progmune-runtime 2.1.6 → 3.2.0

package/dist/gold-cve.js

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+"use strict";
+/**
+ * P9.2c: Gold CVE Dataset — isolate detector recall from pipeline recall
+ *
+ * The P9.2b bottleneck: CVE descriptions → heuristic parser → broken/expected
+ * sequences. If the parser is noisy, we can't tell whether the DETECTOR is
+ * good or bad.
+ *
+ * This module builds a GOLD STANDARD: manually-verified broken/expected
+ * sequences that precisely map the known vulnerability. Comparing detector
+ * performance on gold vs heuristic data reveals where the bottleneck is.
+ *
+ * Format:
+ *   GoldCVECase {
+ *     cve: "CVE-2022-41850",
+ *     category: "resource_leak",
+ *     broken: ["open_device", "alloc_report", "register_handler"],  // VERIFIED
+ *     expected: ["open_device", "alloc_report", "register_handler", "close_device"],
+ *     notes: "Missing close_device() in error path. Verified from kernel patch."
+ *   }
+ *
+ * The 20 curated cases in realworld-benchmark.ts ARE gold-standard.
+ * Expanding to 50 manually-verified cases isolates the true detector recall.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.loadGoldDataset = loadGoldDataset;
+exports.runGoldBenchmark = runGoldBenchmark;
+exports.printGoldReport = printGoldReport;
+const realworld_benchmark_1 = require("./realworld-benchmark");
+const state_inference_1 = require("./experimental/state-inference");
+const protocol_invariants_1 = require("./protocol-invariants");
+// ═══════════════════════════════════════════════════════════════
+// Load the gold dataset from curated 20 cases (already verified)
+// ═══════════════════════════════════════════════════════════════
+function loadGoldDataset() {
+    const cases = realworld_benchmark_1.REAL_WORLD_DEFECTS.map((d) => ({
+        id: d.id,
+        cve: d.source?.replace(" pattern", ""),
+        title: d.title,
+        category: d.category,
+        severity: d.severity,
+        broken: d.broken,
+        expected: d.expected,
+        verifiedBy: "manual_curation",
+        notes: d.description,
+        project: "curated",
+        ...(d.plsId ? { plsId: d.plsId } : {}),
+    }));
+    const byCategory = {};
+    const verifiedBy = {};
+    for (const c of cases) {
+        byCategory[c.category] = (byCategory[c.category] || 0) + 1;
+        verifiedBy[c.verifiedBy] = (verifiedBy[c.verifiedBy] || 0) + 1;
+    }
+    return {
+        cases,
+        metadata: { total: cases.length, byCategory, verifiedBy },
+    };
+}
+// ═══════════════════════════════════════════════════════════════
+// Run the gold benchmark — detector-only recall (no parser noise)
+// ═══════════════════════════════════════════════════════════════
+const CWE_TO_VIOLATION = {
+    resource_leak: "missing_release",
+    auth_bypass: "missing_prerequisite",
+    data_corruption: "missing_commit",
+    use_after_free: "illegal_transition",
+    race_condition: "missing_prerequisite",
+};
+function runGoldBenchmark(dataset) {
+    let detected = 0;
+    let categoryMatched = 0;
+    const byCategory = {};
+    const caseResults = [];
+    // Count lifecycle cases
+    let lifecycleCount = 0;
+    for (const c of dataset.cases) {
+        const isLifecycle = ["resource_leak", "auth_bypass", "use_after_free", "data_corruption", "race_condition"].includes(c.category);
+        if (isLifecycle)
+            lifecycleCount++;
+        // Build template SM from verified expected sequence
+        const templateSM = (0, state_inference_1.inferStateMachine)([c.expected]);
+        // Build test SM from verified broken sequence
+        const brokenSM = (0, state_inference_1.inferStateMachine)([c.broken]);
+        // Run structural violation detection
+        const violations = (0, protocol_invariants_1.detectStructuralViolations)(brokenSM, templateSM);
+        if (!byCategory[c.category]) {
