project-graph-mcp 2.2.6 → 2.3.0

package/web/panels/dep-graph.js

@@ -1,7 +1,2712 @@
-// @ctx .context/web/panels/dep-graph.ctx
-import s from"@symbiotejs/symbiote";import{api as e,state as p,events as n,emit as t}from"../app.js";
-export class DepGraph extends s{init$={contentHTML:'<div class="pg-placeholder">Select a file to see dependencies</div>'};initCallback(){n.addEventListener("file-selected",s=>this._loadDeps(s.detail.path)),n.addEventListener("skeleton-loaded",()=>this._renderOverview()),p.skeleton&&this._renderOverview(),this.addEventListener("click",s=>{const e=s.target.closest("[data-file]");if(e){const s=e.dataset.file;p.activeFile=s,t("file-selected",{path:s})}})}_renderOverview(){if(!p.skeleton)return;
-const s=p.skeleton.s||{},e=p.skeleton.X||{},n=(Object.values(p.skeleton.n||{}),['<div class="pg-graph-stats">']),t=s.files||Object.keys(e).length,a=s.functions||0,i=s.classes||0,o=Object.values(e).reduce((s,e)=>s+e.length,0);n.push(`<div class="pg-stat"><span class="pg-stat-val">${t}</span><span class="pg-stat-label">Files</span></div>`),n.push(`<div class="pg-stat"><span class="pg-stat-val">${a}</span><span class="pg-stat-label">Functions</span></div>`),n.push(`<div class="pg-stat"><span class="pg-stat-val">${i}</span><span class="pg-stat-label">Classes</span></div>`),n.push(`<div class="pg-stat"><span class="pg-stat-val">${o}</span><span class="pg-stat-label">Exports</span></div>`),n.push("</div>");
-const l=[];for(const[s,p]of Object.entries(e))l.push({file:s,exports:p.length});l.sort((s,e)=>e.exports-s.exports),n.push('<div class="pg-dep-section"><div class="pg-dep-label">Most Exported</div>');for(const s of l.slice(0,10))n.push(`<div class="pg-dep-item pg-dep-nav" data-file="${s.file}">\n        <span class="pg-dep-file">${s.file}</span>\n        <span class="pg-dep-badge">${s.exports} exports</span>\n      </div>`);n.push("</div>"),this.$.contentHTML=n.join("")}async _loadDeps(s){this.$.contentHTML='<div class="pg-placeholder pg-pulse">Loading dependencies...</div>';try{const e=Object.values(p.skeleton?.n||{}).find(e=>e.f===s);if(!e)return void(this.$.contentHTML='<div class="pg-placeholder">File not in graph</div>');
-const n=[];if(n.push(`<h3 class="pg-dep-title">${s}</h3>`),e.i?.length){n.push('<div class="pg-dep-section"><div class="pg-dep-label">Imports</div>');for(const s of e.i){const e=s.s||s,t=Object.values(p.skeleton.n).find(s=>s.f===e||s.f?.endsWith("/"+e)||s.f?.endsWith(e+".js"));t?n.push(`<div class="pg-dep-item pg-dep-nav pg-dep-import" data-file="${t.f}">\n              <span class="material-symbols-outlined" style="font-size:14px">arrow_back</span>\n              ${e}\n            </div>`):n.push(`<div class="pg-dep-item pg-dep-import">\n              <span class="material-symbols-outlined" style="font-size:14px">arrow_back</span>\n              ${e}\n              <span class="pg-dep-ext">external</span>\n            </div>`)}n.push("</div>")}const t=[];for(const e of Object.values(p.skeleton?.n||{})){if(e.f===s)continue;
-const p=e.i||[];for(const n of p){const p=n.s||n;if(p===s||s.endsWith(p)||s.endsWith(p+".js")){t.push(e.f);break}}}if(t.length){n.push('<div class="pg-dep-section"><div class="pg-dep-label">Imported By</div>');for(const s of t)n.push(`<div class="pg-dep-item pg-dep-nav pg-dep-importer" data-file="${s}">\n            <span class="material-symbols-outlined" style="font-size:14px">arrow_forward</span>\n            ${s}\n          </div>`);n.push("</div>")}if(e.e?.length){n.push('<div class="pg-dep-section"><div class="pg-dep-label">Exports</div>');for(const s of e.e)n.push(`<div class="pg-dep-item pg-dep-export">→ ${s}</div>`);n.push("</div>")}if(e.fn?.length){n.push('<div class="pg-dep-section"><div class="pg-dep-label">Functions</div>');for(const s of e.fn){const e=s.n||s,p=s.p?`(${s.p})`:"()";n.push(`<div class="pg-dep-item pg-dep-fn">ƒ ${e}${p}</div>`)}n.push("</div>")}if(e.c?.length){n.push('<div class="pg-dep-section"><div class="pg-dep-label">Classes</div>');for(const s of e.c){const e=s.n||s,p=s.x?` extends ${s.x}`:"",t=s.m?.map(s=>s.n||s).join(", ")||"";n.push(`<div class="pg-dep-item pg-dep-class">◆ ${e}${p}</div>`),t&&n.push(`<div class="pg-dep-item pg-dep-methods">&nbsp;&nbsp;methods: ${t}</div>`)}n.push("</div>")}this.$.contentHTML=n.join("")}catch(s){this.$.contentHTML=`<div class="pg-placeholder" style="color:var(--sn-danger-color)">Error: ${s.message}</div>`}}}DepGraph.template='<div class="pg-graph-body" bind="innerHTML: contentHTML"></div>',DepGraph.rootStyles="\n  pg-dep-graph { display:block; height:100%; overflow-y:auto; padding:12px; font-size:12px; font-family:var(--sn-font, Georgia, serif); }\n  .pg-graph-stats { display:flex; gap:8px; margin-bottom:16px; flex-wrap:wrap; }\n  .pg-stat {\n    background: var(--sn-node-bg, hsl(40, 33%, 96%));\n    border: 1px solid var(--sn-node-border, hsl(35, 18%, 80%));\n    border-radius: 6px;\n    padding: 10px 14px;\n    text-align: center;\n    flex: 1;\n    min-width: 60px;\n  }\n  .pg-stat-val { display:block; font-size:22px; font-weight:700; color:var(--sn-cat-server, hsl(210, 45%, 45%)); font-family:monospace; }\n  .pg-stat-label { font-size:9px; text-transform:uppercase; color:var(--sn-text-dim); letter-spacing:0.5px; }\n  .pg-dep-title { font-size:13px; color:var(--sn-text); margin:0 0 12px 0; font-family:monospace; }\n  .pg-dep-section { margin-bottom:12px; }\n  .pg-dep-label { font-size:10px; text-transform:uppercase; letter-spacing:0.5px; color:var(--sn-text-dim); margin-bottom:4px; font-weight:600; }\n  .pg-dep-item {\n    padding: 4px 8px;\n    border-radius: 4px;\n    font-family: 'SF Mono', 'Fira Code', monospace;\n    font-size: 11px;\n    display: flex;\n    align-items: center;\n    gap: 6px;\n  }\n  .pg-dep-nav {\n    cursor: pointer;\n    transition: background 120ms ease;\n  }\n  .pg-dep-nav:hover {\n    background: var(--sn-node-hover, hsl(36, 22%, 88%));\n  }\n  .pg-dep-import { color: hsl(210, 45%, 45%); }\n  .pg-dep-importer { color: hsl(30, 55%, 50%); }\n  .pg-dep-export { color: hsl(150, 40%, 38%); }\n  .pg-dep-fn { color: hsl(250, 35%, 50%); }\n  .pg-dep-class { color: hsl(330, 40%, 50%); }\n  .pg-dep-methods { color: var(--sn-text-dim); font-size:10px; }\n  .pg-dep-ext {\n    font-size: 9px;\n    text-transform: uppercase;\n    letter-spacing: 0.5px;\n    opacity: 0.5;\n    margin-left: auto;\n  }\n  .pg-dep-file { flex:1; min-width:0; overflow:hidden; text-overflow:ellipsis; white-space:nowrap; }\n  .pg-dep-badge {\n    font-size: 10px;\n    color: var(--sn-text-dim);\n    white-space: nowrap;\n  }\n  .pg-placeholder { color:var(--sn-text-dim); text-align:center; padding:30px; font-style:italic; }\n  .pg-pulse { animation:pulse 1.5s ease infinite; }\n  @keyframes pulse { 0%,100%{opacity:1} 50%{opacity:0.4} }\n",DepGraph.reg("pg-dep-graph");
+/**
+ * dep-graph.js — Visual Project Graph (PCB Board Style)
+ *
+ * Renders the project dependency graph as an interactive
+ * node-canvas visualization styled like a printed circuit board.
+ * Uses symbiote-node's NodeCanvas with orthogonal routing,
+ * readonly mode, and auto-layout.
+ *
+ * Phase 1: File-level graph (each file = node, imports = traces).
+ */
+import Symbiote from '@symbiotejs/symbiote';
+import {
+  NodeEditor,
+  Node,
+  SubgraphNode,
+  Connection,
+  Socket,
+  Input,
+  Output,
+  NodeCanvas,
+  Frame,
+  computeAutoLayout,
+  computeTreeLayout,
+  applyTheme,
+  SubgraphRouter,
+  LODManager,
+  PinExpansion,
+  ForceLayout,
+  PCB_DARK,
+} from 'symbiote-node';
+import { api, state, events, emit } from '../app.js';
+
+// ── Socket types (for wire coloring) ──
+const S_IMPORT = new Socket('import');
+S_IMPORT.color = '#c87533';   // copper
+const S_EXPORT = new Socket('export');
+S_EXPORT.color = '#d4a04a';   // gold
+
+/**
+ * Extract directory from file path
+ * @param {string} filePath
+ * @returns {string}
+ */
+function dirOf(filePath) {
+  if (!filePath) return './';
+  const idx = filePath.lastIndexOf('/');
+  return idx >= 0 ? filePath.slice(0, idx + 1) : './';
+}
+
+/**
+ * Short filename for node label
+ * @param {string} filePath
+ * @returns {string}
+ */
+function baseName(filePath) {
+  if (!filePath) return '?';
+  const idx = filePath.lastIndexOf('/');
+  return idx >= 0 ? filePath.slice(idx + 1) : filePath;
+}
+
+
+
+/**
+ * Resolve import path to a known file
+ * @param {string} importPath
+ * @param {string} fromFile
+ * @param {Set<string>} knownFiles
+ * @returns {string|null}
+ */
+function resolveImport(importPath, fromFile, knownFiles) {
+  // Direct match
+  if (knownFiles.has(importPath)) return importPath;
+
+  // Try with .js extension
+  if (knownFiles.has(importPath + '.js')) return importPath + '.js';
+
+  // Relative resolution
+  if (importPath.startsWith('.')) {
+    const dir = dirOf(fromFile);
+    let resolved = dir + importPath.replace(/^\.\//, '');
+    // Normalize ../ segments
+    const parts = resolved.split('/');
+    const normalized = [];
+    for (const part of parts) {
+      if (part === '..') normalized.pop();
+      else if (part !== '.') normalized.push(part);
+    }
+    resolved = normalized.join('/');
+
+    if (knownFiles.has(resolved)) return resolved;
+    if (knownFiles.has(resolved + '.js')) return resolved + '.js';
+    // Try index
+    if (knownFiles.has(resolved + '/index.js')) return resolved + '/index.js';
+  }
+
+  // Module name match via pre-built index — O(1) instead of O(N)
+  const base = importPath.split('/').pop();
+  const idx = buildBasenameIndex(knownFiles);
+  return idx.get(base) || idx.get(base.replace(/\.js$/, '')) || null;
+}
+
+let _basenameIndex = null;
+let _indexedSet = null;
+function buildBasenameIndex(knownFiles) {
+  if (_indexedSet === knownFiles) return _basenameIndex;
+  _indexedSet = knownFiles;
+  _basenameIndex = new Map();
+  for (const file of knownFiles) {
+    const base = file.split('/').pop();
+    _basenameIndex.set(base, file);
+    if (!base.endsWith('.js')) {
+      _basenameIndex.set(base + '.js', file);
+    }
+  }
+  return _basenameIndex;
+}
+
+/**
+ * Build a hierarchical SubgraphNode graph:
+ *   Level 0: directories (SubgraphNode)
+ *   Level 1: files inside directories (SubgraphNode or Node)
+ *   Level 2: functions/exports inside files (Node)
+ *
+ * @param {object} skeleton
+ * @returns {{ editor: NodeEditor, fileMap: Map<string, string> }}
+ */
+function buildStructuredGraph(skeleton) {
+  const editor = new NodeEditor();
+  const fileMap = new Map();
+  const symbolMap = new Map();
+  const L = skeleton.L || {}; // legend: abbreviation → full name
+  const N = skeleton.n || {}; // classes: className → { f, m, ... }
+
+  // Build class-name set for classification
+  const classNames = new Set(Object.keys(N));
+  // Map file → set of class names defined in it
+  const fileClasses = new Map();
+  for (const [className, data] of Object.entries(N)) {
+    if (data.f) {
+      if (!fileClasses.has(data.f)) fileClasses.set(data.f, new Set());
+      fileClasses.get(data.f).add(className);
+    }
+  }
+
+  // Collect all files
+  const files = new Set();
+  const assetFiles = new Set();
+  for (const data of Object.values(N)) {
+    if (data.f) files.add(data.f);
+  }
+  for (const file of Object.keys(skeleton.X || {})) {
+    files.add(file);
+  }
+  for (const [dir, names] of Object.entries(skeleton.f || {})) {
+    for (const name of names) {
+      files.add(dir === './' ? name : dir + name);
+    }
+  }
+  // Non-source/asset files (.css, .html, .json, .md, etc.)
