project-graph-mcp 2.1.2 → 2.1.4

package/GUIDE.md

@@ -0,0 +1,237 @@
+# Project Graph MCP — Usage Guide
+
+## Quick Start Workflow
+1. `get_ai_context({ path: "src/" })` → boot AI context (skeleton + docs)
+2. `get_focus_zone({ recentFiles: ["src/parser.js"] })` → enriched context for area of interest
+3. Make code changes
+4. `invalidate_cache()` → always after edits
+5. `analyze({ action: "analysis_summary", path: "src/" })` → verify quality
+
+## Two-Tier Context Model
+Project Graph MCP operates on a dual-layer context model designed for token efficiency and high context awareness:
+- **Skeleton (Overview)**: Provides a high-level map of the whole project (2-5K tokens). It includes file paths, exported symbols, and structural relationships without the implementation details.
+- **Focus Zone (Detailed)**: When drilling into specific areas, agents receive the full context for those files (1-3K tokens per file), including implementation and associated `.ctx` documentation.
+
+The key insight: agents read the whole project cheaply via the skeleton, then drill into specific files with full context when needed.
+
+## Navigation
+Use the `navigate` tool to explore the codebase structure and dependencies.
+
+```javascript
+// Expand a specific symbol to see its definition
+navigate({ action: "expand", symbol: "MyClass" });
+
+// Find where a specific file or symbol is imported/used
+navigate({ action: "usages", path: "src/parser.js" });
+
+// Get dependencies of a specific file
+navigate({ action: "deps", path: "src/core/workspace.js" });
+
+// Trace the call chain for a function
+navigate({ action: "call_chain", symbol: "processData" });
+
+// List sub-projects or modules
+navigate({ action: "sub_projects" });
+```
+
+## Analysis
+Use the `analyze` tool to inspect code quality, find issues, and gather metrics.
+
+```javascript
+// Get a comprehensive summary of codebase health
+analyze({ action: "analysis_summary", path: "src/" });
+
+// Find dead or unused code
+analyze({ action: "dead_code", path: "src/" });
+
+// Detect potentially duplicate or similar functions
+analyze({ action: "similar_functions", path: "src/" });
+
+// Identify complex files requiring refactoring
+analyze({ action: "complexity", path: "src/" });
+
+// Find unusually large files
+analyze({ action: "large_files", path: "src/" });
+
+// Check for outdated framework patterns
+analyze({ action: "outdated_patterns", path: "src/" });
+
+// Find undocumented code blocks
+analyze({ action: "undocumented", path: "src/" });
+
+// Run a full suite of analysis checks
+analyze({ action: "full_analysis", path: "src/" });
+```
+
+## Compact Code
+Use the `compact` tool to compress and expand codebase files, enforce compact mode standards, and configure how code is presented to the AI.
+
+### Compact Mode Standards
+Compact mode enforces 5 style rules for maximum token efficiency:
+- **`missing-ctx-header`**: Every `.js` file must start with `// @ctx .context/path/to/file.ctx`
+- **`missing-ctx-file`**: Every `.js` file must have a corresponding `.ctx` documentation file
+- **`multi-line-imports`**: All imports must be on a single line
+- **`indented-lines`**: No indentation — all code must be flat (terser-minified)
+- **`long-names`**: All identifiers (const/let/var/function) must be ≤2 chars — `.ctx` provides readability
+- **`incomplete-ctx`**: Every export must be documented in `.ctx`, no `{DESCRIBE}` placeholders allowed
+
+### .pgignore
+File exclusions are configured via `.pgignore` (created automatically if missing):
+```
+# Third-party vendored code
+vendor/
+
+# Generated files
+.context/
+.expanded/
+```
+
+### Bidirectional Workflow
+The compact pipeline works in both directions:
+1. **Compact (fix:true)**: Parses readable code → generates `.ctx` with full signatures → minifies with terser
+2. **Expand**: Reads `.ctx` → restores JSDoc, readable names, and formatting
+
+```javascript
+// Validate compact mode compliance (read-only check)
+compact({ action: "validate_pipeline", path: "." });
+
+// Auto-fix all style violations + generate .ctx documentation
