTrack(e, t = "", r = "", n = "", i = "", a = "", o = "") {
|
|
95943
95944
|
switch (e) {
|
|
95944
95945
|
case "nightingale-track-canvas":
|
|
95945
|
-
return
|
|
95946
|
+
return Un`
|
|
95946
95947
|
<nightingale-track-canvas
|
|
95947
95948
|
length="${this.sequence?.length}"
|
|
95948
95949
|
height="40"
|
|
@@ -95958,7 +95959,7 @@ let CAe = class extends hw {
|
|
|
95958
95959
|
</nightingale-track-canvas>
|
|
95959
95960
|
`;
|
|
95960
95961
|
case "nightingale-interpro-track":
|
|
95961
|
-
return
|
|
95962
|
+
return Un`
|
|
95962
95963
|
<nightingale-interpro-track
|
|
95963
95964
|
length="${this.sequence?.length}"
|
|
95964
95965
|
height="40"
|
|
@@ -95973,7 +95974,7 @@ let CAe = class extends hw {
|
|
|
95973
95974
|
</nightingale-interpro-track>
|
|
95974
95975
|
`;
|
|
95975
95976
|
case "nightingale-variation":
|
|
95976
|
-
return
|
|
95977
|
+
return Un`
|
|
95977
95978
|
<nightingale-variation
|
|
95978
95979
|
length="${this.sequence?.length}"
|
|
95979
95980
|
height="500"
|
|
@@ -95986,7 +95987,7 @@ let CAe = class extends hw {
|
|
|
95986
95987
|
</nightingale-variation>
|
|
95987
95988
|
`;
|
|
95988
95989
|
case "nightingale-linegraph-track":
|
|
95989
|
-
return
|
|
95990
|
+
return Un`
|
|
95990
95991
|
<nightingale-linegraph-track
|
|
95991
95992
|
length="${this.sequence?.length}"
|
|
95992
95993
|
height="50"
|
|
@@ -96000,7 +96001,7 @@ let CAe = class extends hw {
|
|
|
96000
96001
|
</nightingale-linegraph-track>
|
|
96001
96002
|
`;
|
|
96002
96003
|
case "nightingale-colored-sequence":
|
|
96003
|
-
return
|
|
96004
|
+
return Un`
|
|
96004
96005
|
<nightingale-colored-sequence
|
|
96005
96006
|
length="${this.sequence?.length}"
|
|
96006
96007
|
display-start="${this.displayCoordinates?.start}"
|
|
@@ -96015,7 +96016,7 @@ let CAe = class extends hw {
|
|
|
96015
96016
|
</nightingale-colored-sequence>
|
|
96016
96017
|
`;
|
|
96017
96018
|
case "nightingale-sequence-heatmap":
|
|
96018
|
-
return
|
|
96019
|
+
return Un`
|
|
96019
96020
|
<nightingale-sequence-heatmap
|
|
96020
96021
|
id="track-${i}"
|
|
96021
96022
|
heatmap-id="seq-heatmap"
|