project-graph-mcp 2.3.0 → 2.3.2

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "project-graph-mcp",
-  "version": "2.3.0",
+  "version": "2.3.2",
   "type": "module",
   "description": "MCP server for AI agents — project graph, code quality analysis, visual web explorer. JS, TS, Python, Go.",
   "main": "src/network/server.js",
@@ -10,7 +10,6 @@
   "publishConfig": {
     "access": "public"
   },
-
   "scripts": {
     "start": "node src/network/server.js",
     "test": "node --test tests/*.test.js"
@@ -40,7 +39,6 @@
   "license": "MIT",
   "dependencies": {
     "@symbiotejs/symbiote": "^3.2.1",
-    "symbiote-node": "file:vendor/symbiote-node",
     "ws": "^8.20.0"
   },
   "engines": {

package/src/network/web-server.js

@@ -1,6 +1,6 @@
 // @ctx .context/src/network/web-server.ctx
 import e from"node:http";import t from"node:fs";import o from"node:path";import n from"node:crypto";import{fileURLToPath as a}from"node:url";import{createRequire as _createRequire}from"node:module";import{WebSocketServer as s}from"ws";import{createServer as i}from"../mcp/mcp-server.js";import c from"../core/event-bus.js";import{registerService as r}from"./local-gateway.js";import{compressFile as _cf}from"../compact/compress.js";import{expandFile as _ef}from"../compact/expand.js";import{setRoots as _setRoots}from"../core/workspace.js";
-const d=o.dirname(a(import.meta.url)),p=o.join(d,"..","..");const _rq=_createRequire(import.meta.url);let _pkgVersion="0.0.0";try{_pkgVersion=JSON.parse(t.readFileSync(o.join(p,"package.json"),"utf8")).version}catch{}function _rv(k){try{const r=_rq.resolve(k);const marker=o.sep+"node_modules"+o.sep+k.replace(/\//g,o.sep);const idx=r.lastIndexOf(marker);if(idx>=0)return r.substring(0,idx+marker.length);return o.dirname(r)}catch{return o.join(p,"node_modules",...k.split("/"))}}const m=o.join(p,"web"),h={"symbiote-node":_rv("symbiote-node"),symbiote:_rv("@symbiotejs/symbiote")},f={".html":"text/html",".js":"text/javascript",".mjs":"text/javascript",".css":"text/css",".json":"application/json",".svg":"image/svg+xml",".png":"image/png",".ico":"image/x-icon",".woff2":"font/woff2"};
+const d=o.dirname(a(import.meta.url)),p=o.join(d,"..","..");const _rq=_createRequire(import.meta.url);let _pkgVersion="0.0.0";try{_pkgVersion=JSON.parse(t.readFileSync(o.join(p,"package.json"),"utf8")).version}catch{}function _rv(k){try{const r=_rq.resolve(k);const marker=o.sep+"node_modules"+o.sep+k.replace(/\//g,o.sep);const idx=r.lastIndexOf(marker);if(idx>=0)return r.substring(0,idx+marker.length);return o.dirname(r)}catch{return o.join(p,"node_modules",...k.split("/"))}}const m=o.join(p,"web"),_symNodeVendor=o.join(p,"vendor","symbiote-node"),h={"symbiote-node":t.existsSync(_symNodeVendor)?_symNodeVendor:_rv("symbiote-node"),symbiote:_rv("@symbiotejs/symbiote")},f={".html":"text/html",".js":"text/javascript",".mjs":"text/javascript",".css":"text/css",".json":"application/json",".svg":"image/svg+xml",".png":"image/png",".ico":"image/x-icon",".woff2":"font/woff2"};
 function g(e,n){const a=o.normalize(e).replace(/^(\.\.[/\\])+/,""),s=a.match(/^[/\\]?vendor[/\\]([^/\\]+)[/\\]?(.*)/);let i,c;if(s&&h[s[1]]?(c=h[s[1]],i=o.join(c,s[2]||"index.js")):(c=m,i=o.join(m,"/"===a?"index.html":a)),!i.startsWith(c))return n.writeHead(403),void n.end("Forbidden");if(t.existsSync(i)&&t.statSync(i).isDirectory()&&(i=o.join(i,"index.html")),!t.existsSync(i))return n.writeHead(404),void n.end("Not Found");const r=o.extname(i),l=f[r]||"application/octet-stream",d=t.readFileSync(i);n.writeHead(200,{"Content-Type":l,"Cache-Control":"no-cache, no-store, must-revalidate"}),n.end(d)}
 function u(e){return n.createHash("sha1").update(e+"258EAFA5-E914-47DA-95CA-5AB5ADF35C70").digest("base64")}
 function y(e){const t=Buffer.from(e,"utf8"),o=t.length;let n;return o<126?(n=Buffer.alloc(2),n[0]=129,n[1]=o):o<65536?(n=Buffer.alloc(4),n[0]=129,n[1]=126,n.writeUInt16BE(o,2)):(n=Buffer.alloc(10),n[0]=129,n[1]=127,n.writeBigUInt64BE(BigInt(o),2)),Buffer.concat([n,t])}

package/vendor/symbiote-node/engine/AgentUICommands.js

@@ -0,0 +1,100 @@
+/**
+ * AgentUICommands.js - Agent UI control command builders
+ *
+ * Pure data builders for WebSocket messages that control the UI.