+compact({ action: "validate_pipeline", path: ".", fix: true });
+
+// Compact a single file
+compact({ action: "compact_file", path: "src/parser.js" });
+
+// Apply a targeted edit to a compacted file
+compact({ action: "edit", path: "src/parser.js", symbol: "parseFile", code: "..." });
+
+// Compact all files in a directory
+compact({ action: "compact_all", path: "src/" });
+
+// Format and beautify a file
+compact({ action: "beautify", path: "src/index.js" });
+
+// Expand a previously compacted file to its full content
+compact({ action: "expand_file", path: "src/parser.js" });
+
+// Expand the entire project back to full source
+compact({ action: "expand_project" });
+
+// Get current compaction mode settings
+compact({ action: "get_mode" });
+
+// Set compaction mode: 1 (compact, recommended) or 2 (full)
+compact({ action: "set_mode", mode: 1 });
+```
+
+## Documentation (.ctx)
+Use the `docs` tool to manage and interact with project context (`.ctx`) files.
+
+```javascript
+// Get documentation for a specific file
+docs({ action: "get", path: "src/core/workspace.js" });
+
+// Generate missing documentation for a directory
+docs({ action: "generate", path: "src/utils/" });
+
+// Check for stale or outdated documentation
+docs({ action: "check_stale", path: "src/" });
+
+// Validate interface and API contracts
+docs({ action: "validate_contracts", path: "src/" });
+```
+
+## Database Analysis
+Use the `db` tool to analyze database schemas and queries within the code.
+
+```javascript
+// Extract the inferred database schema
+db({ action: "schema", path: "src/" });
+
+// Find where specific database tables are accessed
+db({ action: "table_usage", table: "users" });
+
+// Identify defined tables that are never queried
+db({ action: "dead_tables", path: "src/" });
+```
+
+## Testing
+Use the `testing` tool to manage and track test states and annotations.
+
+```javascript
+// List tests marked as pending or TODO
+testing({ action: "pending", path: "tests/" });
+
+// Mark specific tests as passing
+testing({ action: "pass", testIds: ["test-123"] });
+
+// Mark specific tests as failing
+testing({ action: "fail", testIds: ["test-456"] });
+
+// Get a summary of current test statuses
+testing({ action: "summary", path: "tests/" });
+
+// Reset all test statuses
+testing({ action: "reset" });
+```
+
+## JSDoc
+Use the `jsdoc` tool to manage JSDoc comments and type annotations.
+
+```javascript
+// Check for inconsistencies between JSDoc and actual code
+jsdoc({ action: "check_consistency", path: "src/" });
+
+// Validate JSDoc types
+jsdoc({ action: "check_types", path: "src/" });
+
+// Generate missing JSDoc comments
+jsdoc({ action: "generate", path: "src/core/" });
+```
+
+## Filters
+Use the `filters` tool to configure which files the MCP server includes or ignores.
+
+```javascript
+// Get current active filters
+filters({ action: "get" });
+
+// Set specific inclusion/exclusion patterns
+filters({ action: "set", includes: ["src/**/*.js"], excludes: ["tests/"] });
+
+// Add patterns to the exclusion list
+filters({ action: "add_excludes", patterns: ["dist/", "build/"] });
+
+// Remove patterns from the exclusion list
+filters({ action: "remove_excludes", patterns: ["tests/"] });
+
+// Reset filters to default
+filters({ action: "reset" });
+```
+
+## Custom Rules
+Manage custom linting or architectural rules specific to the project.
+
+```javascript
+// Retrieve all custom rules
+get_custom_rules();
+
+// Define a new custom rule
+set_custom_rule({ name: "no-console", description: "Disallow console.log", pattern: "console\\.log" });
+
+// Check codebase against defined custom rules
+check_custom_rules({ path: "src/" });
+```
+
+## Self-Discovery Tools
+Agents can use these tools to learn about the workspace and available workflows.
+
+```javascript
+// Read a specific section of this usage guide
+get_usage_guide({ topic: "navigation" });
+
+// Retrieve project-specific coding guidelines and agent rules
+get_agent_instructions();
+
+// Fetch framework or library documentation referenced in the project
+get_framework_reference({ path: "src/" });
+```