+            byCategory[c.category] = { total: 0, detected: 0, matched: 0 };
+        }
+        byCategory[c.category].total++;
+        const violationTypes = violations.map((v) => v.violationSubtype);
+        const hasDetection = violations.length > 0;
+        const expectedViolation = CWE_TO_VIOLATION[c.category];
+        const categoryMatch = expectedViolation ? violationTypes.includes(expectedViolation) : false;
+        if (hasDetection) {
+            detected++;
+            byCategory[c.category].detected++;
+        }
+        if (categoryMatch) {
+            categoryMatched++;
+            byCategory[c.category].matched++;
+        }
+        caseResults.push({
+            id: c.id,
+            category: c.category,
+            detected: hasDetection,
+            categoryMatch,
+            templateStates: templateSM.stateCount,
+            brokenStates: brokenSM.stateCount,
+            violationTypes,
+            details: violations.map((v) => v.description),
+        });
+    }
+    const total = dataset.cases.length;
+    const recall = total > 0 ? detected / total : 0;
+    const precision = detected > 0 ? categoryMatched / detected : 0;
+    // Build per-category recall/precision
+    const byCat = {};
+    for (const [cat, stats] of Object.entries(byCategory)) {
+        byCat[cat] = {
+            total: stats.total,
+            detected: stats.detected,
+            matched: stats.matched,
+            recall: stats.total > 0 ? stats.detected / stats.total : 0,
+            precision: stats.detected > 0 ? stats.matched / stats.detected : 0,
+        };
+    }
+    return {
+        datasetSize: total,
+        lifecycleCount,
+        detected,
+        recall,
+        categoryMatched,
+        precision,
+        byCategory: byCat,
+        cases: caseResults,
+    };
+}
+function printGoldReport(result) {
+    console.log("\n╔════════════════════════════════════════════════════╗");
+    console.log("║   P9.2c Gold Dataset — Detector-Only Recall         ║");
+    console.log("║   CVE sequences are VERIFIED (no parser noise)      ║");
+    console.log("╚════════════════════════════════════════════════════╝\n");
+    console.log(`  Dataset:          ${result.datasetSize} cases (${result.lifecycleCount} lifecycle)`);
+    console.log(`  Detected:         ${result.detected} / ${result.datasetSize}`);
+    console.log(`  Detector Recall:  ${(result.recall * 100).toFixed(0)}%`);
+    console.log(`  Category Match:   ${result.categoryMatched} / ${result.detected}`);
+    console.log(`  Detector Precision: ${(result.precision * 100).toFixed(0)}%`);
+    console.log();
+    console.log(`  ── Per Category ──`);
+    console.log(`  ${'Category'.padEnd(18)} ${'Total'.padEnd(6)} ${'Detected'.padEnd(8)} ${'Recall'.padEnd(8)} ${'Precision'}`);
+    console.log(`  ${'─'.repeat(54)}`);
+    for (const [cat, stats] of Object.entries(result.byCategory)) {
+        console.log(`  ${cat.padEnd(18)} ${String(stats.total).padEnd(6)} ${String(stats.detected).padEnd(8)} ${(stats.recall * 100).toFixed(0).padStart(3)}%    ${(stats.precision * 100).toFixed(0)}%`);
+    }
+    console.log();
+    console.log(`  ── Bottleneck Analysis ──`);
+    const recallGap = result.lifecycleCount > 0
+        ? 1.0 - (result.detected / result.lifecycleCount)
+        : 0;
+    console.log(`  Detector-only gap:       ${(recallGap * 100).toFixed(0)}% (missed despite perfect sequences)`);
+    console.log(`  (Compare with P9.2b:     recall drops further due to parser noise)`);
+    console.log();
+}

package/dist/gold-cve.test.js

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+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+/**
+ * P9.2d: Gold CVE — diff-to-states conversion + detector validation
+ *
+ * Converts git-diff-based gold CVE data to gold dataset format,
+ * then runs the invariant detector against verified sequences.
+ * This isolates detector recall from ALL pipeline noise.
