protvista-uniprot 2.9.0 → 2.9.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. package/dist/es/config.json +671 -0
  2. package/dist/es/download-panel.d.ts +29 -0
  3. package/dist/es/download-panel.js +137 -0
  4. package/dist/es/download-panel.js.map +1 -0
  5. package/dist/es/filterConfig.d.ts +19 -0
  6. package/dist/es/filterConfig.js +141 -0
  7. package/dist/es/filterConfig.js.map +1 -0
  8. package/dist/es/icons/download.svg +4 -0
  9. package/dist/es/icons/spinner.svg +17 -0
  10. package/dist/es/index.d.ts +14 -0
  11. package/dist/es/index.js +21 -0
  12. package/dist/es/index.js.map +1 -0
  13. package/dist/es/loadComponents.d.ts +2 -0
  14. package/dist/es/loadComponents.js +7 -0
  15. package/dist/es/loadComponents.js.map +1 -0
  16. package/dist/es/protvista-uniprot-structure.d.ts +48 -0
  17. package/dist/es/protvista-uniprot-structure.js +298 -0
  18. package/dist/es/protvista-uniprot-structure.js.map +1 -0
  19. package/dist/es/protvista-uniprot.d.ts +115 -0
  20. package/dist/es/protvista-uniprot.js +524 -0
  21. package/dist/es/protvista-uniprot.js.map +1 -0
  22. package/dist/es/styles/loader-styles.d.ts +2 -0
  23. package/dist/es/styles/loader-styles.js +20 -0
  24. package/dist/es/styles/loader-styles.js.map +1 -0
  25. package/dist/es/styles/protvista-styles.d.ts +2 -0
  26. package/dist/es/styles/protvista-styles.js +79 -0
  27. package/dist/es/styles/protvista-styles.js.map +1 -0
  28. package/dist/protvista-uniprot.js +356 -0
  29. package/dist/protvista-uniprot.js.LICENSE.txt +81 -0
  30. package/dist/protvista-uniprot.js.map +1 -0
  31. package/package.json +5 -5
package/dist/es/config.json ADDED
@@ -0,0 +1,671 @@
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+ {
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+ "categories": [
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+ {
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+ "name": "DOMAINS_AND_SITES",
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+ "label": "Domains & sites",
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+ "trackType": "protvista-track",
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+ "tracks": [
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+ {
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+ "name": "domain",
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+ "label": "Domain",
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+ "filter": "DOMAIN",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Specific combination of secondary structures organized into a characteristic three-dimensional structure or fold"
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+ },
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+ {
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+ "name": "region",
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+ "label": "Region",
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+ "filter": "REGION",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Regions in multifunctional enzymes or fusion proteins, or characteristics of a region, e.g., protein-protein interactions mediation"
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+ },
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+ {
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+ "name": "motif",
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+ "label": "Motif",
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+ "filter": "MOTIF",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Short conserved sequence motif of biological significance"
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+ },
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+ {
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+ "name": "metal",
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+ "label": "Metal binding",
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+ "filter": "METAL",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Binding site for a metal ion"
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+ },
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+ {
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+ "name": "site",
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+ "label": "Site",
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+ "filter": "SITE",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Any interesting single amino acid site on the sequence"
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+ },
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+ {
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+ "name": "repeat",
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+ "label": "Repeat",
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+ "filter": "REPEAT",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Repeated sequence motifs or repeated domains within the protein"
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+ },
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+ {
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+ "name": "ca_bind",
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+ "label": "Calcium binding",
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+ "filter": "CA_BIND",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Calcium-binding regions, such as the EF-hand motif"
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+ },
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+ {
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+ "name": "dna_bind",
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+ "label": "DNA binding",
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+ "filter": "DNA_BIND",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "DNA-binding domains such as AP2/ERF domain, the ETS domain, the Fork-Head domain, the HMG box and the Myb domain"
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+ },
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+ {
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+ "name": "zn_fing",
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+ "label": "Zinc finger",
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+ "filter": "ZN_FING",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Small, functional, independently folded domain that coordinates one or more zinc ions"
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+ },
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+ {
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+ "name": "np_bind",
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+ "label": "Nucleotide binding",
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+ "filter": "NP_BIND",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "(aka flavin-binding). Region in the protein which binds nucleotide phosphates"
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+ },
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+ {
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+ "name": "binding",
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+ "label": "Binding site",
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+ "filter": "BINDING",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Binding site for any chemical group (co-enzyme, prosthetic group, etc.)"