+  for (const [dir, names] of Object.entries(skeleton.a || {})) {
+    for (const name of names) {
+      const fullPath = dir === './' ? name : dir + name;
+      files.add(fullPath);
+      assetFiles.add(fullPath);
+    }
+  }
+
+  if (files.size === 0) return { editor, fileMap };
+
+  // Group files by directory
+  const dirFiles = new Map();
+  for (const file of files) {
+    const dir = dirOf(file);
+    if (!dirFiles.has(dir)) dirFiles.set(dir, []);
+    dirFiles.get(dir).push(file);
+  }
+
+  /**
+   * Classify a file based on its content and name
+   * @param {string} file
+   * @returns {string} category
+   */
+  function classifyFile(file) {
+    if (assetFiles.has(file)) return 'asset';
+    const name = baseName(file).toLowerCase();
+    const classes = fileClasses.get(file);
+    if (classes && classes.size > 0) return 'class';
+    if (name === 'index.js' || name === 'index.mjs') return 'module';
+    if (name.includes('test') || name.includes('spec')) return 'control';
+    if (name.includes('config') || name.includes('.json')) return 'data';
+    return 'file';
+  }
+
+  /**
+   * Resolve export abbreviation to full name
+   * @param {string} abbr
+   * @returns {string}
+   */
+  function resolveName(abbr) {
+    return L[abbr] || abbr;
+  }
+
+  // ── Phase 1: Create all Directory SubgraphNodes (without nesting yet) ──
+  const dirNodeMap = new Map();    // dirPath → nodeId
+  const dirSubgraphs = new Map();  // dirPath → SubgraphNode instance
+
+  // Sort directories by depth (shortest first) so parents are created before children
+  const sortedDirs = [...dirFiles.keys()].sort((a, b) => {
+    const dA = a.split('/').filter(Boolean).length;
+    const dB = b.split('/').filter(Boolean).length;
+    return dA - dB || a.localeCompare(b);
+  });
+
+  for (const dir of sortedDirs) {
+    const dirFileList = dirFiles.get(dir);
+
+    // Root directory './' is NOT a node — its contents go directly into the root editor
+    const isRoot = (dir === './');
+    const targetEditor = isRoot ? editor : null;
+
+    let dirSubgraph = null;
+    let innerEditor;
+
+    if (isRoot) {
+      innerEditor = editor;
+    } else {
+      const dirLabel = dir.replace(/\/$/, '').split('/').pop() || 'root';
+      dirSubgraph = new SubgraphNode(dirLabel, {
+        category: 'directory',
+      });
+      dirSubgraph.params = { path: dir, isDirectory: true };
+      dirSubgraph.addOutput('out', new Output(S_EXPORT, ''));
+      dirSubgraph.addInput('in', new Input(S_IMPORT, ''));
+      innerEditor = dirSubgraph.getInnerEditor();
+    }
+
+    // ── File nodes inside this directory ──
+    for (const file of dirFileList) {
+      const fileLabel = baseName(file);
+      const exports = skeleton.X?.[file] || [];
+      const fileCategory = classifyFile(file);
+      const classes = fileClasses.get(file);
+
+      let fileNode;
+      if (exports.length > 0) {
+        fileNode = new SubgraphNode(fileLabel, {
+          category: fileCategory,
+        });
+        fileNode.params = { path: file, dir, calculatedHeight: 60 + exports.length * 50 };
+
+        const fileInnerEditor = fileNode.getInnerEditor();
+        for (const abbr of exports) {
+          const abbrId = typeof abbr === 'object' ? abbr.id : abbr;
+          const fullName = resolveName(abbrId);
+          const isClass = classes && classes.has(fullName);
+          const fnNode = new Node(fullName, {
+            type: isClass ? 'class' : 'function',
+            category: isClass ? 'class' : 'function',
+          });
+          fnNode.params = { name: fullName, file };
+          symbolMap.set(fnNode.id, fnNode.params);
+          fileInnerEditor.addNode(fnNode);
+        }
+      } else {
+        fileNode = new Node(fileLabel, {
+          type: 'file',
+          category: fileCategory,
+        });
+        fileNode.params = { path: file, dir };
+      }
+
+      fileNode.addOutput('out', new Output(S_EXPORT, ''));
+      fileNode.addInput('in', new Input(S_IMPORT, ''));
+
+      innerEditor.addNode(fileNode);
+      fileMap.set(file, fileNode.id);
+    }
+
+    // ── File-level import edges within this directory ──
+    const edgesAdded = new Set();
+    for (const [srcFile, sources] of Object.entries(skeleton.I || {})) {
+      const srcId = fileMap.get(srcFile);
+      if (!srcId) continue;
+      const srcDir = dirOf(srcFile);
+      if (srcDir !== dir) continue;
+
+      for (const impPath of sources) {
+        if (impPath.startsWith('node:') || (!impPath.startsWith('.') && !impPath.startsWith('/'))) continue;
+        const targetFile = resolveImport(impPath, srcFile, files);
+        if (!targetFile) continue;
+
+        const tgtId = fileMap.get(targetFile);
+        if (!tgtId || tgtId === srcId) continue;
+        if (dirOf(targetFile) !== dir) continue;
+
+        const edgeKey = `${srcId}->${tgtId}`;
+        if (edgesAdded.has(edgeKey)) continue;
+        edgesAdded.add(edgeKey);
+
+        const srcNode = innerEditor.getNode(srcId);
+        const tgtNode = innerEditor.getNode(tgtId);
+        if (srcNode && tgtNode) {
+          try {
+            innerEditor.addConnection(new Connection(srcNode, 'out', tgtNode, 'in'));
+          } catch { /* skip */ }
+        }
+      }
+    }
+
+    if (dirSubgraph) {
+      dirSubgraphs.set(dir, dirSubgraph);
+      dirNodeMap.set(dir, dirSubgraph.id);
+    }
+  }
+
+  // ── Phase 2: Nest child directories inside parent directories ──
+  // Root './' is not a node, so its children go directly into root editor.
+  for (const dir of sortedDirs) {
+    if (dir === './') continue; // root dir contents already in root editor
+    const dirSubgraph = dirSubgraphs.get(dir);
+    if (!dirSubgraph) continue;
+    
+    // Find parent directory
+    const segments = dir.replace(/\/$/, '').split('/');
+    segments.pop();
+    
+    let parentDir = null;
+    while (segments.length > 0) {
+      const candidate = segments.join('/') + '/';
+      if (dirSubgraphs.has(candidate)) {
+        parentDir = candidate;
+        break;
+      }
+      segments.pop();
+    }
+    
+    if (parentDir) {
+      // Nest inside parent's inner editor
+      const parentSubgraph = dirSubgraphs.get(parentDir);
+      parentSubgraph.getInnerEditor().addNode(dirSubgraph);
+    } else {
+      // No parent (or parent is './') → add to root editor
+      editor.addNode(dirSubgraph);
+    }
+  }
+
+  // ── Cross-directory edges ──
+  // Edges between directories that share the same parent go into that parent's inner editor.
+  // Edges between top-level directories go into the root editor.
+  const crossEdges = new Set();
+  for (const [srcFile, sources] of Object.entries(skeleton.I || {})) {
+    const srcDir = dirOf(srcFile);
+    const srcDirId = dirNodeMap.get(srcDir);
+    if (!srcDirId) continue;
+
+    for (const impPath of sources) {
+      if (impPath.startsWith('node:') || (!impPath.startsWith('.') && !impPath.startsWith('/'))) continue;
+      const targetFile = resolveImport(impPath, srcFile, files);
+      if (!targetFile) continue;
+
+      const tgtDir = dirOf(targetFile);
+      if (tgtDir === srcDir) continue;
+
+      const tgtDirId = dirNodeMap.get(tgtDir);
+      if (!tgtDirId || tgtDirId === srcDirId) continue;
+
+      const edgeKey = `${srcDirId}->${tgtDirId}`;
+      if (crossEdges.has(edgeKey)) continue;
+      crossEdges.add(edgeKey);
+
+      // Find the common parent editor that contains BOTH directory nodes
+      // Walk up both paths to find shared ancestor
+      const srcSegments = srcDir.replace(/\/$/, '').split('/');
+      const tgtSegments = tgtDir.replace(/\/$/, '').split('/');
+      
+      // Find common prefix 
+      let commonLen = 0;
+      while (commonLen < srcSegments.length && commonLen < tgtSegments.length &&
+             srcSegments[commonLen] === tgtSegments[commonLen]) {
+        commonLen++;
+      }
+      const commonPath = commonLen > 0 ? srcSegments.slice(0, commonLen).join('/') + '/' : null;
+      
+      // The editor that holds both nodes is the common parent's inner editor,
+      // or the root editor if they share no parent.
+      let targetEditor = editor; // default: root editor
+      if (commonPath && dirSubgraphs.has(commonPath)) {
+        targetEditor = dirSubgraphs.get(commonPath).getInnerEditor();
+      }
+
+      const srcNode = targetEditor.getNode(srcDirId);
+      const tgtNode = targetEditor.getNode(tgtDirId);
+      if (srcNode && tgtNode) {
+        try {
+          targetEditor.addConnection(new Connection(srcNode, 'out', tgtNode, 'in'));
+        } catch { /* skip */ }
+      }
+    }
+  }
+
+  // ── Pre-compute inner positions for drill-down (recursive) ──
+  const symbolNodes = []; // Track internal symbol nodes for idToPath linking
+
+  function computeInnerPositions(subgraph) {
+    if (!subgraph._isSubgraph) return;
+    const inner = subgraph.getInnerEditor();
+    const innerPos = computeAutoLayout(inner, { nodeHeight: 80, gapY: 100 });
+    subgraph.setInnerPositions(innerPos);
+
+    let minX = 0, maxX = 260;
+    let minY = 0, maxY = 60;
+    
+    for (const pos of Object.values(innerPos)) {
+      if (pos.x < minX) minX = pos.x;
+      if (pos.x + 260 > maxX) maxX = pos.x + 260;
+      if (pos.y < minY) minY = pos.y;
+      if (pos.y + 60 > maxY) maxY = pos.y + 60;
+    }
+
+    subgraph.params = subgraph.params || {};
+    subgraph.params.calculatedWidth = maxX - minX + 60;
+    subgraph.params.calculatedHeight = maxY - minY + 100;
+
+    for (const childNode of inner.getNodes()) {
+      if (childNode._isSubgraph) {
+        computeInnerPositions(childNode);
+        // If it's a file node (has params.path and no isDirectory), collect symbols
+        if (childNode.params?.path && !childNode.params?.isDirectory) {
+          const fileInner = childNode.getInnerEditor();
+          for (const fnNode of fileInner.getNodes()) {
+            symbolNodes.push({ id: fnNode.id, file: childNode.params.path });
+          }
+        }
+      }
+    }
+  }
+
+  for (const rootNode of editor.getNodes()) {
+    computeInnerPositions(rootNode);
+  }
+
+  // ── Build Reverse ID Lookup ──
+  const idToPath = new Map();
+  for (const [path, id] of fileMap.entries()) idToPath.set(id, path);
+  for (const [path, id] of dirNodeMap.entries()) idToPath.set(id, path);
+  for (const node of symbolNodes) idToPath.set(node.id, node.file);
+
+  return { editor, fileMap, dirFiles, dirNodeMap, idToPath, symbolMap };
+}
+
+// ── Consumer-specific CSS (toolbar, stats, pin overlay) ──
+// Node styling, chip decorations, connection strokes, frame styling
+// are all handled by the PCB_DARK theme in the library.
