pmem-ai 0.6.3 → 0.7.0-a

package/CHANGELOG.md

@@ -2,6 +2,50 @@
 
 All notable changes to pmem are documented here.
 
+## 0.7.0 - Universal Agent Memory (presets, custom card types, and domain neutrality)
+
+### Added
+
+- **Universal Domain Presets**: Added `--domain <preset>` flag to `pmem init` supporting `software` (default), `novel` and `research` domains. Configures domain-specific directories (`characters/`, `chapters/`, `world/` for novels; `sources/`, `claims/`, `notes/` for research) and registers them under `schema` keys in the manifest.
+- **Resolved Schema Config**: Added `schema.card_types`, `schema.type_dirs`, `schema.foundational_types`, `schema.evidence_types`, `schema.default_type`, and `schema.creatable_types` fields to manifest. Resolves dynamically with legacy fallbacks for v0.6.x zero-migration compatibility.
+- **Domain-Neutral Recall Output**: `pmem recall --format json` now outputs `active_foundation` based on the configured `foundational_types`. Includes `active_modules` as a backward-compatible alias populated with the same files.
+- **Status Scan Generalization**: `pmem status` now dynamically resolves scan/skip directories from `change_detection.mtime_scan_dirs` and `change_detection.skip_dirs` instead of hardcoded software directory rules. Scans custom preset directories under `.pmem` and excludes database sidecars.
+- **Heuristics Generalization**: Refactored `pmem ask` and `pmem graph` to filter evidence card types dynamically based on `schema.evidence_types` (instead of hardcoded decision/trace checks). `pmem rebuild` scans custom folders dynamically based on `source_of_truth.card_globs`.
+- **Discover Default Disable**: Added `discover.enabled` manifest configuration. Disabled by default in `novel` and `research` projects. Running `pmem discover` on disabled projects outputs a disabled message, exits 0, and avoids scanning files.
+- **Ignore & Skills Generalization**: Added domain-neutral `skills/task.md` instead of `skills/code-task.md` and generalized integration templates to refer to generic "memory cards". Setup generic ignore patterns (like `*.lock`, `*.log`) for non-software domains.
+- **Cleaned Obsolete exit code 1 templates**: Updated `AGENTS.md` and integration templates to remove legacy references to `pmem update --suggest` exiting with 1, replacing them with exit 0 and JSON verification recommendations.
+- **SQLite sidecars Git Ignore**: Ignored SQLite sidecars (`.pmem/pmem.db-*`) inside `.gitignore`.
+
+## 0.6.4 - Polish & Wrap v0.6 Track
+
+### Added
+
+- `pmem rename`: byte-level body whitespace preservation (frontmatter end → body start transitions are no longer normalized).
+- `pmem rename --dry-run`: frontmatter field scan (`aliases` / `tags` / `related` / `depends_on`) reports matches without modifying on `--write`.
+- `pmem integration install claude-code`: generates real `.claude/settings.json` (was `.example.json` placeholder).
+- `pmem integration install cursor`: generates 4 slash command files in `.cursor/commands/` (Cursor 0.46+ convention).
+- `pmem integration install codex`: AGENTS.md template now includes a `## Commands` section with concrete `pmem` invocations.
+- `pmem integration verify`: reads `pmem_integration_version` from actual installed files (not just manifest), reports per-file `match / unknown / mismatch` state.
+- `pmem doctor` lock check: shows owner PID, age in seconds, stale threshold, and explicit next-step fix hints for active and stale lock states.
+- `pmem init --guided`: when any of `--description` / `--stage` / `--next` is missing, prints a `Missing: ...` block with the equivalent re-run command before continuing.
+
+### Fixed
+
+- `pmem rebuild --full` was clearing the `sessions` table without restoring in-progress sessions, causing `pmem session end` to report "No active pmem session found" after a recovery-time rebuild. Snapshot + clear + restore now runs **inside the same SQLite transaction** as the card rebuild, eliminating the non-atomic window. Root cause: `clearAllTables()` includes `DELETE FROM sessions` but sessions are runtime state, not derived from markdown cards.
+
+### Changed
+
+- `CURRENT_TEMPLATE_VERSION` bumped from `0.6.0` to `0.6.4` (was a missed constant update from earlier polish work; now correctly matches the publishing version).
+
+### Design evaluations (no implementation)
+
+- `pmem session start --create-if-missing`: **deferred to v0.7.0+**. Risk of masking wrong-directory use outweighs the 5-second friction saved. No comparable agent tool (Claude Code / Cursor / Codex) auto-creates project memory on first session. See `docs/session-start-create-design-eval.md`.
+
+### Known non-blocking (carry-over)
+
+- `pmem_integration_version` YAML serialization relies on `parseSimpleYaml` handling of double-quoted strings; single-quoted strings would be misread. Single-quote use is not exposed in any current template. Tracked for v0.7.0 parser hardening.
+- `update_log` / `dirty_flags` may still reference session_id values that were rolled back by an interrupted pre-v0.6.4 rebuild. Historical data only; no functional impact. Tracked for v0.7.0 integrity tightening.
+
 ## 0.6.3 - Relationship Auto-Discovery
 