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+ },
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+ {
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+ "name": "act_site",
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+ "label": "Active site",
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+ "filter": "ACT_SITE",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Amino acid(s) directly involved in the activity of an enzyme"
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+ }
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+ ]
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+ },
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+ {
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+ "name": "MOLECULE_PROCESSING",
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+ "label": "Molecule processing",
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+ "trackType": "protvista-track",
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+ "tracks": [
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+ {
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+ "name": "signal",
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+ "label": "Signal peptide",
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+ "filter": "SIGNAL",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "N-terminal signal peptide"
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+ },
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+ {
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+ "name": "chain",
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+ "label": "Chain",
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+ "filter": "CHAIN",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "(aka mature region). This describes the extent of a polypeptide chain in the mature protein following processing"
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+ },
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+ {
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+ "name": "transit",
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+ "label": "Transit peptide",
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+ "filter": "TRANSIT",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "This describes the extent of a transit peptide"
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+ },
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+ {
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+ "name": "init_met",
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+ "label": "Initiator methionine",
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+ "filter": "INIT_MET",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "This indicates that the initiator methionine is cleaved from the mature protein"
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+ },
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+ {
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+ "name": "propep",
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+ "label": "Propeptide",
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+ "filter": "PROPEP",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Part of a protein that is cleaved during maturation or activation"
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+ },
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+ {
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+ "name": "peptide",
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+ "label": "Peptide",
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+ "filter": "PEPTIDE",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "The position and length of an active peptide in the mature protein"
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+ }
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+ ]
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+ },
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+ {
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+ "name": "PTM",
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+ "label": "PTM",
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+ "trackType": "protvista-track",
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+ "tracks": [
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+ {
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+ "name": "mod_res",
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+ "label": "Modified residue",
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+ "filter": "MOD_RES",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Modified residues such as phosphorylation, acetylation, acylation, methylation"
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+ },
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+ {
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+ "name": "carbohyd",
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+ "label": "Glycosylation",
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+ "filter": "CARBOHYD",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Covalently attached glycan group(s)"
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+ },
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+ {
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+ "name": "disulfid",
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+ "label": "Disulfide bond",
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+ "filter": "DISULFID",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "The positions of cysteine residues participating in disulphide bonds"
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+ },
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+ {
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+ "name": "crosslnk",
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+ "label": "Cross-link",
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+ "filter": "CROSSLNK",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Covalent linkages of various types formed between two proteins or between two parts of the same protein"
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+ },
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+ {
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+ "name": "lipid",
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+ "label": "Lipidation",
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+ "filter": "LIPID",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Covalently attached lipid group(s)"
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+ }
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+ ]
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+ },
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+ {
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+ "name": "SEQUENCE_INFORMATION",
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+ "label": "Sequence information",
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+ "trackType": "protvista-track",
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+ "tracks": [
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+ {
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+ "name": "compbias",
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+ "label": "Compositional bias",
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+ "filter": "COMPBIAS",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions"
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+ },
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+ {
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+ "name": "conflict",
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+ "label": "Sequence conflict",
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+ "filter": "CONFLICT",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Sequence discrepancies of unknown origin"
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+ },
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+ {
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+ "name": "non_cons",
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+ "filter": "NON_CONS",
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+ "trackType": "protvista-track",
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+ "label": "Non-adjacent residues",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Indicates that two residues in a sequence are not consecutive and that there is an undetermined number of unsequenced residues between them"
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+ },
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+ {
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+ "name": "non_ter",
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+ "filter": "NON_TER",
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+ "trackType": "protvista-track",
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+ "label": "Non-terminal residue",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "The sequence is incomplete. The residue is not the terminal residue of the complete protein"
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+ },
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+ {