+const PCB_CSS = `
+  pg-dep-graph {
+    display: block;
+    height: 100%;
+    position: relative;
+    overflow: hidden;
+    background: var(--sn-bg, #1a1a1a);
+    /* Prevent scrollbar oscillation in parent .panel-content (overflow:auto)
+       Canvas manages its own viewport — no scrollbars needed */
+    contain: strict;
+  }
+
+  pg-dep-graph node-canvas,
+  pg-dep-graph pg-canvas-graph {
+    width: 100%;
+    height: 100%;
+  }
+
+  /* Toolbar */
+  .pcb-toolbar {
+    position: absolute;
+    top: 8px;
+    right: 8px;
+    display: flex;
+    gap: 6px;
+    z-index: 200;
+  }
+
+  .pcb-btn {
+    background: var(--sn-node-bg, #222222);
+    border: 1px solid var(--sn-node-border, rgba(255,255,255,0.12));
+    color: var(--sn-text, #e0e0e0);
+    border-radius: 3px;
+    padding: 4px 10px;
+    font-family: var(--sn-font, 'SF Mono', monospace);
+    font-size: 10px;
+    cursor: pointer;
+    display: flex;
+    align-items: center;
+    gap: 4px;
+    transition: background 150ms, border-color 150ms;
+  }
+
+  .pcb-btn:hover {
+    background: var(--sn-node-hover, #2d2d2d);
+  }
+
+  .pcb-btn[data-active] {
+    border-color: var(--sn-node-selected, #d4a04a);
+    background: rgba(212, 160, 74, 0.1);
+  }
+
+  .pcb-btn .material-symbols-outlined {
+    font-size: 14px;
+  }
+
+  /* ── PCB Preloader Overlay ── */
+  .pcb-loader {
+    position: absolute;
+    inset: 0;
+    display: flex;
+    flex-direction: column;
+    align-items: center;
+    justify-content: center;
+    gap: 16px;
+    background: var(--sn-bg, #1a1a1a);
+    z-index: 500;
+    transition: opacity 0.3s ease-out;
+    pointer-events: none;
+  }
+  .pcb-loader[data-hidden] {
+    opacity: 0;
+    pointer-events: none;
+  }
+  .pcb-loader-logo {
+    font-family: var(--sn-font, 'SF Mono', monospace);
+    font-size: 11px;
+    letter-spacing: 0.25em;
+    color: var(--sn-text-dim, #888);
+    text-transform: uppercase;
+  }
+  .pcb-loader-phase {
+    font-family: var(--sn-font, 'SF Mono', monospace);
+    font-size: 10px;
+    color: var(--sn-node-selected, #d4a04a);
+    letter-spacing: 0.15em;
+    text-transform: uppercase;
+    min-height: 14px;
+  }
+  .pcb-loader-track {
+    width: 200px;
+    height: 2px;
+    background: rgba(255,255,255,0.08);
+    border-radius: 1px;
+    overflow: hidden;
+  }
+  .pcb-loader-bar {
+    height: 100%;
+    width: 0%;
+    background: linear-gradient(90deg, #c87533, #d4a04a);
+    border-radius: 1px;
+    transition: width 0.35s ease-out;
+    box-shadow: 0 0 8px rgba(212,160,74,0.5);
+  }
+  .pcb-loader-sub {
+    font-family: var(--sn-font, 'SF Mono', monospace);
+    font-size: 9px;
+    color: var(--sn-text-dim, #666);
+    letter-spacing: 0.08em;
+  }
+
+  .pcb-stats {
+    position: absolute;
+    bottom: 8px;
+    left: 8px;
+    display: flex;
+    gap: 12px;
+    z-index: 10;
+    font-family: var(--sn-font, 'SF Mono', monospace);
+    font-size: 10px;
+    color: var(--sn-text-dim, #888888);
+    background: rgba(26, 26, 26, 0.9);
+    padding: 4px 10px;
+    border-radius: 3px;
+    border: 1px solid rgba(255, 255, 255, 0.08);
+  }
+
+  .pcb-stat-val {
+    color: var(--sn-text, #e0e0e0);
+    font-weight: 600;
+  }
+
+  /* ── Pin Labels (dep-graph-specific feature) ── */
+  .pcb-pin-overlay {
+    position: absolute;
+    top: 0;
+    left: 0;
+    width: 100%;
+    height: 100%;
+    pointer-events: none;
+    z-index: 2;
+    opacity: 0;
+    transition: opacity 0.25s ease-in-out;
+  }
+  .pcb-pin-overlay[data-visible] {
+    opacity: 1;
+  }
+  .pcb-pin {
+    position: absolute;
+    font-family: var(--sn-font, 'JetBrains Mono', monospace);
+    font-size: 8px;
+    line-height: 1;
+    white-space: nowrap;
+    color: var(--sn-text-dim, #888);
+    pointer-events: auto;
+    cursor: default;
+  }
+  .pcb-pin::before {
+    content: '';
+    position: absolute;
+    top: 50%;
+    width: 4px;
+    height: 4px;
+    background: var(--sn-conn-color, #c87533);
+    border-radius: 50%;
+    transform: translateY(-50%);
+  }
+  .pcb-pin[data-side="left"] {
+    left: -4px;
+    transform: translateX(-100%);
+    text-align: right;
+    padding-right: 8px;
+  }
+  .pcb-pin[data-side="left"]::before {
+    right: 0;
+  }
+  .pcb-pin[data-side="right"] {
+    right: -4px;
+    transform: translateX(100%);
+    text-align: left;
+    padding-left: 8px;
+  }
+  .pcb-pin[data-side="right"]::before {
+    left: 0;
+  }
+  .pcb-pin[data-kind="class"] {
+    color: var(--sn-cat-control, #d4a04a);
+    font-weight: 600;
+  }
+  .pcb-pin[data-kind="fn"] {
+    color: var(--sn-text, #e0e0e0);
+  }
+  .pcb-pin:hover {
+    color: var(--sn-node-selected, #d4a04a) !important;
+    text-shadow: 0 0 4px rgba(212, 160, 74, 0.4);
+  }
+  .pcb-pin[style*="cursor: pointer"]:hover::after {
+    content: '→';
+    margin-left: 3px;
+    font-size: 7px;
+    opacity: 0.6;
+  }
+
+  /* Toolbar separator */
+  .pcb-toolbar-sep {
+    width: 1px;
+    background: rgba(255,255,255,0.1);
+    margin: 0 4px;
+    align-self: stretch;
+  }
+
+  /* Layer toggle buttons */
+  .pcb-layer-btn {
+    font-size: 9px;
+    padding: 3px 6px;
+    opacity: 0.7;
+  }
+  .pcb-layer-btn[data-active] {
+    opacity: 1;
+  }
+  .pcb-layer-btn[data-hidden] {
+    opacity: 0.3;
+    text-decoration: line-through;
+  }
+`;
+
+export class DepGraph extends Symbiote {
+  init$ = {};
+
+
+  /** @type {NodeEditor|null} */
+  _editor = null;
+  /** @type {boolean} Tracks whether a node was dragged (suppresses click-to-focus) */
+  _wasDragged = false;
+  /** @type {Map<string, string>} */
+  _fileMap = new Map();
+  /** @type {boolean} */
+  _autopilot = false;
+  /** @type {HTMLElement|null} */
+  _canvas = null;
+  /** @type {object|null} Skeleton data for resolving pin names */
+  _skeleton = null;
+  /** @type {SubgraphRouter} */
+  _router = null;
+  /** @type {PinExpansion} */
+  _pinExpansion = null;
+  /** @type {LODManager} */
+  _lodManager = null;
+  /** @type {boolean} Guard against duplicate graph builds */
+  _graphBuilt = false;
+
+  /**
+   * Update the PCB preloader overlay
+   * @param {number} pct - 0-100 progress percent
+   * @param {string} phase - phase label
+   * @param {string} [sub] - optional subtitle
+   */
+  _setProgress(pct, phase, sub = '') {
+    const loader = this.querySelector('#pcb-loader');
+    if (!loader) return;
+    const bar = loader.querySelector('#pcb-loader-bar');
+    const phaseEl = loader.querySelector('#pcb-loader-phase');
+    const subEl = loader.querySelector('#pcb-loader-sub');
+    if (bar) bar.style.width = `${pct}%`;
+    if (phaseEl) phaseEl.textContent = phase;
+    if (subEl) subEl.textContent = sub;
+  }
+
+  /** Hide the PCB preloader overlay */
+  _hideLoader() {
+    const loader = this.querySelector('#pcb-loader');
+    if (!loader) return;
+    loader.setAttribute('data-hidden', '');
+    // Remove from DOM after fade to avoid blocking pointer events
+    setTimeout(() => loader.remove(), 350);
+  }
+
+  /** Show (or re-show) the PCB preloader overlay — safe to call multiple times */
+  _showLoader() {
+    // Remove any stale loader first
+    this.querySelector('#pcb-loader')?.remove();
+    const loader = document.createElement('div');
+    loader.className = 'pcb-loader';
+    loader.id = 'pcb-loader';
+    loader.innerHTML = `
+      <div class="pcb-loader-logo">Project Graph</div>
+      <div class="pcb-loader-phase" id="pcb-loader-phase">Initializing…</div>
+      <div class="pcb-loader-track">
+        <div class="pcb-loader-bar" id="pcb-loader-bar"></div>
+      </div>
+      <div class="pcb-loader-sub" id="pcb-loader-sub"></div>
+    `;
+    // Insert before node-canvas so it renders on top
+    const canvas = this.querySelector('node-canvas');
+    if (canvas) {
+      this.insertBefore(loader, canvas);
+    } else {
+      this.appendChild(loader);
+    }
+  }
+
+  initCallback() {
+    // Build DOM
+    this.innerHTML = `
+      <div class="pcb-toolbar">
+        <button class="pcb-btn" data-action="fit" title="Fit view">
+          <span class="material-symbols-outlined">fit_screen</span>
+          FIT
+        </button>
+        <div class="pcb-toolbar-sep"></div>
+        <button class="pcb-btn label-mode-btn pcb-structured-only" data-mode="always" data-active title="Always show labels">LBL:ALW</button>
+        <button class="pcb-btn label-mode-btn pcb-structured-only" data-mode="hover" title="Hover labels">LBL:HOV</button>
+        <button class="pcb-btn label-mode-btn pcb-structured-only" data-mode="focus" title="Focus labels">LBL:FOC</button>
+        <div class="pcb-toolbar-sep pcb-structured-only"></div>
+        <button class="pcb-btn pcb-layer-btn pcb-structured-only" data-layer="zones" data-active title="Toggle directory zones">ZONES</button>
+        <button class="pcb-btn pcb-layer-btn pcb-structured-only" data-layer="vias" data-active title="Toggle via markers">VIAS</button>
+        <div class="pcb-toolbar-sep"></div>
+        <button class="pcb-btn" data-action="view-mode" title="Toggle view: Flat ↔ Structured">
+          <span class="material-symbols-outlined">account_tree</span>
+          FLAT
+        </button>
+        <button class="pcb-btn pcb-structured-only" data-action="path-style" title="Toggle lines: PCB ↔ Bezier">
+          <span class="material-symbols-outlined">route</span>
+          PCB
+        </button>
+      </div>
+      <node-canvas connection-engine="canvas"></node-canvas>
+      <pg-canvas-graph></pg-canvas-graph>
+      <div class="pcb-stats"></div>
+    `;
+
+    this._canvas = this.querySelector('node-canvas');
+    this._pgCanvasGraph = this.querySelector('pg-canvas-graph');
+
+    // Toolbar handlers
+    this.querySelector('[data-action="fit"]').addEventListener('click', () => {
+      if (this._viewMode === 'flat') {
+        this._pgCanvasGraph?.resetView();
+      } else {
+        this._canvas?.fitView();
+      }
+    });
+    
+    this._pgCanvasGraph.addEventListener('path-changed', (e) => {
+      if (this._viewMode === 'flat' && this._initialViewRestored) {
+        const path = e.detail.path;
+        const hash = path ? `#graph/${path}` : `#graph`;
+        // Preserve mode query param but clear focus= when returning to root
+        let searchStr = window.location.hash.includes('?') ? '?' + window.location.hash.split('?')[1] : '';
+        if (!path && searchStr) {
+          // Remove focus param when exiting to root
+          const params = new URLSearchParams(searchStr.slice(1));
+          params.delete('focus');
+          searchStr = params.toString() ? '?' + params.toString() : '';
+        }
+        history.replaceState(null, '', hash + searchStr);
+      }
+    });
+    
+    this._pgCanvasGraph.addEventListener('file-selected', (e) => {
+      const path = e.detail.path;
+      // Update URL with focus= so it's bookmarkable
+      this._updateHashParam('focus', path);
+      emit('file-selected', { path, source: 'canvas' });
+    });
+
+    this._pgCanvasGraph.addEventListener('group-selected', (e) => {
+      const path = e.detail.path;
+      // Update URL with focus= so group selection is also bookmarkable in flat mode
+      this._updateHashParam('focus', path);
+      // Sync: highlight directory in the tree sidebar (add trailing / for dir convention)
+      emit('file-selected', { path: path + '/', source: 'canvas' });
+    });
+
+    // Deselect in flat mode: clear focus= when clicking empty space
+    this._pgCanvasGraph.addEventListener('node-deselected', () => {
+      if (!this._initialViewRestored) return;
+      if (window.location.hash.includes('focus=')) {
+        this._updateHashParam('focus', null);
+      }
+    });
+    
+    // Flat mode init: fitView early after a few ticks (not waiting for full convergence)
+    // In continuous mode, layout-done can take seconds. Positions are usable after ~10 ticks.
