protvista-uniprot 2.12.1 → 2.12.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/es/config.json +19 -0
- package/dist/es/protvista-ptm-exchange.js +6 -4
- package/dist/es/protvista-ptm-exchange.js.map +1 -1
- package/dist/protvista-uniprot.js +13 -13
- package/dist/protvista-uniprot.js.map +1 -1
- package/package.json +19 -19
- package/src/config.json +19 -0
- package/src/protvista-ptm-exchange.ts +21 -19
package/dist/es/config.json
CHANGED
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@@ -483,6 +483,25 @@
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}
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]
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},
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+
{
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"name": "EPITOPE",
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"label": "Epitopes",
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"trackType": "protvista-track",
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"tracks": [
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{
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"name": "epitope",
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"label": "Epitope",
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"trackType": "protvista-track",
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"data": [
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{
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"adapter": "protvista-feature-adapter",
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"url": "https://www.ebi.ac.uk/proteins/api/epitope/{accession}"
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}
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],
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"tooltip": ""
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}
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]
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},
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{
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"name": "ANTIGEN",
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"label": "Antigenic sequences",
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@@ -37,16 +37,18 @@ const convertPtmExchangePtms = (ptms, aa, absolutePosition) => {
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}
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const tooltip = `
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<h5>Description</h5><p>${phosphorylate(aa)}</p>
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-
${confidenceScore
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${confidenceScore
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? `<h5 data-article-id="mod_res_large_scale#confidence-score">Confidence Score</h5><p>${confidenceScore}</p>`
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: ''}
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${evidences
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? `<h5>Evidence</h5><ul>${evidences
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.map((id) => {
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const datasetID = id === 'Glue project' ? 'PXD012174' : id;
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return `<li title='${datasetID}' style="padding: .25rem 0">${datasetID}
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(<a href="https://
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(<a href="https://proteomecentral.proteomexchange.org/dataset/${datasetID}" style="color:#FFF" target="_blank">ProteomeXchange</a>)
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</li>
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${id === 'Glue project'
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`<li title="publication" style="padding: .25rem 0">Publication: 31819260 (<a href="https://pubmed.ncbi.nlm.nih.gov/31819260" style="color:#FFF" target="_blank">PubMed</a>)</li>`
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${id === 'Glue project'
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? `<li title="publication" style="padding: .25rem 0">Publication: 31819260 (<a href="https://pubmed.ncbi.nlm.nih.gov/31819260" style="color:#FFF" target="_blank">PubMed</a>)</li>`
