project-graph-mcp 2.3.2 → 2.4.1

package/web/follow-controller.js

@@ -1,10 +1,11 @@
 // @ctx .context/web/follow-controller.ctx
 /**
- * FollowController — Central orchestrator for Follow Mode.
+ * FollowController — Central orchestrator for Follow Mode (Magic Automation Theater).
  *
- * Classifies incoming tool-events and dispatches debounced focus-change
- * signals to subscribed panels (graph, code-viewer, monitor).
- * Also manages the status ribbon text shown during active follow.
+ * Classifies incoming tool-events and drives the UI:
+ *  1. Switches the active panel (graph, code, analysis) via hash routing.
+ *  2. Dispatches debounced focus-change signals to visible panels.
+ *  3. Manages the status ribbon text shown during active follow.
  *
  * NOTE: Does NOT import from app.js to avoid circular dependency.
  * Call init(events, emit) before enable().
@@ -13,6 +14,9 @@
 /** Debounce delay for heavy visual updates (camera, code loading) */
 const HEAVY_DEBOUNCE = 800;
 
+/** Delay to allow panel mount after hash change before sending focus */
+const PANEL_MOUNT_DELAY = 300;
+
 class FollowController {
   /** @type {boolean} */
   enabled = false;
@@ -30,6 +34,8 @@ class FollowController {
   _events = null;
   /** @type {Function|null} */
   _emit = null;
+  /** @type {string} Current active panel type in follow mode */
+  _activePanel = 'graph';
 
   /**
    * Late-bind events bus and emit function (breaks circular import).
@@ -48,6 +54,7 @@ class FollowController {
 
     // Save current location for restoring later
     this._previousHash = location.hash;
+    this._activePanel = 'graph';
 
     // Bind tool-event listener
     this._boundHandler = (e) => this._onToolEvent(e.detail);
@@ -105,12 +112,54 @@ class FollowController {
     // Visual focus — classify and dispatch (debounced for heavy ops)
     const action = this._classify(shortName, args, isCall, isResult, event);
     if (action) {
-      if (action.immediate) {
-        this._emitFocusNow(action.focus);
-      } else {
-        this._emitFocusDebounced(action.focus, action.debounce || HEAVY_DEBOUNCE);
+      this._routeAndFocus(action);
+    }
+  }
+
+  /**
+   * Route to the correct panel, then emit focus.
+   * Two-phase: if the target panel differs from current, switch hash first,
+   * then wait for mount before emitting focus.
+   * @param {{focus: object, debounce?: number, immediate?: boolean}} action
+   */
+  _routeAndFocus(action) {
+    const targetPanel = action.focus.type === 'file' ? 'code' : action.focus.type || 'graph';
+
+    const needsSwitch = this._activePanel !== targetPanel;
+    this._activePanel = targetPanel;
+
+    if (needsSwitch) {
+      // Build new hash for the follow section
+      const hashSection = this._panelToHash(targetPanel);
+      // Use replaceState to avoid polluting browser history during follow
+      const newHash = `#${hashSection}`;
+      if (location.hash !== newHash) {
+        // We need to trigger hashchange so the layout system picks it up
+        location.hash = hashSection;
       }
     }
+
+    // Emit focus — with delay if panel needed mounting, otherwise respect debounce
+    if (needsSwitch) {
+      // Wait for panel to mount after layout change
+      setTimeout(() => {
+        this._emitFocusNow(action.focus);
+      }, PANEL_MOUNT_DELAY);
+    } else if (action.immediate) {
+      this._emitFocusNow(action.focus);
+    } else {
+      this._emitFocusDebounced(action.focus, action.debounce || HEAVY_DEBOUNCE);
+    }
+  }
+
+  /**
+   * Map panel type to hash section.
+   * In follow mode, graph/code/analysis all live under the 'follow' section
+   * but we can use the hash to give routing hints.
+   */
+  _panelToHash(panel) {
+    // All panels are within the 'follow' layout, no need to switch section
+    return 'follow';
   }
 
   /**
@@ -136,6 +185,9 @@ class FollowController {
       if (args.action === 'call_chain' && args.from && args.to) {
         return { focus: { type: 'graph', target: { from: args.from, to: args.to }, action: 'chain' }, immediate: true };
       }
+      if (args.action === 'sub_projects') {
+        return { focus: { type: 'graph', action: 'fit' }, immediate: true };
+      }
     }
 
     // === Skeleton / Overview ===
@@ -148,9 +200,25 @@ class FollowController {
       return { focus: { type: 'file', target: args.path }, debounce: HEAVY_DEBOUNCE };
     }
 