+    this._flatTickCount = 0;
+    this._pgCanvasGraph.addEventListener('layout-tick', () => {
+      if (this._viewMode !== 'flat' || this._initialViewRestored) return;
+      this._flatTickCount++;
+      if (this._flatTickCount >= 10) {
+        this._initialViewRestored = true;
+        this._restoreFlatFocus();
+      }
+    });
+    // Fallback: also listen for layout-done in case continuous mode is disabled
+    this._pgCanvasGraph.addEventListener('layout-done', () => {
+      if (this._viewMode === 'flat' && !this._initialViewRestored) {
+        this._initialViewRestored = true;
+        this._restoreFlatFocus();
+      }
+    });
+    
+    // Follow mode: listen for global state (set from topbar)
+    events.addEventListener('follow-mode-changed', (e) => {
+      this._autopilot = e.detail.enabled;
+    });
+
+    // Label Mode controls
+    const labelBtns = this.querySelectorAll('.label-mode-btn');
+    labelBtns.forEach(btn => {
+      btn.addEventListener('click', (e) => {
+        labelBtns.forEach(b => b.removeAttribute('data-active'));
+        btn.setAttribute('data-active', '');
+        const mode = btn.getAttribute('data-mode');
+        this._canvas.setAttribute('data-label-mode', mode);
+      });
+    });
+
+    // Phase 3: Layer toggle controls
+    this.querySelectorAll('.pcb-layer-btn').forEach(btn => {
+      btn.addEventListener('click', () => {
+        const layer = btn.getAttribute('data-layer');
+        const isActive = btn.hasAttribute('data-active');
+        if (isActive) {
+          btn.removeAttribute('data-active');
+          btn.setAttribute('data-hidden', '');
+        } else {
+          btn.setAttribute('data-active', '');
+          btn.removeAttribute('data-hidden');
+        }
+        this._toggleLayer(layer, !isActive);
+      });
+    });
+
+    const searchStr = window.location.search || (window.location.hash.includes('?') ? window.location.hash.split('?')[1] : '');
+    const urlParams = new URLSearchParams(searchStr);
+    // Support both ?mode=flat and legacy ?flat=true
+    const modeParam = urlParams.get('mode') || (urlParams.get('flat') === 'true' ? 'flat' : null);
+    this._viewMode = modeParam === 'flat' ? 'flat' : 'structured';
+    const viewModeBtn = this.querySelector('[data-action="view-mode"]');
+    if (viewModeBtn) {
+      const icon = modeParam === 'flat' ? 'account_tree' : 'grid_view';
+      const text = modeParam === 'flat' ? 'FLAT' : 'TREE';
+      viewModeBtn.innerHTML = `<span class="material-symbols-outlined">${icon}</span>${text}`;
+      if (modeParam === 'flat') {
+        viewModeBtn.removeAttribute('data-active');
+      }
+    }
+    // Hide structured-only buttons in flat mode
+    this._updateStructuredOnlyVisibility(this._viewMode);
+    viewModeBtn?.addEventListener('click', () => {
+      const wantFlat = this._viewMode !== 'flat';
+      this._viewMode = wantFlat ? 'flat' : 'structured';
+      const label = this._viewMode === 'flat' ? 'FLAT' : 'TREE';
+      const icon = this._viewMode === 'flat' ? 'account_tree' : 'grid_view';
+      viewModeBtn.innerHTML = `<span class="material-symbols-outlined">${icon}</span>${label}`;
+      if (this._viewMode === 'structured') {
+        viewModeBtn.setAttribute('data-active', '');
+      } else {
+        viewModeBtn.removeAttribute('data-active');
+      }
+      this._updateStructuredOnlyVisibility(this._viewMode);
+
+      // Persist mode in URL hash
+      this._updateHashParam('mode', this._viewMode === 'flat' ? 'flat' : 'tree');
+
+      // Drill up to root before rebuilding to prevent rendering
+      // the full graph on top of a stale subgraph canvas state
+      if (this._router?.depth > 0) {
+        this._canvas.drillUp?.(0);
+      }
+
+      // Rebuild graph in new mode
+      this._graphBuilt = false;
+      this._initialViewRestored = false;
+      if (this._failsafeTimer) { clearTimeout(this._failsafeTimer); this._failsafeTimer = null; }
+      this._showLoader();
+      if (state.skeleton) {
+        this._buildGraph(state.skeleton);
+      }
+    });
+
+    // Connection Path Style toggling
+    const pathStyleBtn = this.querySelector('[data-action="path-style"]');
+    if (pathStyleBtn) {
+      let currentStyle = urlParams.get('style') || window.localStorage.getItem('connection-style') || 'pcb';
+      const styles = ['pcb', 'bezier', 'orthogonal', 'straight'];
+      
+      const updateStyleUI = () => {
+        let icon, text;
+        switch(currentStyle) {
+          case 'bezier': icon = 'timeline'; text = 'BEZIER'; break;
+          case 'orthogonal': icon = 'polyline'; text = 'ORTHO'; break;
+          case 'straight': icon = 'horizontal_rule'; text = 'STRAIGHT'; break;
+          case 'pcb':
+          default:
+            icon = 'route'; text = 'PCB'; break;
+        }
+        pathStyleBtn.innerHTML = `<span class="material-symbols-outlined">${icon}</span>${text}`;
+        if (currentStyle === 'pcb') {
+          pathStyleBtn.setAttribute('data-active', '');
+        } else {
+          pathStyleBtn.removeAttribute('data-active');
+        }
+      };
+      updateStyleUI();
+      
+      pathStyleBtn.addEventListener('click', () => {
+        const idx = styles.indexOf(currentStyle);
+        currentStyle = styles[(idx + 1) % styles.length] || 'pcb';
+        window.localStorage.setItem('connection-style', currentStyle);
+        this._canvas.setPathStyle(currentStyle);
+        updateStyleUI();
+      });
+    }
+
+    // Apply PCB theme
+    applyTheme(this._canvas, PCB_DARK);
+
+    // Setup ResizeObserver to gracefully handle "Layout preserved" (display: none) hidden panels.
+    // Prevents building graphs while they have 0 width/height, dodging layout thrashing & 50,000+ DOM mutations
+    const ro = new ResizeObserver((entries) => {
+      const rect = entries[0].contentRect;
+      if (rect.width > 0 && rect.height > 0) {
+        if (!this._graphBuilt && state.skeleton) {
+          // Wrap in rAF to prevent loop if ResizeObserver caught mid-render
+          requestAnimationFrame(() => this._buildGraph(state.skeleton));
+        }
+      }
+    });
+    ro.observe(this);
+    this._resizeObserver = ro;
+
+    // Bind and save global listener functions for clean up
+    this._onSkeletonLoaded = (e) => {
+      if (this._graphBuilt || this.style.display === 'none' || this.offsetWidth === 0) return;
+      requestAnimationFrame(() => this._buildGraph(e.detail));
+    };
+    
+    this._onToolEvent = (e) => {
+      if (this.style.display === 'none' || this.offsetWidth === 0) return;
+      if (this._autopilot) {
+        this._handleAutopilot(e.detail);
+      }
+    };
+    
+    this._onFileSelected = (e) => {
+      if (this.style.display === 'none' || this.offsetWidth === 0) return;
+      if (e.detail.source === 'canvas') return; // Prevent echo from our own clicks
+      const file = e.detail.path;
+      if (file) {
+        this._updateHashParam('focus', file);
+        // Strip trailing slash for directory paths — canvas-graph stores dirs without trailing /
+        const nodeId = file.endsWith('/') ? file.replace(/\/$/, '') : file;
+        if (this._viewMode === 'flat' && this._pgCanvasGraph) {
+          this._pgCanvasGraph.flyToNode(nodeId);
+        } else {
+          this._router?.navigateTo(file);
+        }
+      }
+    };
+
+    // Wait for canvas to initialize, then listen for data
+    events.addEventListener('skeleton-loaded', this._onSkeletonLoaded);
+
+    // Initial fetch if we don't have it
+    if (!state.skeleton) {
+      // Self-fetch skeleton (graph panel may mount before FileTree)
+      api('/api/skeleton', {}).then((skeleton) => {
+        if (skeleton && !this._graphBuilt) {
+          state.skeleton = skeleton;
+          emit('skeleton-loaded', skeleton);
+        }
+      }).catch(() => {});
+    }
+
+    // Autopilot: listen for agent tool events
+    events.addEventListener('tool-event', this._onToolEvent);
+
+    // Update route within graph section
+    // On node click → save file path (just focusing)
+    this._canvas?.addEventListener('click', (e) => {
+      const nodeEl = e.target.closest('graph-node');
+      if (!nodeEl) return;
+
+      // Skip click-to-focus if this click came from a drag-end
+      if (this._wasDragged) {
+        this._wasDragged = false;
+        return;
+      }
+      
+      const nodeId = nodeEl.getAttribute('node-id');
+      const path = this._idToPath?.get(nodeId);
+      const isSymbol = this._symbolMap?.has(nodeId);
+      const depth = this._router?.depth || 0;
+
+      if (isSymbol) {
+        // Symbol click: keep current drill URL, append &symbol=
+        const sym = this._symbolMap.get(nodeId);
+        this._updateHashParam('symbol', sym.name);
+        // Highlight the parent file in the tree sidebar
+        if (sym.file) {
+          emit('file-selected', { path: sym.file, source: 'canvas' });
+        }
+      } else if (path) {
+        if (depth === 0) {
+          // Root level: path goes into ?focus= parameter
+          this._updateHashParam('focus', path);
+          this._updateHashParam('in', null);
+          // Pan/zoom to the clicked node — it's already visible, no need to drill
+          if (nodeId && this._canvas?.flyToNode) {
+            this._canvas.flyToNode(nodeId, { zoom: 0.9 });
+          }
+        } else {
+          // Inside a group: preserve drill context URL, set &focus= with relative name
+          const drillBase = window.location.hash.split('?')[0]; // e.g. #graph/src/analysis/
+          const drillPath = drillBase.replace('#graph/', '');
+          // Get relative name inside the drilled group
+          const relativeName = path.startsWith(drillPath) ? path.slice(drillPath.length) : path;
+          // Keep existing parameters except we update focus and ensure in=1 is set
+          this._updateHashParam('focus', relativeName);
+          this._updateHashParam('in', '1');
+          
+          // Pan/zoom to the clicked node within current subgraph
+          if (nodeId && this._canvas?.flyToNode) {
+            this._canvas.flyToNode(nodeId, { zoom: 0.9 });
+          }
+        }
+        // Sync: highlight file in the tree sidebar
+        emit('file-selected', { path, source: 'canvas' });
+      }
+
+    });
+
+    // Deselect: when no nodes selected → clear focus from URL
+    this._canvas?.addEventListener('selection-changed', (e) => {
+      if (e.detail.nodes.length > 0) return; // Still has selection
+      if (!this._initialViewRestored) return; // Don't clear URL during initial load
+      const hash = window.location.hash;
+      if (hash.includes('focus=')) {
+        this._updateHashParam('focus', null);
+      }
+    });
+
+    // Toolbar custom actions (e.g. explore, view-code, enter)
+    this.addEventListener('toolbar-action', (e) => {
+      const { action, nodeId } = e.detail;
+      if (action === 'explore') {
+        if (this._viewMode === 'flat') {
+          this._pgCanvasGraph?.flyToNode(nodeId);
+        } else {
+          this._exploreFromNode(nodeId);
+        }
+      } else if (action === 'view-code') {
+        let file;
+        if (this._viewMode === 'flat') {
+          file = nodeId;
+        } else {
+          const path = this._idToPath?.get(nodeId);
+          const isSymbol = this._symbolMap?.has(nodeId);
+          file = isSymbol ? this._symbolMap.get(nodeId).file : path;
+        }
+        if (file) {
+          window.location.hash = `#explorer/${file}`;
+        }
+      } else if (action === 'enter') {
+        if (this._viewMode === 'flat' && this._pgCanvasGraph) {
+          this._pgCanvasGraph.drill(nodeId);
+        }
+      }
+    });
+
+    events.addEventListener('file-selected', this._onFileSelected);
+
+    // React to hash changes from file-tree, back/forward, or external URL paste
+    this._onHashChange = () => {
+      const hash = window.location.hash;
+      if (!hash.startsWith('#graph')) return;
+      
+      if (this._viewMode === 'flat') {
+        const [hashBase, queryStr] = hash.replace('#', '').split('?');
+        const hashParams = hashBase.split('/');
+        if (hashParams[0] === 'graph') hashParams.shift();
+        const pathStr = hashParams.join('/');
+        if (this._pgCanvasGraph) this._pgCanvasGraph.setPath(pathStr);
+        // Parse and apply focus= parameter
+        if (queryStr) {
+          const params = new URLSearchParams(queryStr);
+          const focusParam = params.get('focus');
+          if (focusParam && this._pgCanvasGraph) {
+            this._pgCanvasGraph.flyToNode(decodeURIComponent(focusParam));
+          }
+        }
+        return;
+      }
+      
+      if (!this._router || !this._editor || !this._initialViewRestored) return;
+      
+      let attempts = 0;
+      const doRestore = () => {
+        if (this.offsetWidth > 0 && this.offsetHeight > 0) {
+          this._router.restoreFromHash(this._editor);
+        } else if (attempts < 20) {
+          attempts++;
+          requestAnimationFrame(doRestore);
+        }
+      };
+      doRestore();
+    };
+    window.addEventListener('hashchange', this._onHashChange);
+  }
+
+  disconnectedCallback() {
+    super.disconnectedCallback?.();
+    if (this._onSkeletonLoaded) events.removeEventListener('skeleton-loaded', this._onSkeletonLoaded);
+    if (this._onToolEvent) events.removeEventListener('tool-event', this._onToolEvent);
+    if (this._onFileSelected) events.removeEventListener('file-selected', this._onFileSelected);
+    if (this._onHashChange) window.removeEventListener('hashchange', this._onHashChange);
+    if (this._resizeObserver) {
+      this._resizeObserver.disconnect();
+      this._resizeObserver = null;
+    }
+  }
+
+  /**
+   * Count total files in skeleton (quick, no graph construction)
+   * @param {object} skeleton
+   * @returns {number}
+   */
+  _countSkeletonFiles(skeleton) {
+    const files = new Set();
+    for (const data of Object.values(skeleton.n || {})) if (data.f) files.add(data.f);
+    for (const file of Object.keys(skeleton.X || {})) files.add(file);
+    for (const [dir, names] of Object.entries(skeleton.f || {}))
+      for (const name of names) files.add(dir === './' ? name : dir + name);
+    for (const [dir, names] of Object.entries(skeleton.a || {}))
+      for (const name of names) files.add(dir === './' ? name : dir + name);
+    return files.size;
+  }
+
+  /**
+   * Restore focus= from URL in flat mode (where SubgraphRouter is not available).
+   * Parses the hash, extracts path drill + focus param, and calls flyToNode.
+   */
+  _restoreFlatFocus() {
+    const hash = window.location.hash;
+    const [hashBase, queryStr] = hash.replace('#', '').split('?');
+    
+    // Apply drill path if present: #graph/src/core/ → setPath('src/core')
+    const hashParams = hashBase.split('/');
+    if (hashParams[0] === 'graph') hashParams.shift();
+    const pathStr = hashParams.join('/');
+    if (pathStr && this._pgCanvasGraph) {
+      this._pgCanvasGraph.setPath(pathStr);
+    }
+    
+    // Apply focus= if present
+    if (queryStr) {
+      const params = new URLSearchParams(queryStr);
+      const focusParam = params.get('focus');
+      if (focusParam && this._pgCanvasGraph) {
+        const decoded = decodeURIComponent(focusParam);
+        // Skip if focus target is the same group we just drilled into
+        const focusClean = decoded.replace(/\/$/, '');
+        if (focusClean === pathStr) {
+          // We're already inside this group — just fit the view
+          return;
+        }
+        requestAnimationFrame(() => {
+          this._pgCanvasGraph.flyToNode(decoded);
+        });
+        // Check if focus target is a group (directory) — tree uses trailing / for dirs
+        const graphNode = this._pgCanvasGraph.graphDB?.nodes.get(decoded);
+        const treePath = (graphNode && graphNode.isGroup) ? decoded + '/' : decoded;
+        // Sync tree sidebar
+        state.activeFile = treePath;
+        emit('file-selected', { path: treePath, source: 'canvas' });
+        setTimeout(() => emit('file-selected', { path: treePath, source: 'canvas' }), 500);
+        return;
+      }
+    }
+    
+    // No focus param — fit the full view
+    if (this._pgCanvasGraph) {
+      this._pgCanvasGraph.fitView?.();
+    }
+  }
+
+  /**
+   * Update a single URL hash parameter without page reload.