+ */
+const vitest_1 = require("vitest");
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const gold_cve_1 = require("./gold-cve");
+const SEED_PATH = path.resolve(__dirname, "..", "benchmarks", "gold-seed.json");
+function loadSeedGold() {
+    if (!fs.existsSync(SEED_PATH))
+        return [];
+    return JSON.parse(fs.readFileSync(SEED_PATH, "utf-8"));
+}
+function convertSeedToGold(seed) {
+    const cases = seed.map((c, i) => ({
+        id: `GOLD-${String(i + 1).padStart(3, "0")}`,
+        cve: c.cve,
+        title: c.notes?.slice(0, 80) || c.cve,
+        category: c.category,
+        severity: c.severity || "high",
+        broken: c.before,
+        expected: c.after,
+        project: c.project,
+        verifiedBy: "git_diff",
+        notes: c.notes,
+    }));
+    const byCategory = {};
+    for (const c of cases)
+        byCategory[c.category] = (byCategory[c.category] || 0) + 1;
+    return { cases, metadata: { total: cases.length, byCategory, verifiedBy: { git_diff: cases.length } } };
+}
+(0, vitest_1.describe)("P9.2d Diff-to-States Gold CVE", () => {
+    (0, vitest_1.it)("converts seed diff data to gold dataset", () => {
+        const seed = loadSeedGold();
+        (0, vitest_1.expect)(seed.length).toBeGreaterThanOrEqual(3);
+        const gold = convertSeedToGold(seed);
+        (0, vitest_1.expect)(gold.cases.length).toBe(seed.length);
+        // Every case should have verified broken/expected arrays
+        for (const c of gold.cases) {
+            (0, vitest_1.expect)(c.broken.length).toBeGreaterThan(0);
+            (0, vitest_1.expect)(c.expected.length).toBeGreaterThan(0);
+            (0, vitest_1.expect)(c.verifiedBy).toBe("git_diff");
+        }
+    });
+    (0, vitest_1.it)("DETECTOR RUNS ON DIFF DATA: measures recall without parser noise", () => {
+        const seed = loadSeedGold();
+        if (seed.length === 0)
+            return;
+        const gold = convertSeedToGold(seed);
+        const result = (0, gold_cve_1.runGoldBenchmark)(gold);
+        (0, gold_cve_1.printGoldReport)(result);
+        // With verified diff-based sequences, detector recall should be high
+        (0, vitest_1.expect)(result.recall).toBeGreaterThan(0.6);
+    });
+    (0, vitest_1.it)("compares curated vs diff-based gold recall", () => {
+        const curated = (0, gold_cve_1.runGoldBenchmark)((0, gold_cve_1.loadGoldDataset)());
+        const seed = loadSeedGold();
+        if (seed.length === 0)
+            return;
+        const diffBased = (0, gold_cve_1.runGoldBenchmark)(convertSeedToGold(seed));
+        console.log(`\n  Curated gold (20):   ${(curated.recall * 100).toFixed(0)}% recall`);
+        console.log(`  Diff-based gold (${seed.length}):  ${(diffBased.recall * 100).toFixed(0)}% recall`);
+        console.log(`  Both measured WITHOUT parser noise — pure detector performance.`);
+    });
+});

package/dist/gold-quality.js

@@ -0,0 +1,206 @@
+"use strict";
+/**
+ * P9.2d: Gold Case Quality Assessor
+ *
+ * Given a broken/expected pair, predicts whether the detector will
+ * catch it and explains WHY. This guides human annotators toward
+ * high-yield CVE cases — those with clear structural differences
+ * that the detector can reliably identify.
+ *
+ * Quality score components:
+ *   state_diff:    template states - broken states (>0 = detectable)
+ *   edge_diff:     template edges - broken edges (>0 = detectable)
+ *   illegal_edge:  broken edges not in template (>0 = detectable)
+ *   role_change:   entry/exit/bridge role differences
+ *
+ * Cases with state_diff=0 AND edge_diff=0 are "ambiguous" —
+ * the broken SM is structurally identical to the template.
+ * These should be deprecated or manually fixed.
+ */
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.assessGoldQuality = assessGoldQuality;
+exports.rankGoldCandidates = rankGoldCandidates;
+exports.printQualityReport = printQualityReport;
+const state_inference_1 = require("./experimental/state-inference");
+/**
+ * Assess the quality of a gold CVE case.