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "project-graph-mcp",
-  "version": "2.1.2",
+  "version": "2.1.4",
   "type": "module",
   "description": "MCP server for AI agents — project graph, code quality analysis, visual web explorer. JS, TS, Python, Go.",
   "main": "src/network/server.js",
@@ -13,6 +13,7 @@
     "vendor/",
     "rules/",
     "docs/",
+    "GUIDE.md",
     "CONFIGURATION.md",
     "README.md",
     "LICENSE"

package/rules/test-rules.json

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+{
+  "name": "test-rules",
+  "description": "Custom rules for test-rules",
+  "rules": [
+    {
+      "id": "no-console",
+      "name": "No Console",
+      "description": "Disallow console.log",
+      "pattern": "console\\.log",
+      "patternType": "regex",
+      "severity": "warning",
+      "filePattern": "*.js"
+    }
+  ]
+}

package/src/.project-graph-cache.json

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package/src/analysis/analysis-cache.js

@@ -1,5 +1,7 @@
 // @ctx .context/src/analysis/analysis-cache.ctx
-import{readFileSync as t,writeFileSync as e,mkdirSync as n,existsSync as r}from"fs";import{join as c,dirname as a}from"path";import{createHash as i}from"crypto";
+import{readFileSync as t,writeFileSync as e,mkdirSync as n,existsSync as r}from"fs";
+import{join as c,dirname as a}from"path";
+import{createHash as i}from"crypto";
 export function computeContentHash(t){return i("md5").update(t).digest("hex").slice(0,8)}
 export function getCachePath(t,e){const n=e.replace(/\.[^.]+$/,".json");return c(t,".cache",n)}
 export function readCache(e,n){const c=getCachePath(e,n);try{return r(c)?JSON.parse(t(c,"utf-8")):null}catch(t){return null}}