+   * Preserves existing hash path and other params.
+   * @param {string} key - Parameter name (e.g. 'mode', 'focus')
+   * @param {string|null} value - Parameter value, null to remove
+   */
+  /**
+   * Show/hide toolbar buttons that only apply in structured mode.
+   * @param {string} mode - 'flat' or 'structured'
+   */
+  _updateStructuredOnlyVisibility(mode) {
+    const hide = mode === 'flat';
+    this.querySelectorAll('.pcb-structured-only').forEach(el => {
+      el.style.display = hide ? 'none' : '';
+    });
+  }
+
+  _updateHashParam(key, value) {
+    const hash = window.location.hash;
+    const [basePath, queryStr] = hash.split('?');
+    const params = new URLSearchParams(queryStr || '');
+    if (value === null || value === undefined) {
+      params.delete(key);
+    } else {
+      params.set(key, value);
+    }
+    const newQuery = params.toString();
+    const newHash = newQuery ? `${basePath}?${newQuery}` : basePath;
+    history.replaceState(null, '', newHash);
+  }
+
+  /**
+   * Detect disconnected components in the graph and stack smaller ones
+   * compactly below the main cluster. Without this, outlier chains
+   * (e.g. android.py) stretch BBox 10x+ beyond the main cluster.
+   * @param {NodeEditor} editor
+   * @param {Object} positions - {nodeId: {x, y}}
+   * @returns {Object} compacted positions
+   */
+  _compactDisconnectedComponents(editor, positions) {
+    const nodes = editor.getNodes();
+    const conns = editor.getConnections();
+    if (nodes.length < 2) return positions;
+
+    // Build adjacency list (undirected)
+    const adj = new Map();
+    for (const n of nodes) adj.set(n.id, []);
+    for (const c of conns) {
+      if (adj.has(c.from)) adj.get(c.from).push(c.to);
+      if (adj.has(c.to)) adj.get(c.to).push(c.from);
+    }
+
+    // BFS to find connected components
+    const visited = new Set();
+    const components = [];
+    for (const n of nodes) {
+      if (visited.has(n.id)) continue;
+      const component = [];
+      const queue = [n.id];
+      visited.add(n.id);
+      while (queue.length > 0) {
+        const id = queue.shift();
+        component.push(id);
+        for (const neighbor of (adj.get(id) || [])) {
+          if (!visited.has(neighbor)) {
+            visited.add(neighbor);
+            queue.push(neighbor);
+          }
+        }
+      }
+      components.push(component);
+    }
+
+    // Only one component — nothing to compact
+    if (components.length <= 1) return positions;
+
+    // Sort by size desc — largest is the main cluster
+    components.sort((a, b) => b.length - a.length);
+
+    // Compute bounding box for each component
+    const GAP = 200; // gap between stacked components
+    const bboxes = components.map(comp => {
+      let minX = Infinity, minY = Infinity, maxX = -Infinity, maxY = -Infinity;
+      for (const id of comp) {
+        const p = positions[id];
+        if (!p) continue;
+        if (p.x < minX) minX = p.x;
+        if (p.y < minY) minY = p.y;
+        if (p.x + 180 > maxX) maxX = p.x + 180; // approx node width
+        if (p.y + 60 > maxY) maxY = p.y + 60;   // approx node height
+      }
+      return { minX, minY, maxX, maxY, w: maxX - minX, h: maxY - minY };
+    });
+
+    // Main cluster stays in place. Stack others below it.
+    const mainBBox = bboxes[0];
+    let cursorY = mainBBox.maxY + GAP;
+
+    for (let i = 1; i < components.length; i++) {
+      const comp = components[i];
+      const bbox = bboxes[i];
+      if (bbox.minX === Infinity) continue; // no positions
+
+      // Offset: shift to align left with main cluster, below current cursor
+      const dx = mainBBox.minX - bbox.minX;
+      const dy = cursorY - bbox.minY;
+
+      for (const id of comp) {
+        if (positions[id]) {
+          positions[id] = {
+            x: positions[id].x + dx,
+            y: positions[id].y + dy,
+          };
+        }
+      }
+      cursorY += bbox.h + GAP;
+    }
+
+    return positions;
+  }
+
+  /**
+   * Start radial exploration from a focus node.
+   * Shows the node at center with imports (left) and dependents (right).
+   * @param {string} nodeId
+   */
+  _exploreFromNode(nodeId) {
+    const editor = this._editor;
+    if (!editor || !this._canvas) return;
+
+    const conns = editor.getConnections();
+    const nodePath = this._idToPath?.get(nodeId) || nodeId;
+
+    // Find imports (outgoing from this node) and dependents (incoming to this node)
+    const imports = [];     // files this node imports
+    const dependents = [];  // files that import this node
+
+    for (const c of conns) {
+      if (c.from === nodeId && c.to !== nodeId) imports.push(c.to);
+      if (c.to === nodeId && c.from !== nodeId) dependents.push(c.from);
+    }
+
+    // Dedup
+    const importSet = [...new Set(imports)];
+    const dependentSet = [...new Set(dependents)];
+    const allExplore = new Set([nodeId, ...importSet, ...dependentSet]);
+
+    // Save pre-explore state for back navigation
+    if (!this._exploreStack) this._exploreStack = [];
+    this._exploreStack.push({
+      positions: this._canvas.getPositions(),
+      zoom: this._canvas.$.zoom,
+      panX: this._canvas.$.panX,
+      panY: this._canvas.$.panY,
+    });
+
+    // Radial layout: focus at center
+    // Imports on LEFT hemisphere, dependents on RIGHT
+    const RADIUS_INNER = 500;
+    const positions = {};
+    positions[nodeId] = { x: 0, y: 0 };
+
+    // Place imports (left hemisphere: angles from 90° to 270°)
+    importSet.forEach((id, i) => {
+      const t = (i + 1) / (importSet.length + 1); // 0..1 evenly spaced
+      const angle = Math.PI / 2 + Math.PI * t;     // 90° → 270° (left)
+      positions[id] = {
+        x: RADIUS_INNER * Math.cos(angle),
+        y: RADIUS_INNER * Math.sin(angle),
+      };
+    });
+
+    // Place dependents (right hemisphere: angles from -90° to 90°)
+    dependentSet.forEach((id, i) => {
+      const t = (i + 1) / (dependentSet.length + 1);
+      const angle = -Math.PI / 2 + Math.PI * t;     // -90° → 90° (right)
+      positions[id] = {
+        x: RADIUS_INNER * Math.cos(angle),
+        y: RADIUS_INNER * Math.sin(angle),
+      };
+    });
+
+    // Move explore nodes to radial positions, push others far below
+    this._canvas.setBatchMode(true);
+    const allNodes = editor.getNodes();
+    for (const n of allNodes) {
+      if (positions[n.id]) {
+        this._canvas.setNodePosition(n.id, positions[n.id].x, positions[n.id].y);
+      } else {
+        // Move non-explore nodes far offscreen (below)
+        this._canvas.setNodePosition(n.id, 0, 50000 + Math.random() * 1000);
+      }
+    }
+    this._canvas.setBatchMode(false);
+    this._canvas.syncPhantom?.();
+
+    // Highlight explore connections
+    const exploreConnIds = conns
+      .filter(c => c.from === nodeId || c.to === nodeId)
+      .map(c => c.id);
+    this._canvas.setActiveConnections?.(exploreConnIds);
+
+    // Fly to focus node
+    this._canvas.flyToNode(nodeId, { zoom: 0.5 });
+
+    // Update URL to reflect explore mode
+    this._updateHashParam('explore', nodePath);
+
+    // Mark explore mode active
+    this._exploreMode = true;
+    this._exploreNodeId = nodeId;
+
+    // Dispatch event for status bar / UI feedback
+    this.dispatchEvent(new CustomEvent('explore-started', {
+      detail: {
+        nodeId,
+        path: nodePath,
+        imports: importSet.length,
+        dependents: dependentSet.length,
+      },
+      bubbles: true,
+    }));
+  }
+
+  /**
+   * Exit explore mode — restore graph to pre-explore state.
+   */
+  _exitExploreMode() {
+    if (!this._exploreStack?.length || !this._canvas) return;
+
+    const state = this._exploreStack.pop();
+
+    this._canvas.setBatchMode(true);
+    for (const [nodeId, pos] of Object.entries(state.positions)) {
+      this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+    }
+    this._canvas.setBatchMode(false);
+    this._canvas.syncPhantom?.();
+
+    // Restore zoom/pan
+    this._canvas.$.zoom = state.zoom;
+    this._canvas.$.panX = state.panX;
+    this._canvas.$.panY = state.panY;
+    this._canvas.refreshConnections();
+
+    // Clear highlight
+    this._canvas.setActiveConnections?.(null);
+
+    this._exploreMode = false;
+    this._exploreNodeId = null;
+    this._updateHashParam('explore', null);
+  }
+
+  /**
+   * Build and render a complete dependency graph from skeleton data.
+   */
+  _buildGraph(skeleton) {
+    if (!skeleton || !this._canvas) return;
+    // Guard: both ResizeObserver and skeleton-loaded schedule rAF calls
+    // that check _graphBuilt BEFORE the rAF. If both fire in the same
+    // frame, _buildGraph runs twice → double nodes. Guard here too.
+    if (this._graphBuilt) return;
+    this._graphBuilt = true;
+
+    // ── Tear down previous build state ──
+    // Disconnect stale ResizeObserver to prevent old callbacks firing on new nodes
+    if (this._nodeObserver) {
+      this._nodeObserver.disconnect();
+      this._nodeObserver = null;
+    }
+    // Cancel pending layout timers/rAFs from previous build
+    if (this._layoutPassTimer) { clearTimeout(this._layoutPassTimer); this._layoutPassTimer = null; }
+    if (this._failsafeTimer) { clearTimeout(this._failsafeTimer); this._failsafeTimer = null; }
+    if (this._refreshRaf) { cancelAnimationFrame(this._refreshRaf); this._refreshRaf = null; }
+    // Reset the view-restored flag so the new build can do its own initial stabilization
+    this._initialViewRestored = false;
+    this._runRelayoutPass = null;
+
+    // Hide canvas during build to prevent visible flicker (pass 1 → pass 2 jump)
+    if (this._canvas) {
+      this._canvas.style.opacity = '0';
+      this._canvas.style.transition = 'none';
+    }
+
+    // Show (or re-show) the preloader overlay — safe to call multiple times
+    this._showLoader();
+
+    // Phase 0: Parsing
+    this._setProgress(10, 'Parsing graph…', '');
+
+    const isStructured = this._viewMode === 'structured';
+
+    if (!isStructured) {
+      if (this._canvas) this._canvas.style.display = 'none';
+      if (this._pgCanvasGraph) {
+        this._pgCanvasGraph.style.display = 'block';
+        this._pgCanvasGraph.setSkeleton(skeleton);
+        
+        // Restore path from URL
+        const hashData = location.hash.replace('#', '').split('?')[0];
+        const hashParams = hashData.split('/');
+        if (hashParams[0] === 'graph') {
+          hashParams.shift(); // remove "graph"
+        }
+        const pathStr = hashParams.join('/');
+        this._pgCanvasGraph.setPath(pathStr);
+      }
+      this._hideLoader();
+      this._graphBuilt = true;
+      return;
+    }
+
+    if (this._pgCanvasGraph) this._pgCanvasGraph.style.display = 'none';
+    if (this._canvas) this._canvas.style.display = '';
+
+    // Cache key: reuse previously built graph for same skeleton+mode
+    const cacheKey = isStructured ? 'structured' : 'flat';
+    if (!this._graphCache) this._graphCache = {};
+
+    let editor, fileMap, dirFiles, dirNodeMap, idToPath, symbolMap;
+
+    if (this._graphCache[cacheKey] && this._graphCache[cacheKey].skeleton === skeleton) {
+      // Reuse cached build result — avoids 5+ second rebuild on mode toggle
+      ({ editor, fileMap, dirFiles, dirNodeMap, idToPath, symbolMap } = this._graphCache[cacheKey]);
+      this._setProgress(40, 'Building nodes…', `${editor.getNodes().length} nodes (cached)`);
+    } else {
+
+      this._setProgress(15, 'Parsing graph…', isStructured ? 'structured mode' : 'flat mode');
+      if (isStructured) {
+        ({ editor, fileMap, dirFiles, dirNodeMap, idToPath, symbolMap } = buildStructuredGraph(skeleton));
+      }
+
+      this._setProgress(40, 'Building nodes…', `${editor.getNodes().length} nodes`);
+      this._graphCache[cacheKey] = { skeleton, editor, fileMap, dirFiles, dirNodeMap, idToPath, symbolMap };
+    }
+    this._editor = editor;
+    this._fileMap = fileMap;
+    this._dirNodeMap = dirNodeMap;
+    this._idToPath = idToPath;
+    this._symbolMap = symbolMap;
+    this._drillableFiles = new Set([...symbolMap.values()].map(s => s.file));
+
+    if (this._router) this._router.destroy();
+    this._router = new SubgraphRouter(this._canvas, {
+      hashPrefix: 'graph',
+      fileMap,
+      dirNodeMap,
+      symbolMap,
+      drillableFiles: this._drillableFiles,
+      onNavigate: (path) => {
+        // Optional hook: focus/pulse upon non-visual navigation
+      }
+    });
+
+    // Set editor on canvas
+
+    this._setProgress(55, 'Building nodes…', 'rendering DOM');
+    this._canvas.setEditor(editor);
+
+    this._setProgress(70, 'Placing nodes…', '');
+
+    // Apply settings
+    this._canvas.setReadonly(true);
+    const searchStr = window.location.search || (window.location.hash.includes('?') ? window.location.hash.split('?')[1] : '');
+    const urlParams = new URLSearchParams(searchStr);
+    this._canvas.setPathStyle(urlParams.get('style') || window.localStorage.getItem('connection-style') || 'pcb');
+
+    // Auto-layout
+    const rawPos = this._canvas.getPositions() || {};
+    const existingPositions = {};
+    for (const [id, coords] of Object.entries(rawPos)) {
+      if (typeof coords[0] === 'number' && !isNaN(coords[0]) &&
+          typeof coords[1] === 'number' && !isNaN(coords[1])) {
+        existingPositions[id] = { x: coords[0], y: coords[1] };
+      }
+    }
+
+    // Groups for layout clustering (flat mode only — structured has fewer top-level nodes)
+    const groups = {};
+    if (!isStructured && dirFiles) {
+      for (const [dir, files] of dirFiles.entries()) {
+        const nodeIds = [];
+        for (const f of files) {
+          if (fileMap.has(f)) nodeIds.push(fileMap.get(f));
+        }
+        if (nodeIds.length > 0) groups[dir] = nodeIds;
+      }
+    }
+
+    // --- Layout strategy depends on mode ---
+    let positions;
+
+    if (isStructured && dirFiles) {
+      // TREE mode: directory tree layout (like file explorer)
+      // Build dirPaths map ONLY for nodes that are in the root editor
+      const dirPaths = {};
+      const rootNodeIds = new Set(editor.getNodes().map(n => n.id));
+      for (const [dir, nodeId] of dirNodeMap.entries()) {
+        if (rootNodeIds.has(nodeId)) {
+          dirPaths[nodeId] = dir;
+        }
+      }
+
+      positions = computeTreeLayout(editor, {
+        dirPaths,
+        nodeWidth: 250,
+        nodeHeight: 100,
+        gapX: 40,
+        gapY: 60,
+        startX: 60,
+        startY: 60,
+      });
+    } else {
+      // FLAT mode: group-aware circular initial positions for force simulation.