+    // === Documentation ===
+    if (tool === 'docs' && args.file) {
+      return { focus: { type: 'file', target: args.file }, debounce: HEAVY_DEBOUNCE };
+    }
+
     // === Analysis ===
     if (tool === 'analyze') {
-      return { focus: { type: 'analysis' }, immediate: true };
+      // Analysis events should pulse the graph to show "thinking"
+      return { focus: { type: 'graph', action: 'fit' }, immediate: true };
+    }
+
+    // === JSDoc ===
+    if (tool === 'jsdoc' && args.path) {
+      return { focus: { type: 'file', target: args.path }, debounce: HEAVY_DEBOUNCE };
+    }
+
+    // === Focus zone ===
+    if (tool === 'get_focus_zone') {
+      return { focus: { type: 'graph', action: 'fit' }, immediate: true };
     }
 
     return null;
@@ -169,23 +237,24 @@ class FollowController {
 
     switch (tool) {
       case 'navigate': {
-        if (args.action === 'expand') return `Expanding ${args.symbol}`;
-        if (args.action === 'deps') return `Tracing deps of ${args.symbol}`;
-        if (args.action === 'usages') return `Finding usages of ${args.symbol}`;
-        if (args.action === 'call_chain') return `Tracing ${args.from} → ${args.to}`;
-        if (args.action === 'sub_projects') return `Scanning sub-projects`;
-        return `Navigating graph`;
+        if (args.action === 'expand') return `🔍 Expanding ${args.symbol}`;
+        if (args.action === 'deps') return `🔗 Tracing deps of ${args.symbol}`;
+        if (args.action === 'usages') return `📡 Finding usages of ${args.symbol}`;
+        if (args.action === 'call_chain') return `⛓ Tracing ${args.from} → ${args.to}`;
+        if (args.action === 'sub_projects') return `📦 Scanning sub-projects`;
+        return `🧭 Navigating graph`;
       }
-      case 'get_skeleton': return `Scanning project structure`;
-      case 'get_ai_context': return `Loading AI context`;
-      case 'compact': return `Compacting ${short}`;
-      case 'analyze': return `Analyzing: ${args.action || ''}`;
-      case 'docs': return `Documentation: ${args.action || ''}`;
-      case 'jsdoc': return `JSDoc: ${args.action || ''}`;
-      case 'db': return `Database: ${args.action || ''}`;
-      case 'testing': return `Tests: ${args.action || ''}`;
-      case 'filters': return `Filters: ${args.action || ''}`;
-      default: return tool ? `Running ${tool}` : '';
+      case 'get_skeleton': return `🗺️ Scanning project structure`;
+      case 'get_ai_context': return `🧠 Loading AI context`;
+      case 'get_focus_zone': return `🎯 Analyzing recent changes`;
+      case 'compact': return `📄 Reading ${short}`;
+      case 'analyze': return `📊 Analyzing: ${args.action || ''}`;
+      case 'docs': return `📝 Documentation: ${args.action || ''}`;
+      case 'jsdoc': return `📋 JSDoc: ${args.action || ''}`;
+      case 'db': return `🗄️ Database: ${args.action || ''}`;
+      case 'testing': return `🧪 Tests: ${args.action || ''}`;
+      case 'filters': return `⚙️ Filters: ${args.action || ''}`;
+      default: return tool ? `⚡ ${tool}` : '';
     }
   }
 

package/web/panels/dep-graph.js

@@ -115,6 +115,154 @@ function buildBasenameIndex(knownFiles) {
   return _basenameIndex;
 }
 
