protvista-uniprot 4.2.0 → 4.3.0

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Files changed (32) hide show
  1. package/README.md +8 -2
  2. package/dist/protvista-uniprot.mjs +41399 -28456
  3. package/dist/protvista-uniprot.mjs.map +1 -1
  4. package/dist/types/adapters/types/interpro.d.ts +1 -1
  5. package/dist/types/config.d.ts +1 -1
  6. package/dist/types/index.d.ts +3 -3
  7. package/dist/types/tooltips/interpro-tooltip.d.ts +3 -0
  8. package/dist/types/tooltips/{ptmTooltip.d.ts → ptm-tooltip.d.ts} +1 -1
  9. package/package.json +4 -4
  10. package/src/adapters/feature-adapter.ts +1 -1
  11. package/src/adapters/interpro-adapter.ts +21 -42
  12. package/src/adapters/proteomics-adapter.ts +6 -3
  13. package/src/adapters/ptm-exchange-adapter.ts +7 -2
  14. package/src/adapters/rna-editing-adapter.ts +1 -1
  15. package/src/adapters/structure-adapter.ts +1 -1
  16. package/src/adapters/types/interpro.ts +1 -1
  17. package/src/adapters/variation-adapter.ts +1 -1
  18. package/src/config.ts +60 -60
  19. package/src/index.ts +3 -3
  20. package/src/protvista-uniprot.ts +8 -8
  21. package/src/styles/protvista-styles.ts +1 -1
  22. package/src/tooltips/{featureTooltip.ts → feature-tooltip.ts} +8 -12
  23. package/src/tooltips/interpro-tooltip.ts +43 -0
  24. package/src/tooltips/{ptmTooltip.ts → ptm-tooltip.ts} +6 -1
  25. package/src/tooltips/{variationTooltip.ts → variation-tooltip.ts} +1 -1
  26. package/src/.vscode/settings.json +0 -3
  27. /package/dist/types/tooltips/{featureTooltip.d.ts → feature-tooltip.d.ts} +0 -0
  28. /package/dist/types/tooltips/{rnaEditingTooltip.d.ts → rna-editing-tooltip.d.ts} +0 -0
  29. /package/dist/types/tooltips/{structureTooltip.d.ts → structure-tooltip.d.ts} +0 -0
  30. /package/dist/types/tooltips/{variationTooltip.d.ts → variation-tooltip.d.ts} +0 -0
  31. /package/src/tooltips/{rnaEditingTooltip.ts → rna-editing-tooltip.ts} +0 -0
  32. /package/src/tooltips/{structureTooltip.ts → structure-tooltip.ts} +0 -0
package/src/tooltips/{ptmTooltip.ts → ptm-tooltip.ts} RENAMED
@@ -33,7 +33,7 @@ export const sumoylate = (aa: string) => {
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  return '';
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  };
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- const formatTooltip = (ptms: PTM[], aa: string, confidenceScore: string): string => {
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+ const formatTooltip = (title: string, ptms: PTM[], aa: string, confidenceScore: string): string => {
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  const evidences = [
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  ...ptms.flatMap(({ dbReferences }) =>
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  dbReferences?.flatMap(({ id }) => [id])
@@ -55,6 +55,11 @@ const formatTooltip = (ptms: PTM[], aa: string, confidenceScore: string): string
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  }
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  return `
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+ ${
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+ title
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+ ? `<h4>${title}</h4><hr />`
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+ : ''
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+ }
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  <h5>Description</h5><p>${
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  modification === 'Phosphorylation' ? phosphorylate(aa) : sumoylate(aa)
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  }</p>
package/src/tooltips/{variationTooltip.ts → variation-tooltip.ts} RENAMED
@@ -7,7 +7,7 @@ import {
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  } from '@nightingale-elements/nightingale-variation';
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  import groupBy from 'lodash-es/groupBy';
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- import { formatXrefs, getEvidenceFromCodes } from './featureTooltip';
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+ import { formatXrefs, getEvidenceFromCodes } from './feature-tooltip';
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  const getDiseaseAssociations = (associations: Association[]): string =>
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  associations
package/src/.vscode/settings.json DELETED
@@ -1,3 +0,0 @@
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- {
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- "window.title": "${rootPath}${separator}[new-ptm-builds]"
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- }