+      // AutoLayout (Sugiyama) creates a vertical line that ForceWorker cannot fix,
+      // so we start with a balanced 2D circular layout.
+      const allNodes = [...editor.getNodes()];
+      const totalNodes = allNodes.length;
+      const groupEntries = Object.entries(groups);
+      positions = {};
+
+      if (groupEntries.length > 1) {
+        // Place each group's centroid on a spiral, fan members around it
+        const globalRadius = Math.sqrt(totalNodes) * 80;
+        let groupIdx = 0;
+        for (const [, memberIds] of groupEntries) {
+          const angle = (2 * Math.PI * groupIdx) / groupEntries.length;
+          const r = globalRadius * (0.3 + 0.7 * (groupIdx / groupEntries.length));
+          const cx = Math.cos(angle) * r;
+          const cy = Math.sin(angle) * r;
+          const memberRadius = Math.sqrt(memberIds.length) * 60;
+          for (let mi = 0; mi < memberIds.length; mi++) {
+            const mAngle = (2 * Math.PI * mi) / memberIds.length;
+            positions[memberIds[mi]] = {
+              x: cx + Math.cos(mAngle) * memberRadius + (Math.random() - 0.5) * 20,
+              y: cy + Math.sin(mAngle) * memberRadius + (Math.random() - 0.5) * 20,
+            };
+          }
+          groupIdx++;
+        }
+      }
+
+      // Fill ungrouped nodes in a ring
+      for (const n of allNodes) {
+        if (!positions[n.id]) {
+          const angle = Math.random() * 2 * Math.PI;
+          const r = Math.sqrt(totalNodes) * 50 + Math.random() * 200;
+          positions[n.id] = { x: Math.cos(angle) * r, y: Math.sin(angle) * r };
+        }
+      }
+    }
+
+    this._canvas.setBatchMode(true);
+    for (const [nodeId, pos] of Object.entries(positions)) {
+      this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+    }
+    this._canvas.setBatchMode(false);
+
+    // Force sync updated phantom positions to renderer immediately
+    // Without this, subsequent fitView/redraw uses stale (0,0) phantom data
+    this._canvas.syncPhantom?.();
+
+    // For large graphs (>200 nodes) the ResizeObserver in Pass 2 will never fire
+    // because phantom-mode nodes have no real DOM elements to observe.
+    // We must start ForceLayout HERE (Pass 1) with the circular seed positions.
+    // The canvas stays hidden; onDone reveals it.
+    const nodeCount = editor.getNodes().length;
+    if (!isStructured && nodeCount > 50) {
+      if (!this._forceLayout) {
+        const workerUrl = new URL('../vendor/symbiote-node/canvas/ForceWorker.js', import.meta.url).href;
+        this._forceLayout = new ForceLayout(workerUrl);
+      }
+
+      const editorNodes = [...editor.getNodes()];
+      const editorConns = [...editor.getConnections()];
+      const forceNodes = editorNodes.map(n => ({
+        id: n.id,
+        x: positions[n.id]?.x ?? 0,
+        y: positions[n.id]?.y ?? 0,
+        group: groups ? Object.entries(groups).find(([, ids]) => ids.includes(n.id))?.[0] : null,
+        w: n.params?.calculatedWidth || 260,
+        h: n.params?.calculatedHeight || 60,
+      }));
+      const forceEdges = editorConns.map(c => ({ from: c.from, to: c.to }));
+
+      // Live tick updates so user sees nodes moving rather than a freeze
+      this._forceLayout.onTick = (tickPositions) => {
+        if (!this._canvas) return;
+        this._canvas.setBatchMode(true);
+        for (const [nodeId, pos] of Object.entries(tickPositions)) {
+          this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+        }
+        this._canvas.setBatchMode(false);
+        this._canvas.syncPhantom?.();
+        // Throttle refreshConnections — expensive for 2000+ nodes
+        if (!this._forceTickRaf) {
+          this._forceTickRaf = requestAnimationFrame(() => {
+            this._forceTickRaf = null;
+            this._canvas?.refreshConnections();
+          });
+        }
+        // Show canvas and hide loader on first tick so user gets live feedback
+        if (!this._initialViewRestored) {
+          this._initialViewRestored = true;
+          this._hideLoader();
+          this._canvas.style.transition = 'opacity 0.2s ease-in';
+          this._canvas.style.opacity = '1';
+          // Only fitView on first tick if there's no focus= param to preserve
+          const _hashHasFocus = window.location.hash.includes('?') || window.location.hash.includes('focus=');
+          if (!_hashHasFocus) {
+            this._canvas.fitView();
+          }
+          // In continuous mode: restore hash navigation after initial convergence settles
+          setTimeout(() => {
+            const fullHash = window.location.hash;
+            const hasPath = /^#graph\//.test(fullHash);
+            const hasParams = fullHash.includes('?');
+            if (hasPath || hasParams) {
+              if (this._router) {
+                this._router.restoreFromHash(editor);
+              } else if (this._pgCanvasGraph) {
+                this._restoreFlatFocus();
+              }
+            }
+          }, 800);
+        }
+      };
+
+      this._forceLayout.onDone = (finalPositions) => {
+        if (!this._canvas) return;
+        this._forceTickRaf = null;
+
+        this._canvas.setBatchMode(true);
+        for (const [nodeId, pos] of Object.entries(finalPositions)) {
+          this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+        }
+        this._canvas.setBatchMode(false);
+        this._canvas.syncPhantom?.();
+        this._canvas.refreshConnections();
+        // Ensure canvas is visible and loader is gone
+        if (!this._initialViewRestored) {
+          this._initialViewRestored = true;
+          this._hideLoader();
+          this._canvas.style.transition = 'opacity 0.2s ease-in';
+          this._canvas.style.opacity = '1';
+        } else {
+          this._hideLoader();
+        }
+        // Restore focus/hash navigation now that all node positions are final
+        const fullHash = window.location.hash;
+        const hasPath = /^#graph\//.test(fullHash);
+        const hasParams = fullHash.includes('?');
+        if (hasPath || hasParams) {
+          if (this._router) {
+            this._router.restoreFromHash(editor);
+          } else if (this._pgCanvasGraph) {
+            this._restoreFlatFocus();
+          }
+        } else {
+          this._canvas.fitView();
+        }
+      };
+
+      this._setProgress(85, 'Simulating layout…', `${editorNodes.length} nodes · ${editorConns.length} edges`);
+      this._forceLayout.start({
+        nodes: forceNodes,
+        edges: forceEdges,
+        groups: groups || {},
+        options: {
+          chargeStrength: nodeCount > 500 ? -300 : -150,
+          linkDistance: nodeCount > 500 ? 100 : 150,
+          nodeWidth: 260,
+          nodeHeight: 40,
+          mode: 'continuous',
+          brownian: 0,
+        },
+      });
+
+      // Hook drag events to pin/unpin nodes in force simulation
+      // When user picks up a node → pin it (fix position in simulation)
+      // When user moves it → update pinned position (neighbors react)
+      // When user drops it → unpin (let simulation settle naturally)
+      editor.on('nodepicked', (node) => {
+        if (!this._forceLayout?.running) return;
+        const el = this._canvas?.getNodeView?.(node.id) || this._canvas?.querySelector(`[node-id="${node.id}"]`);
+        const pos = el?._position;
+        if (pos) {
+          this._forceLayout.pin(node.id, pos.x, pos.y);
+        }
+      });
+
+      editor.on('nodetranslated', ({ id, position }) => {
+        if (!this._forceLayout?.running) return;
+        this._forceLayout.pin(id, position.x, position.y);
+      });
+
+      editor.on('nodedragged', ({ id }) => {
+        this._wasDragged = true;
+        if (!this._forceLayout?.running) return;
+        this._forceLayout.unpin(id);
+      });
+
+      // Don't wait for ResizeObserver — we already started the worker above.
+      // Skip the rest of the Pass 1 initialization (pass 2 will be a no-op since
+      // _initialViewRestored will be true by the time ResizeObserver fires).
+    }
+
+
+
+    // Post-drill-in layout: recalculate inner node positions using real DOM sizes
+    // Pre-computed innerPositions use hardcoded nodeHeight which may not match actual rendered heights
+    // IMPORTANT: Must be registered BEFORE restoreFromHash, which may trigger drillDown on page refresh
+    if (!this._drillLayoutListener) {
+      this._drillLayoutListener = (e) => {
+        if (!this._canvas) return;
+        const enteredNode = e.detail?.node;
+        if (!enteredNode?._isSubgraph) return;
+        const innerEditor = enteredNode.getInnerEditor();
+        if (!innerEditor) return;
+
+        // Wait for inner nodes to render, then re-layout with measured sizes
+        requestAnimationFrame(() => {
+          requestAnimationFrame(() => {
+            const nodeSizes = this._canvas.measureNodeSizes();
+            if (!nodeSizes || Object.keys(nodeSizes).length === 0) return;
+
+            const corrected = computeAutoLayout(innerEditor, {
+              nodeSizes,
+              nodeHeight: 80,
+              gapY: 100,
+              gapX: 120,
+            });
+
+            this._canvas.setBatchMode(true);
+            for (const [nodeId, pos] of Object.entries(corrected)) {
+              this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+            }
+            this._canvas.setBatchMode(false);
+            this._canvas.refreshConnections();
+
+            if (window.location.hash.includes('focus=')) {
+              const searchStr = window.location.search || (window.location.hash.includes('?') ? window.location.hash.split('?')[1] : '');
+              const params = new URLSearchParams(searchStr);
+              const focusParam = params.get('focus');
+              if (focusParam && this._router) {
+                // Defer to allow DOM to settle, then fly to the correct newly measured position
+                requestAnimationFrame(() => this._router.navigateTo(decodeURIComponent(focusParam)));
+              }
+            } else if (this._canvas.fitView) {
+              requestAnimationFrame(() => this._canvas.fitView());
+            }
+          });
+        });
+      };
+      this._canvas.addEventListener('subgraph-enter', this._drillLayoutListener);
+    }
+
+    // Safety net: update URL on subgraph exit (back to root)
+    // SubgraphRouter's handleExit should handle this, but as defense-in-depth
+    if (!this._exitUrlListener) {
+      this._exitUrlListener = (e) => {
+        const level = e.detail?.level;
+        if (level === 0) {
+          // Exiting to root — extract parent directory from current URL to use as focus
+          const hash = window.location.hash;
+          const pathMatch = hash.match(/#graph\/([^?&]+)/);
+          if (pathMatch) {
+            let focusDir = pathMatch[1];
+            // Walk up to find known directory
+            if (this._dirNodeMap) {
+              const segments = focusDir.replace(/\/$/, '').split('/');
+              while (segments.length > 0) {
+                const candidate = segments.join('/') + '/';
+                if (this._dirNodeMap.has(candidate)) {
+                  focusDir = candidate;
+                  break;
+                }
+                segments.pop();
+              }
+            }
+            if (focusDir) {
+              this._updateHashParam('focus', focusDir);
+            } else {
+              this._updateHashParam('focus', null);
+            }
+          } else {
+            this._updateHashParam('focus', null);
+          }
+        }
+      };
+      this._canvas.addEventListener('subgraph-exit', this._exitUrlListener);
+    }
+
+    // NOTE: restoreFromHash is NOT called here (pass 1) because positions aren't stable yet.
+    // It will be called from _runRelayoutPass (pass 2) after node sizes are measured.
+
+    // Dedicated node ResizeObserver ensures that late inflation of inner ports
+    // triggers not only a line refresh, but initially schedules a full Pass 2 layout
+    // so things don't overlap vertically in a messy stack.