 ### Added

package/README.md

@@ -62,6 +62,18 @@ pmem install --skills --gemini    # → ~/.gemini/skills/pmem/
 pmem install --skills --all       # → all detected agents
 ```
 
+Run the command for each agent you use. Each install copies the packaged
+`skills/pmem/` directory, including `SKILL.md` and the reference guides, into
+that agent's global skills folder.
+
+Verify the installed skill files:
+
+```bash
+test -f ~/.claude/skills/pmem/SKILL.md
+test -f ~/.codex/skills/pmem/SKILL.md
+test -f ~/.gemini/skills/pmem/SKILL.md
+```
+
 ## 5-Minute Quick Start
 
 Create project memory in a repository:
@@ -230,6 +242,49 @@ pmem verify
 
 `distill` consolidates trace cards into stable cards when enough evidence accumulates.
 
+### Domain Presets & Custom Schema
+
+Starting with v0.7.0, `pmem` is domain-neutral. You can initialize a project with a domain preset, customize valid card types, directories, and behavior.
+
+#### Domain Presets
+
+Initialize a project with a domain preset using `--domain <preset>`:
+```bash
+pmem init my-project --domain novel
+```
+
+Built-in presets:
+- **`software`** (default): For software engineering projects. Creates directories for `modules/`, `features/`, `decisions/`, etc. `discover` is enabled. Foundational types: `['module']`.
+- **`novel`**: For creative writing. Creates directories for `characters/`, `chapters/`, `world/`, `arc/`, `decisions/`, `traces/`. `discover` is disabled by default. Foundational types: `['character', 'chapter']`.
+- **`research`**: For literature reviews, research papers, and studies. Creates directories for `sources/`, `claims/`, `notes/`, `experiments/`, `decisions/`, `traces/`. `discover` is disabled by default. Foundational types: `['source', 'claim']`.
+
+#### Custom Schema Manifest Settings
+
+The manifest `schema` section controls validation and runtime behavior:
+- `schema.card_types`: Whitelist of valid card types.
+- `schema.type_dirs`: Key-value map of card types to directory paths (e.g., `character: characters`).
+- `schema.creatable_types`: Types that `pmem new` can instantiate.
+- `schema.foundational_types`: Core types returned as foundational cards during recall.
+- `schema.evidence_types`: Card types representing evidence (e.g., `decision`, `trace`) used for `pmem ask` and graph tracing.
+- `schema.default_type`: Fallback type when none is specified.
+
+#### Recall Output (`active_foundation`)
+
+When calling `pmem recall --format json` on non-software domains, the JSON output populates `active_foundation` with cards matching the `foundational_types` configuration. For legacy compatibility, the `active_modules` field is also populated with the same list.
+
+#### Discovery Configuration (`discover.enabled`)
+
+To toggle autodiscovery globally, configure `discover.enabled` in `manifest.yml`:
+```yaml
+discover:
+  enabled: false
+```
+When disabled, running `pmem discover` will print a disabled message and exit `0` immediately without scanning files.
+
+#### Backward Compatibility
+
+`pmem` v0.7.0 maintains strict zero-migration backward compatibility with v0.6.x legacy projects. If a project does not contain a `schema` block in its manifest, `pmem` will automatically fall back to the legacy `software` defaults without modifying or rewriting the manifest file.
+
 ## Agent Workflow
 
 At the start of an agent session:
@@ -270,7 +325,7 @@ Installed integration templates are available under:
 ## CLI Reference
 