+ * No WebSocket dependency — produces message objects for P23 bridge to send.
+ *
+ * @module agi-graph/AgentUICommands
+ */
+
+/**
+ * @typedef {object} UICommand
+ * @property {string} type - Command type (ui:layout, ui:focus, etc.)
+ * @property {object} payload - Command payload
+ */
+
+/**
+ * Switch UI layout — control which panels are visible
+ * @param {string[]} panels - Panel names to show
+ * @param {string} [split='horizontal'] - Split direction
+ * @returns {UICommand}
+ */
+export function layout(panels, split = 'horizontal') {
+  return { type: 'ui:layout', payload: { panels, split } };
+}
+
+/**
+ * Focus on a specific panel or node
+ * @param {string} panel - Panel name to focus
+ * @param {string} [nodeId] - Optional node to zoom to
+ * @returns {UICommand}
+ */
+export function focus(panel, nodeId) {
+  return { type: 'ui:focus', payload: { panel, nodeId } };
+}
+
+/**
+ * Select nodes on canvas
+ * @param {string[]} nodeIds - Node IDs to select
+ * @returns {UICommand}
+ */
+export function select(nodeIds) {
+  return { type: 'ui:select', payload: { nodeIds } };
+}
+
+/**
+ * Navigate into a compound node
+ * @param {string} compoundId - Compound node ID to enter
+ * @returns {UICommand}
+ */
+export function navigate(compoundId) {
+  return { type: 'ui:navigate', payload: { compoundId } };
+}
+
+/**
+ * Control timeline playback
+ * @param {'play'|'stop'|'seek'} action - Playback action
+ * @param {number} [frame] - Frame to seek to (for 'seek' action)
+ * @returns {UICommand}
+ */
+export function playback(action, frame) {
+  const payload = { action };
+  if (frame !== undefined) payload.frame = frame;
+  return { type: 'ui:playback', payload };
+}
+
+/**
+ * Show notification to user
+ * @param {string} message - Notification text
+ * @param {'info'|'success'|'warning'|'error'} [type='info'] - Notification type
+ * @returns {UICommand}
+ */
+export function notify(message, type = 'info') {
+  return { type: 'ui:notify', payload: { message, type } };
+}
+
+/**
+ * Move virtual agent cursor on canvas
+ * @param {number} x - X position
+ * @param {number} y - Y position
+ * @param {string} [label] - Cursor label text
+ * @returns {UICommand}
+ */
+export function cursor(x, y, label) {
+  const payload = { x, y };
+  if (label) payload.label = label;
+  return { type: 'ui:cursor', payload };
+}
+
+/**
+ * All command types for reference
+ */
+export const COMMAND_TYPES = [
+  'ui:layout',
+  'ui:focus',
+  'ui:select',
+  'ui:navigate',
+  'ui:playback',
+  'ui:notify',
+  'ui:cursor',
+];

package/vendor/symbiote-node/engine/Executor.js

@@ -0,0 +1,371 @@
+/**
+ * Executor.js - Topological sort execution engine
+ *
+ * Executes a directed acyclic graph (DAG) of nodes using
+ * Kahn's algorithm. Supports incremental execution,
+ * cache, async node processing, dynamic sockets,
+ * and compound node sub-graph execution.