+/**
+ * Build a file-level graph from skeleton data.
+ * Each file becomes a Node, each import relationship becomes a Connection.
+ *
+ * @param {object} skeleton - skeleton from get_skeleton
+ * @returns {{ editor: NodeEditor, fileMap: Map<string, string> }}
+ */
+function buildFileGraph(skeleton) {
+  const editor = new NodeEditor();
+  const fileMap = new Map(); // filePath → nodeId
+  const dirMap = new Map(); // dirPath → nodeId (hub nodes)
+
+  // Collect all files that have symbols
+  const files = new Set();
+  const assetFiles = new Set(); // non-source files (.css, .html, .json, .md, etc.)
+  // From nodes (classes) — each has .f (file) property
+  for (const data of Object.values(skeleton.n || {})) {
+    if (data.f) files.add(data.f);
+  }
+  // From exports map — keys are files
+  for (const file of Object.keys(skeleton.X || {})) {
+    files.add(file);
+  }
+  // From source files without symbols
+  for (const [dir, names] of Object.entries(skeleton.f || {})) {
+    for (const name of names) {
+      files.add(dir === './' ? name : dir + name);
+    }
+  }
+  // From non-source/asset files (.css, .html, .json, .md, etc.)
+  for (const [dir, names] of Object.entries(skeleton.a || {})) {
+    for (const name of names) {
+      const fullPath = dir === './' ? name : dir + name;
+      files.add(fullPath);
+      assetFiles.add(fullPath);
+    }
+  }
+
+  if (files.size === 0) return { editor, fileMap };
+
+  // Group files by directory
+  const dirFiles = new Map();
+  for (const file of files) {
+    const dir = dirOf(file);
+    if (!dirFiles.has(dir)) dirFiles.set(dir, []);
+    dirFiles.get(dir).push(file);
+  }
+
+  // TODO Phase 2: Create directory hub nodes when LOD zoom expansion is ready
+  // Hub nodes without connections create disconnected groups — skip for now
+  // for (const [dir, dirFileList] of dirFiles) {
+  //   if (dirFileList.length < 2) continue;
+  //   const dirLabel = dir.replace(/\/$/, '').split('/').pop() || 'root';
+  //   const hubNode = new Node(dirLabel, { type: 'directory', category: 'server', shape: 'hexagon' });
+  //   hubNode.params = { path: dir, dir, isHub: true };
+  //   hubNode.addOutput('out', new Output(S_EXPORT, ''));
+  //   hubNode.addInput('in', new Input(S_IMPORT, ''));
+  //   editor.addNode(hubNode);
+  //   dirMap.set(dir, hubNode.id);
+  // }
+
+  // Create file nodes (standard HTML nodes with icons)
+  for (const file of files) {
+    const dir = dirOf(file);
+    const label = baseName(file);
+    const isAsset = assetFiles.has(file);
+    const node = new Node(label, {
+      type: isAsset ? 'asset' : 'file',
+      category: isAsset ? 'asset' : 'file',
+    });
+    node.params = { path: file, dir };
+
+    // Every file has one output (exports) and one input (imports)
+    node.addOutput('out', new Output(S_EXPORT, ''));
+    node.addInput('in', new Input(S_IMPORT, ''));
+
+    editor.addNode(node);
+    fileMap.set(file, node.id);
+  }
+
+  // Build import edges from skeleton.I (file-level import map)
+  // skeleton.I[file] = [source1, source2, ...]
+  const edgesAdded = new Set();
+  for (const [srcFile, sources] of Object.entries(skeleton.I || {})) {
+    const srcId = fileMap.get(srcFile);
+    if (!srcId) continue;
+
+    for (const impPath of sources) {
+      // Skip node builtins and external packages
+      if (impPath.startsWith('node:') || (!impPath.startsWith('.') && !impPath.startsWith('/'))) continue;
+
+      const targetFile = resolveImport(impPath, srcFile, files);
+      if (!targetFile) continue;
+
+      const tgtId = fileMap.get(targetFile);
+      if (!tgtId || tgtId === srcId) continue;
+
+      const edgeKey = `${srcId}->${tgtId}`;
+      if (edgesAdded.has(edgeKey)) continue;
+      edgesAdded.add(edgeKey);
+
+      const srcNode = editor.getNode(srcId);
+      const tgtNode = editor.getNode(tgtId);
+      try {
+        const conn = new Connection(srcNode, 'out', tgtNode, 'in');
+        // Phase 3: tag cross-directory connections as "via"
+        const srcDir = dirOf(srcFile);
+        const tgtDir = dirOf(targetFile);
+        if (srcDir !== tgtDir) {
+          conn._via = true;
+          conn._srcDir = srcDir;
+          conn._tgtDir = tgtDir;
+        }
+        editor.addConnection(conn);
+      } catch {
+        // Skip invalid connections
+      }
+    }
+  }
+
+  // Hub node: find node with highest connectivity → module category
+  const connCounts = new Map();
+  for (const conn of editor.getConnections()) {
+    connCounts.set(conn.from, (connCounts.get(conn.from) || 0) + 1);
+    connCounts.set(conn.to, (connCounts.get(conn.to) || 0) + 1);
+  }
+  let maxConns = 0;
+  let hubId = null;
+  for (const [nodeId, count] of connCounts) {
+    if (count > maxConns) {
+      maxConns = count;
+      hubId = nodeId;
+    }
+  }
+  if (hubId) {
+    const hubNode = editor.getNode(hubId);
+    if (hubNode && hubNode.options) {
+      hubNode.options.category = 'module';
+    }
+  }
+
+  // ── Build Reverse ID Lookup ──
+  const idToPath = new Map();
+  for (const [path, id] of fileMap.entries()) idToPath.set(id, path);
+
+  return { editor, fileMap, dirMap, dirFiles, idToPath };
+}
+
 /**
  * Build a hierarchical SubgraphNode graph:
  *   Level 0: directories (SubgraphNode)
@@ -723,7 +871,11 @@ export class DepGraph extends Symbiote {
     if (!loader) return;
     loader.setAttribute('data-hidden', '');
     // Remove from DOM after fade to avoid blocking pointer events
-    setTimeout(() => loader.remove(), 350);
+    setTimeout(() => {
+      loader.remove();
+      // Replay any follow-focus that arrived while the graph was building
+      this._replayPendingFollowFocus();
+    }, 350);
   }
 