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: ''}
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`;
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})
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@@ -1 +1 @@
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1
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-
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1
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{"version":3,"file":"protvista-ptm-exchange.js","sourceRoot":"","sources":["../../src/protvista-ptm-exchange.ts"],"names":[],"mappings":"AAgDA,IAAK,qBAIJ;AAJD,WAAK,qBAAqB;IACxB,yCAAgB,CAAA;IAChB,2CAAkB,CAAA;IAClB,2CAAkB,CAAA;AACpB,CAAC,EAJI,qBAAqB,KAArB,qBAAqB,QAIzB;AAED,MAAM,kBAAkB,GAAG;IACzB,CAAC,EAAE,iBAAiB;IACpB,CAAC,EAAE,iBAAiB;IACpB,CAAC,EAAE,kBAAkB;IACrB,CAAC,EAAE,eAAe;IAClB,CAAC,EAAE,kBAAkB;IACrB,CAAC,EAAE,iBAAiB;CACrB,CAAC;AAEF,MAAM,aAAa,GAAG,CAAC,EAAU,EAAE,EAAE;IACnC,MAAM,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,CAAC;IAC5B,IAAI,EAAE,IAAI,kBAAkB,EAAE;QAC5B,OAAO,kBAAkB,CAAC,EAAqC,CAAC,CAAC;KAClE;IACD,OAAO,CAAC,KAAK,CAAC,GAAG,EAAE,6CAA6C,CAAC,CAAC;IAClE,OAAO,EAAE,CAAC;AACZ,CAAC,CAAC;AAEF,MAAM,sBAAsB,GAAG,CAC7B,IAAW,EACX,EAAU,EACV,gBAAwB,EACxB,EAAE;IACF,MAAM,SAAS,GAAG;QAChB,GAAG,IAAI,CAAC,OAAO,CAAC,CAAC,EAAE,YAAY,EAAE,EAAE,EAAE,CACnC,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,OAAO,CAAC,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CACxC;KACF,CAAC;IACF,MAAM,gBAAgB,GAAG,IAAI,GAAG,CAC9B,IAAI,CAAC,OAAO,CAAC,CAAC,EAAE,YAAY,EAAE,EAAE,EAAE,CAChC,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,GAAG,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,EAAE,CAAC,UAAU,CAAC,kBAAkB,CAAC,CAAC,CACtE,CACF,CAAC;IACF,IAAI,eAAuB,CAAC;IAE5B,IAAI,CAAC,gBAAgB,CAAC,IAAI,EAAE;QAC1B,OAAO,CAAC,GAAG,CAAC,6BAA6B,CAAC,CAAC;KAC5C;SAAM,IAAI,gBAAgB,CAAC,IAAI,GAAG,CAAC,EAAE;QACpC,OAAO,CAAC,KAAK,CACX,2CAA2C,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,EAAE,CAC1E,CAAC;KACH;SAAM;QACL,CAAC,eAAe,CAAC,GAAG,gBAAgB,CAAC;KACtC;IAED,MAAM,OAAO,GAAG;2BACS,aAAa,CAAC,EAAE,CAAC;IAExC,eAAe;QACb,CAAC,CAAC,sFAAsF,eAAe,MAAM;QAC7G,CAAC,CAAC,EACN;IAEE,SAAS;QACP,CAAC,CAAC,wBAAwB,SAAS;aAC9B,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE;YACV,MAAM,SAAS,GAAG,EAAE,KAAK,cAAc,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE,CAAC;YAC3D,OAAO,cAAc,SAAS,+BAA+B,SAAS;8EACJ,SAAS;;gBAGvE,EAAE,KAAK,cAAc;gBACnB,CAAC,CAAC,2LAA2L;gBAC7L,CAAC,CAAC,EACN;eACC,CAAC;QACN,CAAC,CAAC;aACD,IAAI,CAAC,EAAE,CAAC,OAAO;QACpB,CAAC,CAAC,EACN;GACC,CAAC;IAEF,OAAO;QACL,MAAM,EAAE,aAAa;QACrB,IAAI,EAAE,YAAY;QAClB,KAAK,EAAE,gBAAgB;QACvB,GAAG,EAAE,gBAAgB;QACrB,KAAK,EAAE,UAAU;QACjB,cAAc,EAAE,OAAO;QACvB,KAAK,EAAE,qBAAqB,CAAC,eAAe,CAAC,IAAI,OAAO;KACzD,CAAC;AACJ,CAAC,CAAC;AAEF,MAAM,CAAC,MAAM,aAAa,GAAG,CAAC,IAAmB,EAAE,EAAE;IACnD,IAAI,IAAI,EAAE;QACR,MAAM,EAAE,QAAQ,EAAE,GAAG,IAAI,CAAC;QAE1B,MAAM,sBAAsB,GAC1B,EAAE,CAAC;QAEL,IAAI,QAAQ,EAAE;YACZ,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE;gBAC9B,KAAK,MAAM,GAAG,IAAI,OAAO,CAAC,IAAI,EAAE;oBAC9B,MAAM,gBAAgB,GAAG,CAAC,OAAO,CAAC,KAAK,GAAG,GAAG,CAAC,QAAQ,GAAG,CAAC,CAAC;oBAC3D,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,gBAAgB,CAAC,EAAE;wBACtC,OAAO,CAAC,KAAK,CACX,oEAAoE,CAAC,OAAO,CAAC,KAAK,MAChF,GAAG,CAAC,QACN,MAAM,CACP,CAAC;wBACF,uCAAuC;wBACvC,SAAS;qBACV;oBACD,MAAM,EAAE,GAAG,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,QAAQ,GAAG,CAAC,CAAC,CAAC;oBAC7C,IAAI,gBAAgB,IAAI,sBAAsB,EAAE;wBAC9C,IAAI,sBAAsB,CAAC,gBAAgB,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE;4BACtD,OAAO,CAAC,KAAK,CACX,6CAA6C,sBAAsB,CAAC,gBAAgB,CAAC,CAAC,EAAE,KAAK,EAAE,GAAG,CACnG,CAAC;yBACH;6BAAM;4BACL,sBAAsB,CAAC,gBAAgB,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;yBACzD;qBACF;yBAAM;wBACL,sBAAsB,CAAC,gBAAgB,CAAC,GAAG,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,EAAE,CAAC;qBAChE;iBACF;aACF;YAED,OAAO,MAAM,CAAC,OAAO,CAAC,sBAAsB,CAAC,CAAC,GAAG,CAC/C,CAAC,CAAC,gBAAgB,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,CACnC,sBAAsB,CAAC,IAAI,EAAE,EAAE,EAAE,CAAC,gBAAgB,CAAC,CACtD,CAAC;SACH;KACF;IACD,OAAO,EAAE,CAAC;AACZ,CAAC,CAAC"}
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