+    if (!this._nodeObserver) {
+      this._nodeObserver = new ResizeObserver((entries) => {
+          if (!this._canvas) return;
+          let needsRefresh = false;
+          for (const entry of entries) {
+            if (entry.target.tagName.toLowerCase() === 'graph-node') {
+              const el = entry.target;
+              const newW = entry.contentRect.width;
+              const newH = entry.contentRect.height;
+              
+              // Ignore culling-induced resizes (when contentVisibility: hidden makes dimensions 0)
+              if (newW === 0 || newH === 0) continue;
+              
+              // Ignore if the dimensions are practically identical to cached (allow up to 3px jitter for transform/zoom text rendering rounding)
+              if (el._cachedW && Math.abs(el._cachedW - newW) <= 3 && Math.abs(el._cachedH - newH) <= 3) {
+                continue;
+              }
+              
+              // Real resize detected! Update cache and flag refresh
+              el._cachedW = newW;
+              el._cachedH = newH;
+              needsRefresh = true;
+            }
+          }
+
+          if (needsRefresh) {
+          // Immediately secure connections
+          if (this._refreshRaf) cancelAnimationFrame(this._refreshRaf);
+          this._refreshRaf = requestAnimationFrame(() => this._canvas.refreshConnections());
+
+          // Trigger full layout recalculation debounced ONLY during initial load
+          if (!this._initialViewRestored) {
+            if (this._layoutPassTimer) clearTimeout(this._layoutPassTimer);
+            this._layoutPassTimer = setTimeout(() => {
+              this._runRelayoutPass(isStructured, dirFiles, dirNodeMap, editor, groups);
+            }, 150);
+          }
+        }
+      });
+    }
+
+    // Attach ResizeObserver to all graph-nodes
+    requestAnimationFrame(() => {
+      if (!this._canvas) return;
+      const nodes = this._canvas.querySelectorAll('graph-node');
+      for (const el of nodes) {
+        this._nodeObserver.observe(el);
+      }
+    });
+
+    // Provide the dynamic layout function which replaces the old static setTimeout
+    this._runRelayoutPass = (isStructured, dirFiles, dirNodeMap, editor, groups) => {
+      if (!this._canvas) return;
+      const nodeSizes = this._canvas.measureNodeSizes();
+      
+      let correctedPositions;
+      if (isStructured && dirFiles) {
+        const dirPaths = {};
+        const rootNodeIds = new Set(editor.getNodes().map(n => n.id));
+        for (const [dir, nodeId] of dirNodeMap.entries()) {
+          if (rootNodeIds.has(nodeId)) {
+            dirPaths[nodeId] = dir;
+          }
+        }
+        correctedPositions = computeTreeLayout(editor, {
+          dirPaths, nodeSizes,
+          nodeWidth: 250, nodeHeight: 100,
+          gapX: 40, gapY: 60,
+          startX: 60, startY: 60,
+        });
+      } else {
+        // FLAT mode: force-directed layout with group-aware circular initial positions
+        const editorNodes = [...editor.getNodes()];
+        const editorConns = [...editor.getConnections()];
+
+        // For small graphs, static AutoLayout is fast enough
+        if (editorNodes.length < 50) {
+          const layoutResult = computeAutoLayout(editor, {
+            groups, nodeSizes, existingPositions: this._canvas.getPositions()
+          });
+          correctedPositions = layoutResult.positions ? layoutResult.positions : layoutResult;
+        } else {
+          // ── Group-aware circular initial positions ──
+          // Instead of Sugiyama (vertical line), place groups in concentric rings.
+          // This gives the force simulation a balanced 2D starting point.
+          correctedPositions = {};
+          const groupEntries = groups ? Object.entries(groups) : [];
+          const totalNodes = editorNodes.length;
+
+          if (groupEntries.length > 1) {
+            // Place each group's centroid on a spiral, then fan members around it
+            const globalRadius = Math.sqrt(totalNodes) * 80;
+            let groupIdx = 0;
+            for (const [, memberIds] of groupEntries) {
+              const angle = (2 * Math.PI * groupIdx) / groupEntries.length;
+              const r = globalRadius * (0.3 + 0.7 * (groupIdx / groupEntries.length));
+              const cx = Math.cos(angle) * r;
+              const cy = Math.sin(angle) * r;
+
+              const memberRadius = Math.sqrt(memberIds.length) * 60;
+              for (let mi = 0; mi < memberIds.length; mi++) {
+                const mAngle = (2 * Math.PI * mi) / memberIds.length;
+                correctedPositions[memberIds[mi]] = {
+                  x: cx + Math.cos(mAngle) * memberRadius + (Math.random() - 0.5) * 20,
+                  y: cy + Math.sin(mAngle) * memberRadius + (Math.random() - 0.5) * 20,
+                };
+              }
+              groupIdx++;
+            }
+          }
+
+          // Fill any ungrouped nodes in a ring
+          for (const n of editorNodes) {
+            if (!correctedPositions[n.id]) {
+              const angle = Math.random() * 2 * Math.PI;
+              const r = Math.sqrt(totalNodes) * 50 + Math.random() * 200;
+              correctedPositions[n.id] = {
+                x: Math.cos(angle) * r,
+                y: Math.sin(angle) * r,
+              };
+            }
+          }
+
+          // Start force simulation. Apply circular seed BEFORE starting so there's no
+          // position race between the random seed write (below) and the first worker tick.
+          if (!this._forceLayout) {
+            const workerUrl = new URL('../vendor/symbiote-node/canvas/ForceWorker.js', import.meta.url).href;
+            this._forceLayout = new ForceLayout(workerUrl);
+          }
+
+          const forceNodes = editorNodes.map(n => ({
+            id: n.id,
+            x: correctedPositions[n.id]?.x ?? 0,
+            y: correctedPositions[n.id]?.y ?? 0,
+            group: groups ? Object.entries(groups).find(([, ids]) => ids.includes(n.id))?.[0] : null,
+            w: nodeSizes[n.id]?.w || n.params?.calculatedWidth || 260,
+            h: nodeSizes[n.id]?.h || n.params?.calculatedHeight || 60,
+          }));
+
+          const forceEdges = editorConns.map(c => ({
+            from: c.from,
+            to: c.to,
+          }));
+
+          // onTick: provide live visual feedback so user sees nodes spreading, not a freeze.
+          this._forceLayout.onTick = (tickPositions) => {
+            if (!this._canvas) return;
+            this._canvas.setBatchMode(true);
+            for (const [nodeId, pos] of Object.entries(tickPositions)) {
+              this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+            }
+            this._canvas.setBatchMode(false);
+            // Throttle connection refresh: expensive for large graphs
+            if (!this._forceTickRaf) {
+              this._forceTickRaf = requestAnimationFrame(() => {
+                this._forceTickRaf = null;
+                this._canvas?.refreshConnections();
+              });
+            }
+          };
+
+          this._forceLayout.onDone = (finalPositions) => {
+            if (!this._canvas) return;
+            this._forceTickRaf = null;
+
+            this._canvas.setBatchMode(true);
+            for (const [nodeId, pos] of Object.entries(finalPositions)) {
+              this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+            }
+            this._canvas.setBatchMode(false);
+            this._canvas.syncPhantom?.();
+            this._canvas.refreshConnections();
+            // Reveal canvas and fit view on convergence
+            if (!this._initialViewRestored) {
+              this._initialViewRestored = true;
+              const fullHash = window.location.hash;
+              const hasPath = /^#graph\//.test(fullHash);
+              const hasParams = fullHash.includes('?');
+              if (hasPath || hasParams) {
+                if (this._router) {
+                  this._router.restoreFromHash(editor);
+                } else if (this._pgCanvasGraph) {
+                  this._restoreFlatFocus();
+                }
+              } else {
+                this._canvas.fitView();
+              }
+              requestAnimationFrame(() => {
+                if (this._canvas) {
+                  this._hideLoader();
+                  this._canvas.style.transition = 'opacity 0.15s ease-in';
+                  this._canvas.style.opacity = '1';
+                }
+              });
+            } else {
+              this._canvas.fitView();
+            }
+          };
+
+          this._forceLayout.start({
+            nodes: forceNodes,
+            edges: forceEdges,
+            groups: groups || {},
+            options: {
+              chargeStrength: totalNodes > 500 ? -300 : -150,
+              linkDistance: totalNodes > 500 ? 100 : 150,
+            },
+          });
+
+          // BUG-FIX: Do NOT write correctedPositions to canvas here.
+          // The circular seed has already been applied to forceNodes above.
+          // Writing it now would overwrite the first worker tick with stale random positions.
+          return;
+        } // end if (editorNodes.length >= 50)
+      } // end outer else (flat/tree mode branch)
+
+
+
+
+      // Apply positions (only for non-force paths: small flat graphs and tree mode)
+      this._canvas.setBatchMode(true);
+      for (const [nodeId, pos] of Object.entries(correctedPositions)) {
+        this._canvas.setNodePosition(nodeId, pos.x, pos.y);
+      }
+      this._canvas.setBatchMode(false);
+
+      requestAnimationFrame(() => this._canvas.refreshConnections());
+
+      // Only restore view focus/drill-down once after first layout stabilizes
+      if (!this._initialViewRestored) {
+        this._initialViewRestored = true;
+
+        // restoreFromHash handles path, ?focus=, and ?in= params
+        const fullHash = window.location.hash;
+        const hasPath = /^#graph\//.test(fullHash);
+        const hasParams = fullHash.includes('?');
+        if (hasPath || hasParams) {
+          if (this._router) {
+            this._router.restoreFromHash(editor);
+          } else if (this._pgCanvasGraph) {
+            this._restoreFlatFocus();
+          }
+        } else {
+          this._canvas.fitView();
+        }
+
+
+
+        // Reveal canvas after layout is stable
+        requestAnimationFrame(() => {
+          if (this._canvas) {
+            this._hideLoader();
+            this._canvas.style.transition = 'opacity 0.15s ease-in';
+            this._canvas.style.opacity = '1';
+          }
+        });
+      }
+
+    };
+
+    // Failsafe: if the node dimensions were completely cached/synchronous and 
+    // ResizeObserver didn't have anything new to report, we trigger it once manually.
+    if (!this._failsafeTimer) {
+       this._failsafeTimer = setTimeout(() => {
+          if (!this._initialViewRestored && this._runRelayoutPass) {
+             this._runRelayoutPass(isStructured, dirFiles, dirNodeMap, editor, groups);
+          } else {
+             // Handle late layout updates for drilled views
+             if (window.location.hash.includes('focus=')) {
+               const searchStr = window.location.search || (window.location.hash.includes('?') ? window.location.hash.split('?')[1] : '');
+               const params = new URLSearchParams(searchStr);
+               const focusParam = params.get('focus');
+               if (focusParam && this._router) {
+                 this._router.navigateTo(decodeURIComponent(focusParam));
+               }
+             } else if (this._canvas.fitView) {
+               this._canvas.fitView();
+             }
+             this._canvas.refreshConnections();
+          }
+       }, 300);
+    }
+    // Phase 3: Directory frames (flat mode only)
+    // DISABLED: Zone group frames temporarily turned off
+    // if (!isStructured) this._addDirectoryFrames(editor, fileMap, dirFiles, positions);
+
+    // Store skeleton for Phase 2 pin resolution (flat mode only)
+    this._skeleton = skeleton;
+    this._pinExpansion?.clearPins();
+    if (!isStructured) {
+      if (!this._pinExpansion) {
+        this._pinExpansion = new PinExpansion(this._canvas, {
+          onPinClick: (pin, nodeId) => {
+            if (pin.file) {
+              state.activeFile = pin.file;
+              emit('file-selected', { path: pin.file, line: pin.line || 1 });
+            }
+          }
+        });
+      }
+      /*
+      if (!this._lodManager) {
+        this._lodManager = new LODManager(this._canvas, { threshold: 0.7 });
+        this._lodManager.onLodChange((lod) => {
+          this._pinExpansion?.applyLOD(lod);
+        });
+        this._lodManager.attach();
+      }
+      this._lodManager.update();
+      */
+      this._buildPinCache(skeleton, fileMap);
+    }
+
+    // Update stats
+    const stats = skeleton.s || {};
+    const viaCount = editor.getConnections().filter(c => c._via).length;
+    const statsEl = this.querySelector('.pcb-stats');
+    if (statsEl) {
+      statsEl.innerHTML = `
+        <span><span class="pcb-stat-val">${fileMap.size}</span> files</span>
+        <span><span class="pcb-stat-val">${stats.functions || 0}</span> fn</span>
+        <span><span class="pcb-stat-val">${stats.classes || 0}</span> cls</span>
+        <span><span class="pcb-stat-val">${editor.getConnections().length}</span> edges</span>
+        ${viaCount > 0 ? `<span><span class="pcb-stat-val">${viaCount}</span> vias</span>` : ''}
+      `;
+    }
+  }
+
+
+  /**
+   * Post-render reflow: measure actual DOM SubgraphNode sizes and re-position
+   * to eliminate overlaps. Uses a simple top-to-bottom column packing approach.
+   * @param {NodeEditor} editor
+   * @param {Object} initialPositions
+   */
+  _reflowStructuredNodes(editor, initialPositions) {
+    if (!this._canvas) return;
+
+    // Collect actual dimensions from DOM
+    const entries = [];
+    for (const node of editor.getNodes()) {
+      const el = this._canvas.getNodeView?.(node.id);
+      if (!el) continue;
+      const rect = el.getBoundingClientRect();
+      const zoom = this._canvas.$.zoom || 1;
+      // Convert screen dimensions to world-space
+      const w = rect.width / zoom;
+      const h = rect.height / zoom;
+      const pos = el._position || { x: 0, y: 0 };
+      entries.push({ id: node.id, x: pos.x, y: pos.y, w, h });
+    }
+
+    if (entries.length === 0) return;
+
+    // Sort by original Y position (preserve column ordering from AutoLayout)
+    entries.sort((a, b) => {
+      const dx = Math.abs(a.x - b.x);
+      // Same column if within 50px horizontally
+      if (dx < 50) return a.y - b.y;
+      return a.x - b.x;
+    });
+
+    // Group into columns (nodes within 50px x-distance = same column)
+    const GAP = 40; // px gap between nodes
+    const columns = [];
+    let currentCol = [entries[0]];
+    for (let i = 1; i < entries.length; i++) {
+      if (Math.abs(entries[i].x - currentCol[0].x) < 50) {
+        currentCol.push(entries[i]);
+      } else {
+        columns.push(currentCol);
+        currentCol = [entries[i]];
+      }
+    }
+    columns.push(currentCol);
+
+    // Reflow each column vertically
+    this._canvas.setBatchMode(true);
+    for (const col of columns) {
+      col.sort((a, b) => a.y - b.y);
+      let nextY = col[0].y;
+      for (const entry of col) {
+        if (entry.y < nextY) {
+          this._canvas.setNodePosition(entry.id, entry.x, nextY);
+          entry.y = nextY;
+        }
+        nextY = entry.y + entry.h + GAP;
+      }
+    }
+    this._canvas.setBatchMode(false);
+
+    if (this._router) {
+      this._router.restoreFromHash(editor);
+    } else if (this._pgCanvasGraph) {
+      this._restoreFlatFocus();
+    }
+    this._canvas.refreshConnections();
+    // Only fit the full view if no focus= was applied (focus already positions the viewport)
+    if (!window.location.hash.includes('focus=')) {
+      this._canvas.fitView();
+    }
+  }
+
+  /**
+   * Restore drill-down state from a path (directory or file).