   /** Show (or re-show) the PCB preloader overlay — safe to call multiple times */
@@ -891,18 +1043,20 @@ export class DepGraph extends Symbiote {
         viewModeBtn.removeAttribute('data-active');
       }
     }
-    // Hide structured-only buttons in flat mode
     this._updateStructuredOnlyVisibility(this._viewMode);
-    viewModeBtn?.addEventListener('click', () => {
-      const wantFlat = this._viewMode !== 'flat';
-      this._viewMode = wantFlat ? 'flat' : 'structured';
+    
+    this._setMode = (newMode) => {
+      if (this._viewMode === newMode) return;
+      this._viewMode = newMode;
       const label = this._viewMode === 'flat' ? 'FLAT' : 'TREE';
       const icon = this._viewMode === 'flat' ? 'account_tree' : 'grid_view';
-      viewModeBtn.innerHTML = `<span class="material-symbols-outlined">${icon}</span>${label}`;
-      if (this._viewMode === 'structured') {
-        viewModeBtn.setAttribute('data-active', '');
-      } else {
-        viewModeBtn.removeAttribute('data-active');
+      if (viewModeBtn) {
+        viewModeBtn.innerHTML = `<span class="material-symbols-outlined">${icon}</span>${label}`;
+        if (this._viewMode === 'structured') {
+          viewModeBtn.setAttribute('data-active', '');
+        } else {
+          viewModeBtn.removeAttribute('data-active');
+        }
       }
       this._updateStructuredOnlyVisibility(this._viewMode);
 
@@ -923,6 +1077,11 @@ export class DepGraph extends Symbiote {
       if (state.skeleton) {
         this._buildGraph(state.skeleton);
       }
+    };
+
+    viewModeBtn?.addEventListener('click', () => {
+      const wantFlat = this._viewMode !== 'flat';
+      this._setMode(wantFlat ? 'flat' : 'structured');
     });
 
     // Connection Path Style toggling
@@ -981,8 +1140,14 @@ export class DepGraph extends Symbiote {
       requestAnimationFrame(() => this._buildGraph(e.detail));
     };
     
+    this._onFollowStateChanged = (e) => {
+      const enabled = e.detail?.enabled;
+      if (enabled && this._viewMode !== 'flat') {
+        this._setMode('flat');
+      }
+    };
+    
     this._onFollowFocusChanged = (e) => {
-      if (this.style.display === 'none' || this.offsetWidth === 0) return;
       this._handleFollowFocus(e.detail);
     };
     
@@ -1018,6 +1183,7 @@ export class DepGraph extends Symbiote {
 
     // Autopilot: listen for orchestrator events
     events.addEventListener('follow-focus-changed', this._onFollowFocusChanged);
+    events.addEventListener('follow-state-changed', this._onFollowStateChanged);
 
     // Update route within graph section
     // On node click → save file path (just focusing)
@@ -1049,10 +1215,7 @@ export class DepGraph extends Symbiote {
           // Root level: path goes into ?focus= parameter
           this._updateHashParam('focus', path);
           this._updateHashParam('in', null);
-          // Pan/zoom to the clicked node — it's already visible, no need to drill
-          if (nodeId && this._canvas?.flyToNode) {
-            this._canvas.flyToNode(nodeId, { zoom: 0.9 });
-          }
+
         } else {
           // Inside a group: preserve drill context URL, set &focus= with relative name
           const drillBase = window.location.hash.split('?')[0]; // e.g. #graph/src/analysis/
@@ -1063,10 +1226,7 @@ export class DepGraph extends Symbiote {
           this._updateHashParam('focus', relativeName);
           this._updateHashParam('in', '1');
           