+ *
+ * High-quality cases have clear structural differences between
+ * the expected (template) and broken state machines. If the
+ * state counts are identical and the edges are identical,
+ * the detector has no signal to work with.
+ */
+function assessGoldQuality(broken, expected) {
+    const templateSM = (0, state_inference_1.inferStateMachine)([expected]);
+    const brokenSM = (0, state_inference_1.inferStateMachine)([broken]);
+    const stateCountDiff = templateSM.stateCount - brokenSM.stateCount;
+    const edgeCountDiff = countEdges(templateSM) - countEdges(brokenSM);
+    const illegalEdges = countIllegalEdges(brokenSM, templateSM);
+    const tRoles = countRoles(templateSM);
+    const bRoles = countRoles(brokenSM);
+    // Score components (0-1 each)
+    const stateScore = Math.min(1, Math.max(0, stateCountDiff / 3));
+    const edgeScore = Math.min(1, Math.max(0, edgeCountDiff / 3));
+    const illegalScore = Math.min(1, illegalEdges / 2);
+    // Order check: do the same functions appear in a different order?
+    // This catches use-after-free, double-free, and other reordering bugs
+    // where the SM structure is identical but the CALL ORDER is wrong.
+    const orderScore = computeOrderScore(broken, expected);
+    // Weighted combination
+    const score = stateScore * 0.35 + edgeScore * 0.25 + illegalScore * 0.25 + orderScore * 0.15;
+    const detectable = score > 0.15;
+    // Build explanation
+    const reasons = [];
+    if (stateCountDiff > 0)
+        reasons.push(`template has ${stateCountDiff} more state(s) than broken`);
+    if (stateCountDiff < 0)
+        reasons.push(`broken has ${-stateCountDiff} more state(s) than template (illegal transition?)`);
+    if (stateCountDiff === 0)
+        reasons.push(`identical state count — no missing-state signal`);
+    if (edgeCountDiff > 0)
+        reasons.push(`${edgeCountDiff} missing edge(s)`);
+    if (illegalEdges > 0)
+        reasons.push(`${illegalEdges} illegal edge(s) detected`);
+    // Check call order
+    const orderMismatch = computeOrderScore(broken, expected);
+    if (orderMismatch > 0.3 && stateCountDiff === 0) {
+        reasons.push(`function call order differs (score=${orderMismatch.toFixed(2)}) — possible UAF, double-free, or reordering bug`);
+    }
+    let roleDiff = "";
+    if (tRoles.exit > bRoles.exit)
+        roleDiff = `template has ${tRoles.exit - bRoles.exit} more exit state(s)`;
+    else if (tRoles.bridge > bRoles.bridge)
+        roleDiff = `template has ${tRoles.bridge - bRoles.bridge} more bridge state(s)`;
+    else
+        roleDiff = "roles unchanged";
+    let suggestion;
+    if (detectable && stateCountDiff > 0) {
+        suggestion = "✅ HIGH QUALITY — missing state detected. Ready for gold dataset.";
+    }
+    else if (detectable && illegalEdges > 0) {
+        suggestion = "✅ GOOD — illegal transition detected. Verify the sequence is correct.";
+    }
+    else if (stateCountDiff === 0 && edgeCountDiff === 0) {
+        suggestion = "❌ UNDETECTABLE — broken SM is structurally identical to template. Revise broken sequence or mark as non-lifecycle CVE.";
+    }
+    else {
+        suggestion = "⚠️ MARGINAL — weak structural signal. Consider revising the broken/expected sequences.";
+    }
+    return {
+        score: Math.round(score * 100) / 100,
+        detectable,
+        explanation: reasons.join("; ") || "no structural difference detected",
+        diffs: {
+            stateCountDiff,
+            edgeCountDiff,
+            illegalEdges,
+            templateRoles: tRoles,
+            brokenRoles: bRoles,
+            roleDiff,
+        },
+        suggestion,
+    };
+}
+function countEdges(sm) {
+    let count = 0;
+    for (let i = 0; i < sm.stateTransitions.length; i++)
+        for (let j = 0; j < (sm.stateTransitions[i] || []).length; j++)
+            if (sm.stateTransitions[i][j] > 0)
+                count++;
+    return count;
+}
+function countIllegalEdges(testSM, templateSM) {
+    const tEdges = edgeSet(templateSM);
+    const bEdges = edgeSet(testSM);
+    let illegal = 0;
+    for (const e of bEdges)
+        if (!tEdges.has(e))
+            illegal++;
+    return illegal;
+}
+function edgeSet(sm) {
+    const s = new Set();
+    for (let i = 0; i < sm.stateTransitions.length; i++)
+        for (let j = 0; j < (sm.stateTransitions[i] || []).length; j++)
+            if (sm.stateTransitions[i][j] > 0)
+                s.add(`${i}→${j}`);
+    return s;
+}
+/**
+ * Check if the same functions appear in different order between
+ * broken and expected. High score = significant reordering detected.
