protvista-uniprot 2.10.0 → 2.10.2

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Files changed (6) hide show
  1. package/dist/es/protvista-ptm-exchange.js +29 -22
  2. package/dist/es/protvista-ptm-exchange.js.map +1 -1
  3. package/dist/protvista-uniprot.js +13 -13
  4. package/dist/protvista-uniprot.js.map +1 -1
  5. package/package.json +1 -1
  6. package/src/protvista-ptm-exchange.ts +41 -34
package/dist/es/protvista-ptm-exchange.js CHANGED
@@ -40,7 +40,9 @@ const convertPtmExchangePtms = (ptms, aa, absolutePosition) => {
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  ${confidenceScore ? `<h5>Confidence Score</h5><p>${confidenceScore}</p>` : ''}
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  ${evidences
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  ? `<h5>Evidence</h5><ul>${evidences
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- .map((id) => `<li title='${id}' style="padding: .25rem 0">${id}&nbsp;(<a href="https://www.ebi.ac.uk/pride/archive/projects/${id}" style="color:#FFF" target="_blank">PRIDE</a>)</li>`)
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+ .map((id) => `<li title='${id}' style="padding: .25rem 0">${id}&nbsp;
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+ ${id.startsWith('PXD') ? `(<a href="https://www.ebi.ac.uk/pride/archive/projects/${id}" style="color:#FFF" target="_blank">PRIDE</a>)` : ''}
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+ </li>`)
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  .join('')}</ul>`
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  : ''}
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  `;
@@ -55,30 +57,35 @@ const convertPtmExchangePtms = (ptms, aa, absolutePosition) => {
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  };
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  };
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  export const transformData = (data) => {
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- const { features } = data;
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- const absolutePositionToPtms = {};
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- for (const feature of features) {
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- for (const ptm of feature.ptms) {
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- const absolutePosition = +feature.begin + ptm.position - 1;
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- if (!Number.isFinite(absolutePosition)) {
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- console.error(`Encountered infinite number: +feature.begin + ptm.position - 1 = ${+feature.begin} + ${ptm.position} - 1`);
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- // eslint-disable-next-line no-continue
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- continue;
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- }
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- const aa = feature.peptide[ptm.position - 1];
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- if (absolutePosition in absolutePositionToPtms) {
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- if (absolutePositionToPtms[absolutePosition].aa !== aa) {
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- console.error(`One PTM has different amino acid values: [${absolutePositionToPtms[absolutePosition].aa}, ${aa}]`);
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- }
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- else {
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- absolutePositionToPtms[absolutePosition].ptms.push(ptm);
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+ if (data) {
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+ const { features } = data;
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+ const absolutePositionToPtms = {};
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+ if (features) {
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+ for (const feature of features) {
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+ for (const ptm of feature.ptms) {
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+ const absolutePosition = +feature.begin + ptm.position - 1;
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+ if (!Number.isFinite(absolutePosition)) {
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+ console.error(`Encountered infinite number: +feature.begin + ptm.position - 1 = ${+feature.begin} + ${ptm.position} - 1`);
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+ // eslint-disable-next-line no-continue
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+ continue;
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+ }
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+ const aa = feature.peptide[ptm.position - 1];
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+ if (absolutePosition in absolutePositionToPtms) {
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+ if (absolutePositionToPtms[absolutePosition].aa !== aa) {
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+ console.error(`One PTM has different amino acid values: [${absolutePositionToPtms[absolutePosition].aa}, ${aa}]`);
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+ }
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+ else {
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+ absolutePositionToPtms[absolutePosition].ptms.push(ptm);
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+ }
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+ }
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+ else {
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+ absolutePositionToPtms[absolutePosition] = { ptms: [ptm], aa };
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+ }
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  }
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  }
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- else {
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- absolutePositionToPtms[absolutePosition] = { ptms: [ptm], aa };
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- }
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+ return Object.entries(absolutePositionToPtms).map(([absolutePosition, { ptms, aa }]) => convertPtmExchangePtms(ptms, aa, +absolutePosition));
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  }
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  }
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- return Object.entries(absolutePositionToPtms).map(([absolutePosition, { ptms, aa }]) => convertPtmExchangePtms(ptms, aa, +absolutePosition));
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+ return [];
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  };
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  //# sourceMappingURL=protvista-ptm-exchange.js.map
package/dist/es/protvista-ptm-exchange.js.map CHANGED
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