 ```bash
-pmem init [project-name] [--guided]
+pmem init [project-name] [--guided] [--domain software|novel|research]
 
 pmem recall [--budget N] [--format compact|json|paths|pack]
 pmem ask <query> [--format compact|json|paths|pack]

package/dist/commands/ask.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ask.d.ts","sourceRoot":"","sources":["../../src/commands/ask.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,SAAS,EAAoB,MAAM,UAAU,CAAC;AAyB5D,wBAAgB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,GAAE,SAAqB,GAAG,IAAI,CA0S7E"}

package/dist/commands/ask.js

@@ -38,6 +38,7 @@ const path = __importStar(require("path"));
 const fs_1 = require("../core/fs");
 const db_1 = require("../core/db");
 const format_1 = require("../core/format");
+const manifest_1 = require("../core/manifest");
 const PMEM_DIR = '.pmem';
 function askCommand(query, format = 'compact') {
     const cwd = process.cwd();
@@ -241,10 +242,13 @@ function askCommand(query, format = 'compact') {
     for (const m of deduped.slice(0, 8)) {
         recommendedFiles.push(m.file);
     }
+    const manifest = (0, manifest_1.loadManifest)(pmemPath);
+    const config = manifest ? (0, manifest_1.resolveConfig)(manifest) : { evidence_types: ['decision', 'trace'] };
+    const evidenceTypes = config.evidence_types;
     const evidencePaths = [];
     for (const m of deduped) {
         const card = db.prepare("SELECT type, file_path FROM cards WHERE id = ? AND is_deleted = 0").get(m.id);
-        if (card && (card.type === 'decision' || card.type === 'trace')) {
+        if (card && evidenceTypes.includes(card.type)) {
             evidencePaths.push(card.file_path);
         }
     }

package/dist/commands/ask.js.map

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package/dist/commands/distill.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"distill.d.ts","sourceRoot":"","sources":["../../src/commands/distill.ts"],"names":[],"mappings":"AAuBA,wBAAgB,cAAc,CAAC,OAAO,EAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,aAAa,CAAC,EAAE,OAAO,CAAC;IAAC,eAAe,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CAwEtH"}
+{"version":3,"file":"distill.d.ts","sourceRoot":"","sources":["../../src/commands/distill.ts"],"names":[],"mappings":"AA2BA,wBAAgB,cAAc,CAAC,OAAO,EAAE;IAAE,OAAO,CAAC,EAAE,OAAO,CAAC;IAAC,aAAa,CAAC,EAAE,OAAO,CAAC;IAAC,eAAe,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,IAAI,CA8EtH"}

package/dist/commands/distill.js

@@ -39,6 +39,9 @@ const manifest_1 = require("../core/manifest");
 const fs_1 = require("../core/fs");
 const db_1 = require("../core/db");
 const PMEM_DIR = '.pmem';
+// v0.7.0: resolved from manifest at command start; defaults set by resolveConfig().
+let _mergeTargetTypes = ['module', 'decision', 'task', 'feature'];
+let _mergeTargetDirs = ['modules', 'features', 'decisions', 'tasks'];
 function distillCommand(options) {
     const cwd = process.cwd();
     const pmemPath = path.join(cwd, PMEM_DIR);
@@ -47,6 +50,11 @@ function distillCommand(options) {
         console.log('No .pmem/manifest.yml found. Run `pmem init` first.');
         return;
     }
+    // v0.7.0: resolve domain-specific config (merge_target_types etc.)
+    const config = (0, manifest_1.resolveConfig)(manifest);
+    _mergeTargetTypes = config.merge_target_types;
+    // Only directories that correspond to merge target types (not all type_dirs).
+    _mergeTargetDirs = [...new Set(config.merge_target_types.map(t => config.type_dirs[t]).filter(Boolean))];
     // Eagerly open DB if it exists, so downstream helpers can use getDatabase()
     const dbPath = path.join(pmemPath, 'pmem.db');
     if ((0, fs_1.fileExists)(dbPath)) {
@@ -189,19 +197,20 @@ function groupTracesByRelated(traces) {
 }
 function groupTracesByRelatedDb(traces, db) {
     const map = new Map();
-    // For each trace, look up edges to find related module/decision/task/feature cards
+    // v0.7.0: merge target types from manifest (v0.6.4 fallback: module/decision/task/feature)
+    const typePlaceholders = _mergeTargetTypes.map(() => '?').join(', ');
     const relatedStmt = db.prepare(`
     SELECT e.to_id AS related_id FROM edges e
       JOIN cards c ON e.to_id = c.id
-      WHERE e.from_id = ? AND c.type IN ('module', 'decision', 'task', 'feature') AND c.is_deleted = 0
+      WHERE e.from_id = ? AND c.type IN (${typePlaceholders}) AND c.is_deleted = 0
     UNION
     SELECT e.from_id AS related_id FROM edges e
       JOIN cards c ON e.from_id = c.id
-      WHERE e.to_id = ? AND c.type IN ('module', 'decision', 'task', 'feature') AND c.is_deleted = 0
+      WHERE e.to_id = ? AND c.type IN (${typePlaceholders}) AND c.is_deleted = 0
   `);
     for (const trace of traces) {
         const traceId = trace.frontmatter.id;
-        const edgeRows = relatedStmt.all(traceId, traceId);
+        const edgeRows = relatedStmt.all(traceId, ..._mergeTargetTypes, traceId, ..._mergeTargetTypes);
         const key = edgeRows.length > 0 ? edgeRows[0].related_id : 'project';
         if (!map.has(key))
             map.set(key, []);
@@ -254,8 +263,8 @@ function findCardFile(pmemPath, nodeId) {
             // DB query failed — fall back
         }
     }
-    // Fall back to file scanning through modules/, features/, decisions/, tasks/
-    for (const dir of ['modules', 'features', 'decisions', 'tasks']) {
+    // v0.7.0: fall back to file scanning through type_dirs from resolved config
+    for (const dir of _mergeTargetDirs) {
         const dirPath = path.join(pmemPath, dir);
         if (!(0, fs_1.fileExists)(dirPath))
             continue;

