protvista-uniprot 2.10.6 → 2.10.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/es/filterConfig.js +4 -4
- package/dist/es/filterConfig.js.map +1 -1
- package/dist/es/protvista-uniprot-structure.js +5 -1
- package/dist/es/protvista-uniprot-structure.js.map +1 -1
- package/dist/protvista-uniprot.js +13 -13
- package/dist/protvista-uniprot.js.map +1 -1
- package/package.json +5 -5
- package/src/filterConfig.ts +4 -4
- package/src/protvista-uniprot-structure.ts +6 -1
package/dist/es/filterConfig.js
CHANGED
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@@ -25,7 +25,7 @@ const filterConfig = [
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text: 'Filter Consequence',
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},
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options: {
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-
labels: ['Likely
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+
labels: ['Likely pathogenic or pathogenic'],
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colors: [scaleColors.UPDiseaseColor],
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},
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filterData: (variants) => getFilteredVariants(variants, (variantPos) => { var _a; return (_a = variantPos.association) === null || _a === void 0 ? void 0 : _a.some((association) => association.disease); }),
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@@ -49,7 +49,7 @@ const filterConfig = [
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text: 'Filter Consequence',
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},
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options: {
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labels: ['Likely benign'],
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labels: ['Likely benign or benign'],
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colors: [scaleColors.UPNonDiseaseColor],
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},
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filterData: (variants) => getFilteredVariants(variants, (variantPos) => {
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@@ -64,7 +64,7 @@ const filterConfig = [
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text: 'Filter Consequence',
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},
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options: {
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labels: ['Uncertain'],
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labels: ['Uncertain significance'],
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colors: [scaleColors.othersColor],
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},
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filterData: (variants) => getFilteredVariants(variants, (variantPos) => (typeof variantPos.clinicalSignificances === 'undefined' &&
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@@ -93,7 +93,7 @@ const filterConfig = [
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text: 'Filter Provenance',
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},
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options: {
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labels: ['ClinVar
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labels: ['ClinVar'],
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colors: ['#9f9f9f'],
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},
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filterData: (variants) => getFilteredVariants(variants, (variantPos) => variantPos.xrefNames &&
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@@ -1 +1 @@
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1
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-
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1
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+
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@@ -14,6 +14,7 @@ const PDBLinks = [
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{ name: 'PDBsum', link: 'https://www.ebi.ac.uk/pdbsum/' },
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];
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const alphaFoldLink = 'https://alphafold.ebi.ac.uk/entry/';
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const foldseekLink = `https://search.foldseek.com/search`;
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const processPDBData = (data) => data.dbReferences
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.filter((xref) => xref.type === 'PDB')
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.sort((refA, refB) => refA.id.localeCompare(refB.id))
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@@ -79,6 +80,9 @@ const AFMetaInfo = html `
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Some regions with low pLDDT may be unstructured in isolation.
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</p>
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`;
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const foldseekURL = (accession, sourceDB) => {
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return html `<a href="${foldseekLink}?accession=${accession}&source=${sourceDB}">Foldseek</a>`;
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};
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const styleId = 'protvista-styles';
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class ProtvistaUniprotStructure extends LitElement {
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constructor() {
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@@ -272,7 +276,7 @@ class ProtvistaUniprotStructure extends LitElement {
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${downloadLink
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? html `<a href="${downloadLink}" class="download-link"
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>${svg `${unsafeHTML(downloadIcon)}`}</a
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-
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> · ${foldseekURL(source === 'PDB' ? id : this.accession, source === 'PDB' ? 'PDB' : 'AlphaFoldDB')}`
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: ''}
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</td>
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</tr>`)}
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@@ -1 +1 @@
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1
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-
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1
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+
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