-          // Pan/zoom to the clicked node within current subgraph
-          if (nodeId && this._canvas?.flyToNode) {
-            this._canvas.flyToNode(nodeId, { zoom: 0.9 });
-          }
+
         }
         // Sync: highlight file in the tree sidebar
         emit('file-selected', { path, source: 'canvas' });
@@ -1155,6 +1315,7 @@ export class DepGraph extends Symbiote {
   disconnectedCallback() {
     super.disconnectedCallback?.();
     if (this._onSkeletonLoaded) events.removeEventListener('skeleton-loaded', this._onSkeletonLoaded);
+    if (this._onFollowStateChanged) events.removeEventListener('follow-state-changed', this._onFollowStateChanged);
     if (this._onFollowFocusChanged) events.removeEventListener('follow-focus-changed', this._onFollowFocusChanged);
     if (this._onFileSelected) events.removeEventListener('file-selected', this._onFileSelected);
     if (this._onHashChange) window.removeEventListener('hashchange', this._onHashChange);
@@ -1558,6 +1719,8 @@ export class DepGraph extends Symbiote {
       this._setProgress(15, 'Parsing graph…', isStructured ? 'structured mode' : 'flat mode');
       if (isStructured) {
         ({ editor, fileMap, dirFiles, dirNodeMap, idToPath, symbolMap } = buildStructuredGraph(skeleton));
+      } else {
+        ({ editor, fileMap, dirFiles, idToPath, symbolMap: symbolMap = new Map() } = buildFileGraph(skeleton));
       }
 
       this._setProgress(40, 'Building nodes…', `${editor.getNodes().length} nodes`);
@@ -2492,9 +2655,21 @@ export class DepGraph extends Symbiote {
    * @param {object} detail 
    */
   _handleFollowFocus({ type, target, action }) {
-    if (!this._editor || !this._canvas) return;
-    if (type !== 'graph' && type !== 'file') return; // React to graph and file actions
+    if (type !== 'graph' && type !== 'file') return;
+
+    // If graph isn't ready yet, queue the focus and replay after build
+    if (!this._editor || !this._canvas || !this._graphBuilt) {
+      this._pendingFollowFocus = { type, target, action };
+      return;
+    }
 
+    this._executeFollowFocus(type, target, action);
+  }
+
+  /**
+   * Execute a follow focus action (called when graph is confirmed ready).
+   */
+  _executeFollowFocus(type, target, action) {
     if (type === 'graph') {
       if (action === 'focus' && target) {
         this._focusSymbol(target);
@@ -2511,6 +2686,17 @@ export class DepGraph extends Symbiote {
     }
   }
 
+  /**
+   * Replay any pending follow focus that was queued before the graph was ready.
+   */
+  _replayPendingFollowFocus() {
+    if (this._pendingFollowFocus) {
+      const { type, target, action } = this._pendingFollowFocus;
+      this._pendingFollowFocus = null;
+      this._executeFollowFocus(type, target, action);
+    }
+  }
+
   // ── Phase 4: Camera Animation & Code Drill-down ──
 
   /**

package/vendor/symbiote-node/CHANGELOG.md

@@ -1,31 +0,0 @@
-# Changelog
-
-All notable changes to symbiote-node will be documented in this file.
-
-## [0.3.0-alpha.0] — 2026-04-18
-
-### Fixed
-- **Memory leak**: zombie `setTimeout` loops in SubgraphNode preview rendering — replaced with on-demand redraws
-- **Memory leak**: event listener accumulation in `NodeCanvas.setEditor()` — added explicit unsubscribe on context switch
-- **Memory leak**: incorrect `cancelAnimationFrame` cleanup for `setTimeout` IDs in `NodeViewManager.removeView()`
-- **Layout overlap**: nodes measured as 4px height (DOM not ready) caused overlap — enforced minimum `nodeHeight` floor in `getSize()`
-- **Inspector z-index**: panel header overlapped toolbar buttons — removed header, added toolbar-aware padding
-
-### Added
-- `Editor.removeAllListeners()` — clean teardown method for editor event system
-- `computeTreeLayout()` — directory-hierarchy-aware tree layout with indent levels
-- Shape primitives: `CircleShape`, `DiamondShape`, `PillShape`, `RectShape`
-- PCB dark theme enhancements: improved node styling, copper trace connections
-
-### Breaking
-- `InspectorPanel` no longer renders a title header bar — consumers relying on `.insp-header` CSS should update
-
-## [0.2.1] — 2026-04-13
-
-- Initial open-source release
-- Node graph editor with Symbiote.js web components
-- Sugiyama-based auto layout (`computeAutoLayout`)
-- PCB/Carbon theming system
-- Inspector panel with resize handle
-- Subgraph navigation (drill-down/drill-up)
-- Execution engine with topological sorting

package/vendor/symbiote-node/LICENSE

@@ -1,21 +0,0 @@
-MIT License
-
-Copyright (c) 2026 RND-PRO
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.