package/dist/commands/distill.js.map

@@ -1 +1 @@
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package/dist/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAW1C,wBAAgB,aAAa,CAAC,MAAM,GAAE,SAAqB,GAAG,IAAI,CA2GjE"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAW1C,wBAAgB,aAAa,CAAC,MAAM,GAAE,SAAqB,GAAG,IAAI,CAwHjE"}

package/dist/commands/doctor.js

@@ -121,19 +121,32 @@ function doctorCommand(format = 'compact') {
     catch {
         checks.push({ name: 'git', status: 'warn', message: 'Not a Git repository.', fix: 'pmem status and mark-dirty --auto will use mtime fallback.' });
     }
-    // 7b. Lock status
+    // 7b. Lock status (v0.6.4 polish 6: richer output with age, owner, suggestions)
     const lockPath = path.join(pmemPath, '.lock');
-    const lockStatus = (0, fs_1.getLockStatus)(lockPath);
-    if (!lockStatus.exists) {
+    const lockInfo = (0, fs_1.getLockInfo)(lockPath);
+    if (!lockInfo.exists) {
         checks.push({ name: 'lock', status: 'ok', message: 'No lock held.' });
     }
-    else if (lockStatus.stale) {
-        const ageSec = lockStatus.age !== null ? Math.round(lockStatus.age / 1000) : '?';
-        checks.push({ name: 'lock', status: 'warn', message: `Stale lock detected at .pmem/.lock (age: ${ageSec}s).`, fix: 'Run: pmem verify --fix-locks' });
+    else if (lockInfo.is_stale) {
+        const ageSec = lockInfo.age_seconds !== null ? lockInfo.age_seconds : '?';
+        const ownerLabel = lockInfo.owner_pid !== null ? `pmem (PID: ${lockInfo.owner_pid})` : 'pmem (PID: unknown)';
+        checks.push({
+            name: 'lock',
+            status: 'warn',
+            message: `Stale lock held at .pmem/.lock\n        Owner: ${ownerLabel}\n        Age: ${ageSec}s (stale threshold: ${lockInfo.stale_threshold_seconds}s)`,
+            fix: 'Run: pmem verify --fix-locks  (to clean stale lock)\n       Or: pmem doctor (to diagnose lock status)',
+        });
     }
     else {
-        const ageSec = lockStatus.age !== null ? Math.round(lockStatus.age / 1000) : '?';
-        checks.push({ name: 'lock', status: 'warn', message: `Active lock held at .pmem/.lock (age: ${ageSec}s). Another pmem process may be running.`, fix: 'Wait for it to finish. If no other process is running, run: pmem verify --fix-locks' });
+        const ageSec = lockInfo.age_seconds !== null ? lockInfo.age_seconds : '?';
+        const ownerLabel = lockInfo.owner_pid !== null ? `pmem (PID: ${lockInfo.owner_pid})` : 'pmem (PID: unknown)';
+        const pidHint = lockInfo.owner_pid !== null ? `\n        → Or check process: ps -p ${lockInfo.owner_pid}` : '';
+        checks.push({
+            name: 'lock',
+            status: 'warn',
+            message: `Active lock held at .pmem/.lock\n        Owner: ${ownerLabel}\n        Age: ${ageSec}s (stale threshold: ${lockInfo.stale_threshold_seconds}s)`,
+            fix: `If another pmem is not actually running, wait ${lockInfo.stale_threshold_seconds}s and run: pmem verify --fix-locks${pidHint}`,
+        });
     }
     // 8. Integrations
     if (manifest && manifest.integrations?.active?.length > 0) {