+ *
+ * @module symbiote-node/Executor
+ */
+
+import { getNodeType } from './Registry.js';
+import { Graph } from './Graph.js';
+import { runLifecycle } from './Lifecycle.js';
+
+export class Executor {
+
+  constructor() {
+    /** @type {Map<string, any>} Cached outputs per node ID */
+    this._cache = new Map();
+
+    /** @type {Map<string, {key: string, outputs: object}>} Lifecycle cache store */
+    this._lifecycleCache = new Map();
+
+    /** @type {Set<string>} Nodes marked dirty (need re-execution) */
+    this._dirty = new Set();
+
+    /** @type {string|null} Currently executing node ID */
+    this.currentNode = null;
+
+    /** @type {Array<{nodeId: string, time: number, skipped: boolean, cached?: boolean, error?: string|null}>} */
+    this.executionLog = [];
+  }
+
+  /**
+   * Execute a graph
+   * @param {import('./Graph.js').Graph} graph
+   * @param {object} [options={}]
+   * @param {boolean} [options.cache=false] - Use incremental execution (skip unchanged)
+   * @param {function} [options.onNodeStart] - Callback(nodeId, node)
+   * @param {function} [options.onNodeComplete] - Callback(nodeId, output, timeMs)
+   * @param {function} [options.onNodeSkipped] - Callback(nodeId) for cached nodes
+   * @param {function} [options.onNodeCached] - Callback(nodeId, cacheHash) for lifecycle-cached
+   * @returns {Promise<{outputs: object, executionOrder: string[], log: Array, totalTime: number}>}
+   */
+  async run(graph, options = {}) {
+    const { cache = false, onNodeStart, onNodeComplete, onNodeSkipped, onNodeCached } = options;
+    const nodes = graph.nodes;
+    // Duck-typing: Editor has connections as Map, Graph has array
+    const connections = graph.connections instanceof Map
+      ? [...graph.connections.values()]
+      : graph.connections;
+
+    // Topological sort
+    const order = this._topologicalSort(nodes, connections);
+
+    // Execute in order
+    const results = new Map();
+    this.executionLog = [];
+
+    for (const nodeId of order) {
+      const node = nodes.get(nodeId);
+
+      // Skip cached clean nodes
+      if (cache && !this._dirty.has(nodeId) && this._cache.has(nodeId)) {
+        results.set(nodeId, this._cache.get(nodeId));
+        this.executionLog.push({ nodeId, time: 0, skipped: true });
+        if (onNodeSkipped) onNodeSkipped(nodeId);
+        continue;
+      }
+
+      if (onNodeStart) onNodeStart(nodeId, node);
+      this.currentNode = nodeId;
+      const startTime = performance.now();
+
+      // Resolve inputs from upstream connections
+      const inputs = this._resolveInputs(nodeId, connections, results);
+
+      // P22: Branch skipping — if node has incoming connections and
+      // all connected inputs are null, this node is on an inactive branch
+      const incomingConns = connections.filter(c => c.to === nodeId);
+      if (incomingConns.length > 0) {
+        const allNull = incomingConns.every(c => inputs[c.in] === null || inputs[c.in] === undefined);
+        // Skip merge nodes — they expect null from one branch
+        const isMergeType = node.type === 'flow/merge' || node.type === 'flow/wait-all';
+        if (allNull && !isMergeType) {
+          node._output = null;
+          results.set(nodeId, null);
+          const elapsed = performance.now() - startTime;
+          this.executionLog.push({ nodeId, time: elapsed, skipped: true, branchSkipped: true });
+          if (onNodeSkipped) onNodeSkipped(nodeId);
+          continue;
+        }
+      }
+
+      // Execute node processor
+      // Check for lifecycle hooks first, then fall back to process()
+      let output;
+      const typeDef = getNodeType(node.type);
+      const lifecycleHooks = typeDef?.lifecycle;
+
+      if (lifecycleHooks) {
+        // Lifecycle path: validate → cache → execute → postProcess
+        const cacheState = {
+          mode: node.cacheMode || 'auto',
+          store: this._lifecycleCache,
+          nodeId,
+        };
+
+        const lifecycleResult = await runLifecycle(lifecycleHooks, inputs, node.params, cacheState);
+
+        if (lifecycleResult.error) {