+   * Finds the SubgraphNode whose params.path matches and drills in.
+   * @param {string} targetPath - e.g. 'src/core/' or 'src/core/parser.js'
+   * @param {NodeEditor} editor
+   * @returns {boolean}
+   */
+
+  // ── Phase 2: IC Chip Expansion ──
+
+  /**
+   * Build pin cache: for each file node, resolve its exported symbol names
+   * from skeleton.X (minified IDs) via skeleton.L (legend)
+   * @param {object} skeleton
+   * @param {Map<string, string>} fileMap
+   */
+  _buildPinCache(skeleton, fileMap) {
+    const X = skeleton.X || {};
+    const L = skeleton.L || {};
+    const n = skeleton.n || {};
+
+    // Build reverse legend: minifiedId → fullName
+    const revL = {};
+    for (const [minId, fullName] of Object.entries(L)) {
+      revL[minId] = fullName;
+    }
+
+    for (const [filePath, nodeId] of fileMap) {
+      const symbols = X[filePath] || [];
+      const pins = [];
+
+      for (const sym of symbols) {
+        // Phase 4: X entries can be {id, l} objects with line numbers or plain strings
+        const symId = typeof sym === 'object' ? sym.id : sym;
+        const line = typeof sym === 'object' ? sym.l : null;
+        const fullName = revL[symId] || symId;
+        // Determine kind: class or function
+        const nodeData = n[symId];
+        const kind = nodeData ? 'class' : 'fn';
+        pins.push({ name: fullName, kind, line, file: filePath });
+      }
+
+      // Also check classes that belong to this file (from skeleton.n)
+      for (const [id, data] of Object.entries(n)) {
+        if (data.f === filePath) {
+          const fullName = revL[id] || id;
+          // Avoid duplicates (already in X)
+          if (!pins.some(p => p.name === fullName)) {
+            pins.push({ name: fullName, kind: 'class', line: data.l || null, file: filePath });
+          }
+        }
+      }
+
+      if (pins.length > 0) {
+        this._pinExpansion?.setPins(nodeId, pins);
+      }
+    }
+  }
+
+
+
+  // ── Phase 3: Directory Frames & Via Markers ──
+
+  /** @type {string[]} Directory color palette — PCB silkscreen tones */
+  static DIR_COLORS = [
+    'rgba(200, 117, 51, 0.25)',  // copper
+    'rgba(212, 160, 74, 0.20)',  // gold
+    'rgba(100, 180, 120, 0.20)', // solder mask green
+    'rgba(80, 150, 200, 0.20)',  // blue layer
+    'rgba(160, 100, 200, 0.20)', // purple trace
+    'rgba(200, 80, 80, 0.20)',   // power layer red
+    'rgba(120, 200, 200, 0.20)', // teal
+    'rgba(200, 180, 80, 0.20)',  // yellow
+  ];
+
+  /**
+   * Create directory grouping frames from dirFiles map and node positions
+   * @param {NodeEditor} editor
+   * @param {Map<string, string>} fileMap
+   * @param {Map<string, string[]>} dirFiles
+   * @param {Object<string, {x: number, y: number}>} positions
+   */
+  _addDirectoryFrames(editor, fileMap, dirFiles, positions) {
+    if (!dirFiles || dirFiles.size < 2) return; // frames only useful with 2+ dirs
+
+    const padding = 30;
+    const nodeW = 120;
+    const nodeH = 80;
+    let colorIdx = 0;
+
+    for (const [dir, files] of dirFiles) {
+      if (files.length < 2) continue; // skip single-file dirs
+
+      // Compute bounding box of all nodes in this directory
+      let minX = Infinity, minY = Infinity, maxX = -Infinity, maxY = -Infinity;
+      let hasPositions = false;
+
+      for (const file of files) {
+        const nodeId = fileMap.get(file);
+        if (!nodeId) continue;
+        const pos = positions[nodeId];
+        if (!pos) continue;
+        hasPositions = true;
+
+        if (pos.x < minX) minX = pos.x;
+        if (pos.y < minY) minY = pos.y;
+        if (pos.x + nodeW > maxX) maxX = pos.x + nodeW;
+        if (pos.y + nodeH > maxY) maxY = pos.y + nodeH;
+      }
+
+      if (!hasPositions) continue;
+
+      // Create frame with padding
+      const dirLabel = dir.replace(/\/$/, '').split('/').pop() || 'root';
+      const color = DepGraph.DIR_COLORS[colorIdx % DepGraph.DIR_COLORS.length];
+      colorIdx++;
+
+      try {
+        const frame = new Frame(dirLabel, {
+          x: minX - padding,
+          y: minY - padding,
+          width: (maxX - minX) + padding * 2,
+          height: (maxY - minY) + padding * 2,
+          color,
+        });
+        editor.addFrame(frame);
+      } catch {
+        // Skip if frame creation fails
+      }
+    }
+  }
+
+  /**
+   * Toggle layer visibility
+   * @param {'zones'|'vias'} layer
+   * @param {boolean} visible
+   */
+  _toggleLayer(layer, visible) {
+    if (!this._canvas) return;
+
+    if (layer === 'zones') {
+      // Toggle all graph-frame elements
+      const frames = this._canvas.querySelectorAll('graph-frame');
+      for (const frame of frames) {
+        frame.style.display = visible ? '' : 'none';
+      }
+    } else if (layer === 'vias') {
+      // Toggle dash styling on via connections
+      // We use a data attribute on the canvas itself, CSS handles the rest
+      if (visible) {
+        this._canvas.removeAttribute('data-hide-vias');
+      } else {
+        this._canvas.setAttribute('data-hide-vias', '');
+      }
+    }
+  }
+
+  /**
+   * Handle agent tool events for autopilot mode
+   * @param {object} event
+   */
+  _handleAutopilot(event) {
+    if (!this._editor || !this._canvas) return;
+
+    const toolName = event.tool || event.name || '';
+    const args = event.args || {};
+
+    // tool:call events
+    if (event.phase === 'call' || event.type === 'tool:call') {
+      if (toolName === 'navigate' && args.action === 'expand' && args.symbol) {
+        this._focusSymbol(args.symbol);
+      } else if (toolName === 'navigate' && args.action === 'deps' && args.symbol) {
+        this._highlightDeps(args.symbol);
+      } else if (toolName === 'navigate' && args.action === 'call_chain') {
+        // Phase 4: animate call chain when agent traces a path
+        if (args.from && args.to) {
+          this._highlightCallChain(args.from, args.to);
+        }
+      } else if (toolName === 'navigate' && args.action === 'usages' && args.symbol) {
+        this._highlightDeps(args.symbol);
+      } else if (toolName === 'get_skeleton') {
+        this._canvas.fitView();
+      } else if (toolName === 'compact' && args.path) {
+        this._pulseFile(args.path);
+      } else if (toolName === 'view_file' && args.path) {
+        // Agent opened a file — focus it on the board
+        this._focusFile(args.path);
+        this._pulseFile(args.path);
+      }
+    }
+  }
+
+  // ── Phase 4: Camera Animation & Code Drill-down ──
+
+  /**
+   * Smooth camera animation to a node position
+   * @param {string} nodeId
+   * @param {number} [targetZoom=1]
+   * @param {number} [duration=400]
+   */
+  _animateToNode(nodeId, targetZoom = 1, duration = 400) {
+    if (!this._canvas) return;
+    const positions = this._canvas.getPositions();
+    const pos = positions[nodeId];
+    if (!pos) return;
+
+    const canvasRect = this._canvas.getBoundingClientRect();
+    const targetPanX = canvasRect.width / 2 - pos[0] * targetZoom;
+    const targetPanY = canvasRect.height / 2 - pos[1] * targetZoom;
+
+    const startZoom = this._canvas.$.zoom;
+    const startPanX = this._canvas.$.panX;
+    const startPanY = this._canvas.$.panY;
+    const startTime = performance.now();
+
+    const animate = (now) => {
+      const elapsed = now - startTime;
+      const t = Math.min(elapsed / duration, 1);
+      // Ease-out cubic
+      const ease = 1 - Math.pow(1 - t, 3);
+
+      this._canvas.$.zoom = startZoom + (targetZoom - startZoom) * ease;
+      this._canvas.$.panX = startPanX + (targetPanX - startPanX) * ease;
+      this._canvas.$.panY = startPanY + (targetPanY - startPanY) * ease;
+
+      if (t < 1) requestAnimationFrame(animate);
+    };
+
+    requestAnimationFrame(animate);
+  }
+
+  /**
+   * Focus on a file node with smooth animation
+   * @param {string} filePath
+   */
+  _focusFile(filePath) {
+    const nodeId = this._fileMap.get(filePath);
+    if (!nodeId) return;
+    this._animateToNode(nodeId, 1, 400);
+  }
+
+  /**
+   * Focus on a symbol (resolve to file first)
+   * @param {string} symbol
+   */
+  _focusSymbol(symbol) {
+    if (!this._skeleton) return;
+    // Try to find the file containing this symbol
+    for (const [key, data] of Object.entries(this._skeleton.n || {})) {
+      if (key === symbol && data.f) {
+        this._focusFile(data.f);
+        this._pulseFile(data.f);
+        return;
+      }
+    }
+  }
+
+  /**
+   * Highlight dependencies of a symbol with flow animation
+   * @param {string} symbol
+   */
+  _highlightDeps(symbol) {
+    if (!this._skeleton) return;
+    const data = (this._skeleton.n || {})[symbol];
+    if (!data?.f) return;
+
+    // Focus + pulse the main file
+    this._focusFile(data.f);
+    this._pulseFile(data.f);
+
+    // Highlight connections from this file
+    const nodeId = this._fileMap.get(data.f);
+    if (!nodeId) return;
+
+    const connections = this._editor.getConnections()
+      .filter(c => c.from === nodeId || c.to === nodeId);
+
+    for (const conn of connections) {
+      this._canvas.setFlowing(conn.id, true);
+    }
+
+    // Stop flow animation after 3 seconds
+    setTimeout(() => {
+      for (const conn of connections) {
+        this._canvas.setFlowing(conn.id, false);
+      }
+    }, 3000);
+  }
+
+  /**
+   * Highlight a call chain: animate sequential connection flow from source to target
+   * @param {string} fromSymbol
+   * @param {string} toSymbol
+   */
+  _highlightCallChain(fromSymbol, toSymbol) {
+    if (!this._skeleton) return;
+
+    // Resolve files
+    const fromData = (this._skeleton.n || {})[fromSymbol];
+    const toData = (this._skeleton.n || {})[toSymbol];
+    const fromFile = fromData?.f;
+    const toFile = toData?.f;
+    if (!fromFile || !toFile) return;
+
+    const fromId = this._fileMap.get(fromFile);
+    const toId = this._fileMap.get(toFile);
+    if (!fromId || !toId) return;
+
+    // Find shortest path via BFS on connection graph
+    const adj = new Map();
+    for (const conn of this._editor.getConnections()) {
+      if (!adj.has(conn.from)) adj.set(conn.from, []);
+      adj.get(conn.from).push({ to: conn.to, connId: conn.id });
+    }
+
+    const visited = new Set([fromId]);
+    const queue = [[fromId, []]];
+    let path = null;
+
+    while (queue.length > 0) {
+      const [current, connPath] = queue.shift();
+      if (current === toId) {
+        path = connPath;
+        break;
+      }
+      for (const edge of (adj.get(current) || [])) {
+        if (!visited.has(edge.to)) {
+          visited.add(edge.to);
+          queue.push([edge.to, [...connPath, edge.connId]]);
+        }
+      }
+    }
+
+    if (!path || path.length === 0) return;
+
+    // Focus on source node first
+    this._animateToNode(fromId, 0.8, 300);
+
+    // Animate flow along the path sequentially
+    const stepDuration = 800;
+    path.forEach((connId, idx) => {
+      setTimeout(() => {
+        this._canvas.setFlowing(connId, true);
+      }, idx * stepDuration);
+    });
+
+    // Stop all flow after chain completes + hold time
+    setTimeout(() => {
+      for (const connId of path) {
+        this._canvas.setFlowing(connId, false);
+      }
+      // Pan to destination
+      this._animateToNode(toId, 1, 400);
+      this._pulseFile(toFile);
+    }, path.length * stepDuration + 1000);
+  }
+
+  /**
+   * Pulse a file node (brief highlight)
+   * @param {string} filePath
+   */
+  _pulseFile(filePath) {
+    const nodeId = this._fileMap.get(filePath);
+    if (!nodeId) return;
+    this._canvas.highlightTrace([{ nodeId }], 200);
+  }
+}
+
+DepGraph.rootStyles = PCB_CSS;
+DepGraph.reg('pg-dep-graph');