package/dist/commands/doctor.js.map

@@ -1 +1 @@
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+{"version":3,"file":"doctor.js","sourceRoot":"","sources":["../../src/commands/doctor.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAgBA,sCAwHC;AAxID,2CAA6B;AAC7B,iDAAyC;AACzC,mCAAqD;AACrD,+CAAgD;AAChD,mCAAuE;AAGvE,MAAM,QAAQ,GAAG,OAAO,CAAC;AASzB,SAAgB,aAAa,CAAC,SAAoB,SAAS;IACzD,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAC1B,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;IAC1C,MAAM,MAAM,GAAkB,EAAE,CAAC;IAEjC,mBAAmB;IACnB,IAAI,CAAC,IAAA,eAAU,EAAC,QAAQ,CAAC,EAAE,CAAC;QAC1B,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,6BAA6B,EAAE,GAAG,EAAE,+BAA+B,EAAE,CAAC,CAAC;QACjI,YAAY,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAC7B,OAAO;IACT,CAAC;IACD,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,0BAA0B,EAAE,CAAC,CAAC;IAErF,cAAc;IACd,MAAM,QAAQ,GAAG,IAAA,uBAAY,EAAC,QAAQ,CAAC,CAAC;IACxC,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,oCAAoC,EAAE,GAAG,EAAE,gBAAgB,EAAE,CAAC,CAAC;IAC3H,CAAC;SAAM,CAAC;QACN,MAAM,SAAS,GAAG,QAAQ,CAAC,IAAI,EAAE,cAAc,CAAC;QAChD,MAAM,CAAC,IAAI,CAAC;YACV,IAAI,EAAE,UAAU;YAChB,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM;YACjC,OAAO,EAAE,SAAS,CAAC,CAAC,CAAC,8BAA8B,SAAS,IAAI,CAAC,CAAC,CAAC,gDAAgD;YACnH,GAAG,EAAE,SAAS,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,4BAA4B;SAC1D,CAAC,CAAC;IACL,CAAC;IAED,cAAc;IACd,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;IAC9C,IAAI,CAAC,IAAA,eAAU,EAAC,MAAM,CAAC,EAAE,CAAC;QACxB,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,oBAAoB,EAAE,GAAG,EAAE,mBAAmB,EAAE,CAAC,CAAC;IAC7G,CAAC;SAAM,CAAC;QACN,IAAI,CAAC;YACH,MAAM,EAAE,GAAG,IAAA,iBAAY,EAAC,QAAQ,CAAC,CAAC;YAClC,IAAA,iBAAY,EAAC,EAAE,CAAC,CAAC;YAEjB,aAAa;YACb,MAAM,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,0DAA0D,CAAC,CAAC,GAAG,EAAuB,CAAC;YAClH,MAAM,SAAS,GAAG,OAAO,EAAE,KAAK,IAAI,CAAC,CAAC;YACtC,MAAM,WAAW,GAAG,EAAE,CAAC,OAAO,CAAC,+EAA+E,CAAC,CAAC,GAAG,EAAuB,CAAC;YAE3I,MAAM,CAAC,IAAI,CAAC;gBACV,IAAI,EAAE,UAAU;gBAChB,MAAM,EAAE,IAAI;gBACZ,OAAO,EAAE,oBAAoB,SAAS,WAAW,WAAW,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,WAAW,CAAC,KAAK,gBAAgB,CAAC,CAAC,CAAC,EAAE,GAAG;aACzH,CAAC,CAAC;YAEH,WAAW;YACX,IAAI,SAAS,KAAK,CAAC,EAAE,CAAC;gBACpB,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,wBAAwB,EAAE,GAAG,EAAE,gEAAgE,EAAE,CAAC,CAAC;YAC3J,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,SAAS,kBAAkB,EAAE,CAAC,CAAC;YACxF,CAAC;YAED,iBAAiB;YACjB,MAAM,QAAQ,GAAG,EAAE,CAAC,OAAO,CAAC,qEAAqE,CAAC,CAAC,GAAG,EAAuB,CAAC;YAC9H,MAAM,UAAU,GAAG,QAAQ,EAAE,KAAK,IAAI,CAAC,CAAC;YACxC,IAAI,UAAU,GAAG,CAAC,EAAE,CAAC;gBACnB,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,UAAU,4BAA4B,EAAE,GAAG,EAAE,4BAA4B,EAAE,CAAC,CAAC;YAC9I,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,4BAA4B,EAAE,CAAC,CAAC;YAC5F,CAAC;YAED,oBAAoB;YACpB,MAAM,UAAU,GAAG,EAAE,CAAC,OAAO,CAAC,6FAA6F,CAAC,CAAC,GAAG,EAA2D,CAAC;YAC5L,IAAI,UAAU,EAAE,CAAC;gBACf,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,mBAAmB,UAAU,CAAC