+          node._output = { _error: lifecycleResult.error };
+          node._cacheHash = lifecycleResult.cacheHash;
+          results.set(nodeId, node._output);
+          const elapsed = performance.now() - startTime;
+          this.executionLog.push({ nodeId, time: elapsed, skipped: false, cached: false, error: lifecycleResult.error });
+          if (onNodeComplete) onNodeComplete(nodeId, node._output, elapsed);
+          continue;
+        }
+
+        output = lifecycleResult.outputs;
+        node._cacheHash = lifecycleResult.cacheHash;
+
+        if (lifecycleResult.cached) {
+          if (onNodeCached) onNodeCached(nodeId, lifecycleResult.cacheHash);
+        }
+      } else {
+        // Legacy path: direct process() call
+        // Node-level process overrides type-level (for per-instance composition)
+        const processFn = node.process || typeDef?.process;
+
+        if (typeof processFn === 'function') {
+          output = await processFn(inputs, node.params);
+        } else {
+          // Passthrough: merge params with inputs
+          output = { ...node.params, ...inputs };
+        }
+      }
+
+      // Compound node: execute sub-graph if returned
+      if (output && output._subGraph) {
+        output = await this._executeSubGraph(output._subGraph, inputs, node.params);
+      }
+
+      // Dynamic sockets: process exposes runtime-generated outputs
+      if (output && output.dynamicOutputs && Array.isArray(output.dynamicOutputs)) {
+        node._dynamicSockets = output.dynamicOutputs;
+      }
+
+      // Store output in node
+      node._output = output;
+
+      results.set(nodeId, output);
+      this._cache.set(nodeId, output);
+      this._dirty.delete(nodeId);
+
+      const elapsed = performance.now() - startTime;
+      this.executionLog.push({ nodeId, time: elapsed, skipped: false });
+
+      if (onNodeComplete) onNodeComplete(nodeId, output, elapsed);
+    }
+
+    this.currentNode = null;
+
+    // Collect output nodes (no outgoing connections)
+    const outputNodeIds = this._findOutputNodes(nodes, connections);
+    const outputs = {};
+    for (const id of outputNodeIds) {
+      outputs[id] = results.get(id);
+    }
+
+    return {
+      outputs,
+      executionOrder: order,
+      log: this.executionLog,
+      totalTime: this.executionLog.reduce((sum, e) => sum + e.time, 0),
+    };
+  }
+
+  /**
+   * Mark a node as dirty (needs re-execution)
+   * Propagates downstream
+   * @param {string} nodeId
+   * @param {import('./Graph.js').Connection[]} connections
+   */
+  markDirty(nodeId, connections) {
+    if (this._dirty.has(nodeId)) return;
+    this._dirty.add(nodeId);
+    for (const conn of connections) {
+      if (conn.from === nodeId) {
+        this.markDirty(conn.to, connections);
+      }
+    }
+  }
+
+  /**
+   * Clear all caches
+   */
+  clearCache() {
+    this._cache.clear();
+    this._lifecycleCache.clear();
+    this._dirty.clear();
+  }
+
+  /**
+   * Topological sort using Kahn's algorithm
+   * @param {Map<string, object>} nodes
+   * @param {Array<{from: string, to: string}>} connections
+   * @returns {string[]} Node IDs in execution order
+   * @private
+   */
+  _topologicalSort(nodes, connections) {
+    const inDegree = new Map();
+    const adjacency = new Map();
+
+    // Only include connected nodes (skip orphans)
+    const connectedIds = new Set();
+    for (const conn of connections) {
+      connectedIds.add(conn.from);
+      connectedIds.add(conn.to);
+    }
+
+    // Include source nodes (no incoming connections but exist in graph)
+    for (const id of nodes.keys()) {
+      if (connectedIds.has(id) || !connections.some(c => c.to === id || c.from === id)) {
+        // Include connected nodes; orphans are skipped
+      }
+    }
+
+    for (const id of connectedIds) {
+      if (!nodes.has(id)) continue;
+      inDegree.set(id, 0);
+      adjacency.set(id, []);
+    }
+
+    // Also include source nodes (nodes with outgoing but no incoming)
+    for (const id of nodes.keys()) {
+      if (!connectedIds.has(id)) continue;
+      if (!inDegree.has(id)) {
+        inDegree.set(id, 0);
+        adjacency.set(id, []);