package/src/analysis/complexity.js

@@ -1,14 +1,10 @@
 // @ctx .context/src/analysis/complexity.ctx
-import{readFileSync as t,readdirSync as e,statSync as i}from"fs";import{join as n,relative as o,resolve as r}from"path";import{parse as a}from"../../vendor/acorn.mjs";import*as l from"../../vendor/walk.mjs";import{shouldExcludeDir as s,shouldExcludeFile as c,parseGitignore as m}from"../core/filters.js";function findJSFiles(t,r=t){t===r&&m(r);
-const a=[];try{for(const l of e(t)){const e=n(t,l),m=o(r,e);i(e).isDirectory()?s(l,m)||a.push(...findJSFiles(e,r)):!l.endsWith(".js")||l.endsWith(".css.js")||l.endsWith(".tpl.js")||c(l,m)||a.push(e)}}catch(t){}return a}
-function calculateComplexity(t){let e=1;return l.simple(t,{IfStatement(){e++},ConditionalExpression(){e++},ForStatement(){e++},ForOfStatement(){e++},ForInStatement(){e++},WhileStatement(){e++},DoWhileStatement(){e++},SwitchCase(t){t.test&&e++},LogicalExpression(t){"&&"!==t.operator&&"||"!==t.operator||e++},BinaryExpression(t){"??"===t.operator&&e++},CatchClause(){e++}}),e}
-function getRating(t){return t<=5?"low":t<=10?"moderate":t<=20?"high":"critical"}
-export function analyzeComplexityFile(t,e){const i=[];
-let n;try{n=a(t,{ecmaVersion:"latest",sourceType:"module",locations:!0})}catch(t){return i}return l.simple(n,{FunctionDeclaration(t){if(!t.id)return;
-const n=calculateComplexity(t.body);i.push({name:t.id.name,type:"function",file:e,line:t.loc.start.line,complexity:n,rating:getRating(n)})},ArrowFunctionExpression(t){if("BlockStatement"!==t.body.type)return;
-const n=calculateComplexity(t.body);n>5&&i.push({name:"(arrow)",type:"function",file:e,line:t.loc.start.line,complexity:n,rating:getRating(n)})},MethodDefinition(t){if("method"!==t.kind)return;
-const n=t.key.name||t.key.value,o=calculateComplexity(t.value.body);i.push({name:n,type:"method",file:e,line:t.loc.start.line,complexity:o,rating:getRating(o)})}}),i}
-function analyzeFile(e,i){let n;try{n=t(e,"utf-8")}catch(t){return[]}return analyzeComplexityFile(n,o(i,e))}
-export async function getComplexity(t,e={}){const i=e.minComplexity||1,n=e.onlyProblematic||!1,o=r(t),a=findJSFiles(t);
-let l=[];for(const t of a)l.push(...analyzeFile(t,o));l=l.filter(t=>!(t.complexity<i||n&&("low"===t.rating||"moderate"===t.rating))),l.sort((t,e)=>e.complexity-t.complexity);
-const s={low:l.filter(t=>"low"===t.rating).length,moderate:l.filter(t=>"moderate"===t.rating).length,high:l.filter(t=>"high"===t.rating).length,critical:l.filter(t=>"critical"===t.rating).length,average:l.length>0?Math.round(l.reduce((t,e)=>t+e.complexity,0)/l.length*10)/10:0};return{total:l.length,stats:s,items:l.slice(0,30)}}
+import{readFileSync as t,readdirSync as e,statSync as o}from"fs";import{join as n,relative as r,resolve as i}from"path";import{parse as a}from"../../vendor/acorn.mjs";
+import*as l from"../../vendor/walk.mjs";
+import{shouldExcludeDir as s,shouldExcludeFile as c,parseGitignore as m}from"../core/filters.js";
+function p(t,i=t){t===i&&m(i);const a=[];try{for(const l of e(t)){const e=n(t,l),m=r(i,e);o(e).isDirectory()?s(l,m)||a.push(...p(e,i)):!l.endsWith(".js")||l.endsWith(".css.js")||l.endsWith(".tpl.js")||c(l,m)||a.push(e)}}catch(t){}return a}
+function u(t){let e=1;return l.simple(t,{IfStatement(){e++},ConditionalExpression(){e++},ForStatement(){e++},ForOfStatement(){e++},ForInStatement(){e++},WhileStatement(){e++},DoWhileStatement(){e++},SwitchCase(t){t.test&&e++},LogicalExpression(t){"&&"!==t.operator&&"||"!==t.operator||e++},BinaryExpression(t){"??"===t.operator&&e++},CatchClause(){e++}}),e}
+function h(t){return t<=5?"low":t<=10?"moderate":t<=20?"high":"critical"}
+export function analyzeComplexityFile(t,e){const o=[];let n;try{n=a(t,{ecmaVersion:"latest",sourceType:"module",locations:!0})}catch(t){return o}return l.simple(n,{FunctionDeclaration(t){if(!t.id)return;const n=u(t.body);o.push({name:t.id.name,type:"function",file:e,line:t.loc.start.line,complexity:n,rating:h(n)})},ArrowFunctionExpression(t){if("BlockStatement"!==t.body.type)return;const n=u(t.body);n>5&&o.push({name:"(arrow)",type:"function",file:e,line:t.loc.start.line,complexity:n,rating:h(n)})},MethodDefinition(t){if("method"!==t.kind)return;const n=t.key.name||t.key.value,r=u(t.value.body);o.push({name:n,type:"method",file:e,line:t.loc.start.line,complexity:r,rating:h(r)})}}),o}
+function f(e,o){let n;try{n=t(e,"utf-8")}catch(t){return[]}return analyzeComplexityFile(n,r(o,e))}
+export async function getComplexity(t,e={}){const o=e.minComplexity||1,n=e.onlyProblematic||!1,r=i(t),a=p(t);let l=[];for(const t of a)l.push(...f(t,r));l=l.filter(t=>!(t.complexity<o||n&&("low"===t.rating||"moderate"===t.rating))),l.sort((t,e)=>e.complexity-t.complexity);const s={low:l.filter(t=>"low"===t.rating).length,moderate:l.filter(t=>"moderate"===t.rating).length,high:l.filter(t=>"high"===t.rating).length,critical:l.filter(t=>"critical"===t.rating).length,average:l.length>0?Math.round(l.reduce((t,e)=>t+e.complexity,0)/l.length*10)/10:0};return{total:l.length,stats:s,items:l.slice(0,30)}}