,EAAE,GAAG,UAAU,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,UAAU,CAAC,UAAU,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,EAAE,CAAC,CAAC;YAC5J,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,oBAAoB,EAAE,GAAG,EAAE,2CAA2C,EAAE,CAAC,CAAC;YACpI,CAAC;YAED,IAAA,kBAAa,GAAE,CAAC;QAClB,CAAC;QAAC,MAAM,CAAC;YACP,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,+CAA+C,EAAE,GAAG,EAAE,iDAAiD,EAAE,CAAC,CAAC;QACvK,CAAC;IACH,CAAC;IAED,sBAAsB;IACtB,IAAI,CAAC;QACH,IAAA,wBAAQ,EAAC,yBAAyB,EAAE,EAAE,GAAG,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;QAC9D,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,0BAA0B,EAAE,CAAC,CAAC;IAClF,CAAC;IAAC,MAAM,CAAC;QACP,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,uBAAuB,EAAE,GAAG,EAAE,4DAA4D,EAAE,CAAC,CAAC;IACpJ,CAAC;IAED,gFAAgF;IAChF,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;IAC9C,MAAM,QAAQ,GAAG,IAAA,gBAAW,EAAC,QAAQ,CAAC,CAAC;IACvC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC;QACrB,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,OAAO,EAAE,eAAe,EAAE,CAAC,CAAC;IACxE,CAAC;SAAM,IAAI,QAAQ,CAAC,QAAQ,EAAE,CAAC;QAC7B,MAAM,MAAM,GAAG,QAAQ,CAAC,WAAW,KAAK,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAC,GAAG,CAAC;QAC1E,MAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,KAAK,IAAI,CAAC,CAAC,CAAC,cAAc,QAAQ,CAAC,SAAS,GAAG,CAAC,CAAC,CAAC,qBAAqB,CAAC;QAC7G,MAAM,CAAC,IAAI,CAAC;YACV,IAAI,EAAE,MAAM;YACZ,MAAM,EAAE,MAAM;YACd,OAAO,EAAE,kDAAkD,UAAU,kBAAkB,MAAM,uBAAuB,QAAQ,CAAC,uBAAuB,IAAI;YACxJ,GAAG,EAAE,uGAAuG;SAC7G,CAAC,CAAC;IACL,CAAC;SAAM,CAAC;QACN,MAAM,MAAM,GAAG,QAAQ,CAAC,WAAW,KAAK,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAC,GAAG,CAAC;QAC1E,MAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,KAAK,IAAI,CAAC,CAAC,CAAC,cAAc,QAAQ,CAAC,SAAS,GAAG,CAAC,CAAC,CAAC,qBAAqB,CAAC;QAC7G,MAAM,OAAO,GAAG,QAAQ,CAAC,SAAS,KAAK,IAAI,CAAC,CAAC,CAAC,uCAAuC,QAAQ,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QAC/G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package/dist/commands/graph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"graph.d.ts","sourceRoot":"","sources":["../../src/commands/graph.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAoB,SAAS,EAAE,MAAM,UAAU,CAAC;AAI5D,wBAAgB,cAAc,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE;IACnD,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,SAAS,CAAC;IACnB,MAAM,CAAC,EAAE,UAAU,GAAG,UAAU,GAAG,SAAS,GAAG,KAAK,CAAC;CACtD,GAAG,IAAI,CAyKP;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,MAAM,GAAG,IAAI,CAiF7C"}
+{"version":3,"file":"graph.d.ts","sourceRoot":"","sources":["../../src/commands/graph.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAoB,SAAS,EAAE,MAAM,UAAU,CAAC;AAK5D,wBAAgB,cAAc,CAAC,EAAE,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE;IACnD,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,MAAM,CAAC,EAAE,SAAS,CAAC;IACnB,MAAM,CAAC,EAAE,UAAU,GAAG,UAAU,GAAG,SAAS,GAAG,KAAK,CAAC;CACtD,GAAG,IAAI,CAyKP;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,MAAM,GAAG,IAAI,CAsF7C"}