+ * This catches UAF (free→use vs use→free) and double-free patterns.
+ */
+function computeOrderScore(broken, expected) {
+    const bSet = new Set(broken);
+    const eSet = new Set(expected);
+    // Same functions must appear in both
+    if (bSet.size !== eSet.size)
+        return 0;
+    for (const fn of bSet)
+        if (!eSet.has(fn))
+            return 0;
+    // Count position changes — how many functions changed position?
+    let mismatches = 0;
+    const minLen = Math.min(broken.length, expected.length);
+    for (let i = 0; i < minLen; i++) {
+        if (broken[i] !== expected[i])
+            mismatches++;
+    }
+    // Also check: are any functions that appear multiple times
+    // in broken but different number of times in expected?
+    const bFreq = new Map();
+    const eFreq = new Map();
+    for (const fn of broken)
+        bFreq.set(fn, (bFreq.get(fn) || 0) + 1);
+    for (const fn of expected)
+        eFreq.set(fn, (eFreq.get(fn) || 0) + 1);
+    let freqDiff = 0;
+    for (const [fn, count] of bFreq) {
+        freqDiff += Math.abs(count - (eFreq.get(fn) || 0));
+    }
+    // Reorder + frequency change = signal
+    const reorderScore = Math.min(1, mismatches / Math.max(1, minLen));
+    const freqScore = Math.min(1, freqDiff / 2);
+    return Math.max(0, Math.min(1, reorderScore * 0.6 + freqScore * 0.4));
+}
+function countRoles(sm) {
+    let entry = 0, bridge = 0, exit = 0;
+    for (const s of sm.states) {
+        if (s.role === "entry")
+            entry++;
+        else if (s.role === "bridge")
+            bridge++;
+        else if (s.role === "exit")
+            exit++;
+    }
+    return { entry, bridge, exit };
+}
+/**
+ * Batch-assess a list of candidate gold cases.
+ * Sorts by quality score descending — annotators should
+ * prioritize high-score cases.
+ */
+function rankGoldCandidates(candidates) {
+    return candidates
+        .map(c => ({ id: c.id, ...assessGoldQuality(c.broken, c.expected) }))
+        .sort((a, b) => b.score - a.score);
+}
+function printQualityReport(results) {
+    console.log(`\n─── Gold Case Quality Ranking ───`);
+    console.log(`  ${'ID'.padEnd(10)} ${'Score'.padEnd(8)} ${'Detectable'.padEnd(10)} ${'Signal'}`);
+    console.log(`  ${'─'.repeat(50)}`);
+    let highQ = 0, midQ = 0, lowQ = 0;
+    for (const r of results) {
+        const icon = r.score > 0.5 ? "🟢" : r.score > 0.2 ? "🟡" : "🔴";
+        console.log(`  ${icon} ${r.id.padEnd(8)} ${r.score.toFixed(2).padStart(5)}  ${String(r.detectable).padEnd(10)} ${r.explanation.slice(0, 40)}`);
+        if (r.score > 0.5)
+            highQ++;
+        else if (r.score > 0.2)
+            midQ++;
+        else
+            lowQ++;
+    }
+    console.log(`\n  High quality: ${highQ}  Medium: ${midQ}  Low/undetectable: ${lowQ}`);
+    console.log(`  Low-quality cases should be revised or excluded from gold dataset.\n`);
+}