+      }
+    }
+
+    for (const conn of connections) {
+      if (!adjacency.has(conn.from) || !inDegree.has(conn.to)) continue;
+      adjacency.get(conn.from).push(conn.to);
+      inDegree.set(conn.to, (inDegree.get(conn.to) || 0) + 1);
+    }
+
+    // Kahn's algorithm
+    const queue = [];
+    for (const [id, degree] of inDegree) {
+      if (degree === 0) queue.push(id);
+    }
+
+    const result = [];
+    while (queue.length > 0) {
+      const nodeId = queue.shift();
+      result.push(nodeId);
+      for (const neighbor of (adjacency.get(nodeId) || [])) {
+        const nd = inDegree.get(neighbor) - 1;
+        inDegree.set(neighbor, nd);
+        if (nd === 0) queue.push(neighbor);
+      }
+    }
+
+    // Cycle detection
+    const connectedCount = inDegree.size;
+    if (result.length < connectedCount) {
+      const remaining = [...inDegree.keys()].filter(id => !result.includes(id));
+      throw new Error(`Graph contains cycle(s). Nodes involved: ${remaining.join(', ')}`);
+    }
+
+    return result;
+  }
+
+  /**
+   * Resolve inputs for a node from upstream connections
+   * @param {string} nodeId
+   * @param {Array<{from: string, out: string, to: string, in: string}>} connections
+   * @param {Map<string, any>} results
+   * @returns {object}
+   * @private
+   */
+  _resolveInputs(nodeId, connections, results) {
+    const inputs = {};
+    for (const conn of connections) {
+      if (conn.to !== nodeId) continue;
+      const upstream = results.get(conn.from);
+      if (upstream === undefined) continue;
+
+      let value;
+      if (upstream && typeof upstream === 'object' && conn.out in upstream) {
+        value = upstream[conn.out];
+      } else if (upstream && typeof upstream === 'object' && upstream.dynamicOutputs) {
+        // Dynamic routing node (switch): missing key = inactive branch
+        value = null;
+      } else {
+        value = upstream;
+      }
+
+      // Multiple connections to same input: first non-null wins
+      if (inputs[conn.in] !== undefined && inputs[conn.in] !== null) continue;
+      inputs[conn.in] = value;
+    }
+    return inputs;
+  }
+
+  /**
+   * Find output nodes (no outgoing connections)
+   * @param {Map<string, object>} nodes
+   * @param {Array<{from: string}>} connections
+   * @returns {string[]}
+   * @private
+   */
+  _findOutputNodes(nodes, connections) {
+    const hasOutgoing = new Set();
+    for (const conn of connections) {
+      hasOutgoing.add(conn.from);
+    }
+    const connected = new Set();
+    for (const conn of connections) {
+      connected.add(conn.from);
+      connected.add(conn.to);
+    }
+    return [...connected].filter(id => !hasOutgoing.has(id) && nodes.has(id));
+  }
+
+  /**
+   * Execute a compound node's sub-graph
+   * @param {object} subGraphData - Sub-graph JSON definition
+   * @param {object} parentInputs - Inputs from parent graph
+   * @param {object} parentParams - Parent node params
+   * @returns {Promise<object>} Merged outputs from sub-graph output nodes
+   * @private
+   */
+  async _executeSubGraph(subGraphData, parentInputs, parentParams) {
+    const subGraph = new Graph(subGraphData);
+
+    // Inject parent inputs into sub-graph input nodes
+    for (const node of subGraph.nodes.values()) {
+      if (node.type === 'compound/input') {
+        const injectedOutput = { ...parentInputs, ...parentParams };
+        node._output = injectedOutput;
+        node.process = () => injectedOutput;
+      }
+    }
+
+    // Execute sub-graph with a fresh executor
+    const subExecutor = new Executor();
+    const result = await subExecutor.run(subGraph);
+
+    // Merge all output node results
+    const merged = {};
+    for (const [id, output] of Object.entries(result.outputs)) {
+      const node = subGraph.getNode(id);
+      if (node.type === 'compound/output' && output) {
+        Object.assign(merged, output);
+      }
+    }
+
+    // Include dynamic socket info if sub-graph produces segments
+    if (Object.keys(merged).length > 0) {
+      merged.dynamicOutputs = Object.keys(merged);
+    }
+
+    return merged;
+  }
+}