package/dist/commands/graph.js

@@ -38,6 +38,7 @@ exports.traceCommand = traceCommand;
 const path = __importStar(require("path"));
 const fs_1 = require("../core/fs");
 const db_1 = require("../core/db");
+const manifest_1 = require("../core/manifest");
 const PMEM_DIR = '.pmem';
 function relatedCommand(id, options) {
     const cwd = process.cwd();
@@ -198,15 +199,19 @@ function traceCommand(id) {
     console.log(`Type: ${card.type}`);
     console.log(`Title: ${card.title}`);
     console.log(`File: ${card.file_path}`);
+    const manifest = (0, manifest_1.loadManifest)(pmemPath);
+    const config = manifest ? (0, manifest_1.resolveConfig)(manifest) : { evidence_types: ['decision', 'trace'] };
+    const evidenceTypes = config.evidence_types;
+    const placeholders = evidenceTypes.map(() => '?').join(',');
     // Find evidence: decision and trace type cards connected via edges
     const evidenceRows = db.prepare(`
     SELECT DISTINCT c.id, c.type, c.title, c.file_path
     FROM edges e
     JOIN cards c ON (c.id = e.from_id OR c.id = e.to_id) AND c.id != ?
     WHERE (e.from_id = ? OR e.to_id = ?)
-      AND (c.type = 'decision' OR c.type = 'trace')
+      AND c.type IN (${placeholders})
       AND c.is_deleted = 0
-  `).all(id, id, id);
+  `).all(id, id, id, ...evidenceTypes);
     if (evidenceRows.length > 0) {
         console.log('');
         console.log('Evidence Sources:');

package/dist/commands/graph.js.map

@@ -1 +1 @@
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package/dist/commands/init.d.ts

@@ -1,3 +1,16 @@
+export interface DomainPreset {
+    domain: string;
+    card_types: string[];
+    type_dirs: Record<string, string>;
+    foundational_types: string[];
+    evidence_types: string[];
+    default_type: string;
+    creatable_types: string[];
+    max_tokens?: Record<string, number>;
+    max_sections?: Record<string, number>;
+    warn_when_related_count_gt_by_type?: Record<string, number>;
+}
+export declare const DOMAIN_PRESETS: Record<string, DomainPreset>;
 export declare function initCommand(options: {
     guided?: boolean;
     projectName?: string;
@@ -5,5 +18,6 @@ export declare function initCommand(options: {
     stage?: string;
     next?: string;
     answers?: string;
+    domain?: string;
 }): Promise<void>;
 //# sourceMappingURL=init.d.ts.map

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAOA,MAAM,WAAW,YAAY;IAC3B,MAAM,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,EAAE,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAClC,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,EAAE,MAAM,EAAE,CAAC;IACzB,YAAY,EAAE,MAAM,CAAC;IACrB,eAAe,EAAE,MAAM,EAAE,CAAC;IAC1B,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpC,YAAY,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACtC,kCAAkC,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;CAC7D;AAED,eAAO,MAAM,cAAc,EAAE,MAAM,CAAC,MAAM,EAAE,YAAY,CA8DvD,CAAC;AAuZF,wBAAsB,WAAW,CAAC,OAAO,EAAE;IACzC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB,GAAG,OAAO,CAAC,IAAI,CAAC,CA+ShB"}