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+ "name": "unsure",
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+ "filter": "UNSURE",
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+ "trackType": "protvista-track",
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+ "label": "Sequence uncertainty",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Regions of a sequence for which the authors are unsure about the sequence assignment"
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+ },
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+ {
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+ "name": "non_std",
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+ "filter": "NON_STD",
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+ "trackType": "protvista-track",
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+ "label": "Non-standard residue",
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+ "data": [
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+ {
400
+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "Non-standard amino acids (selenocysteine and pyrrolysine)"
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+ }
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+ ]
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+ },
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+ {
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+ "name": "STRUCTURAL",
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+ "label": "Structural features",
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+ "trackType": "protvista-track",
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+ "tracks": [
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+ {
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+ "name": "helix",
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+ "label": "Helix",
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+ "filter": "HELIX",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "The positions of experimentally determined helical regions"
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+ },
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+ {
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+ "name": "strand",
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+ "label": "Beta strand",
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+ "filter": "STRAND",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "The positions of experimentally determined beta strands"
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+ },
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+ {
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+ "name": "turn",
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+ "label": "Turn",
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+ "filter": "TURN",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
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+ }
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+ ],
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+ "tooltip": "The positions of experimentally determined hydrogen-bonded turns"
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+ },
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+ {
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+ "name": "coiled",
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+ "label": "Coiled coil",
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+ "filter": "COILED",
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+ "trackType": "protvista-track",
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+ "data": [
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+ {
459
+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
461
+ }
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+ ],
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+ "tooltip": "Coiled coils are built by two or more alpha-helices that wind around each other to form a supercoil"
464
+ }
465
+ ]
466
+ },
467
+ {
468
+ "name": "STRUCTURE_COVERAGE",
469
+ "label": "PDBe 3D structure coverage",
470
+ "trackType": "protvista-track",
471
+ "tracks": [
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+ {
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+ "name": "pdbe_cover",
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+ "label": "PDBe coverage",
475
+ "trackType": "protvista-track",
476
+ "tooltip": "PDBe 3D structure coverage",
477
+ "data": [
478
+ {
479
+ "adapter": "protvista-structure-adapter",
480
+ "url": "https://www.ebi.ac.uk/proteins/api/proteins/{accession}"
481
+ }
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+ ]
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+ }
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+ ]
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+ },
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+ {
487
+ "name": "TOPOLOGY",
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+ "label": "Topology",
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+ "trackType": "protvista-track",
490
+ "tracks": [
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+ {
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+ "name": "topo_dom",
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+ "label": "Topological domain",
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+ "filter": "TOPO_DOM",
495
+ "trackType": "protvista-track",
496
+ "data": [
497
+ {
498
+ "adapter": "protvista-feature-adapter",
499
+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
500
+ }
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+ ],
502
+ "tooltip": "Location of non-membrane regions of membrane-spanning proteins"
503
+ },
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+ {
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+ "name": "transmem",
506
+ "label": "Transmembrane",
507
+ "filter": "TRANSMEM",
508
+ "trackType": "protvista-track",
509
+ "data": [
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+ {
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
513
+ }
514
+ ],
515
+ "tooltip": "Extent of a membrane-spanning region"
516
+ },
517
+ {
518
+ "name": "intramem",
519
+ "label": "Intramembrane",
520
+ "filter": "INTRAMEM",
521
+ "trackType": "protvista-track",
522
+ "data": [
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+ {
524
+ "adapter": "protvista-feature-adapter",
525
+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
526
+ }
527
+ ],
528
+ "tooltip": "Extent of a region located in a membrane without crossing it"
529
+ }
530
+ ]
531
+ },
532
+ {
533
+ "name": "MUTAGENESIS",
534
+ "label": "Mutagenesis",
535
+ "trackType": "protvista-track",
536
+ "tracks": [
537
+ {
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+ "name": "mutagen",
539
+ "label": "Mutagenesis",
540
+ "filter": "MUTAGEN",
541
+ "trackType": "protvista-track",
542
+ "data": [
543
+ {
544
+ "adapter": "protvista-feature-adapter",
545
+ "url": "https://www.ebi.ac.uk/proteins/api/features/{accession}"
546
+ }
547
+ ],
548
+ "tooltip": "Site which has been experimentally altered by mutagenesis"
549
+ },
550
+ {
551
+ "name": "othermutagen",
552
+ "label": "Other Mutagenesis",
553
+ "trackType": "protvista-track",
554
+ "data": [
555
+ {
556
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566
+ "label": "Proteomics",
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+ "adapter": "protvista-proteomics-adapter",
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+ "https://www.ebi.ac.uk/proteins/api/proteomics/{accession}",
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+ "https://www.ebi.ac.uk/proteins/api/proteomics-ptm/{accession}"
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+ "label": "Unique peptide",
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+ }
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+ ],
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+ "tooltip": ""
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+ "adapter": "protvista-feature-adapter",
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+ "url": "https://www.ebi.ac.uk/proteins/api/antigen/{accession}"
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+ "url": "https://www.ebi.ac.uk/proteins/api/variation/{accession}"
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+ }
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+ ],
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+ "tooltip": "Natural variant of the protein, including polymorphisms, variations between strains, isolates or cultivars, disease-associated mutations and RNA editing events"
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+ "url": "https://www.ebi.ac.uk/proteins/api/features/"
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+ "url": "https://www.ebi.ac.uk/proteins/api/variation/"
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+ "url": "https://www.ebi.ac.uk/proteins/api/antigen/"
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+ "type": "proteomics",
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+ "url": "https://www.ebi.ac.uk/proteins/api/proteomics/"
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+ }