plumb-fhir 0.6.0 → 0.6.2

package/CHANGELOG.md

@@ -1,5 +1,35 @@
 # Changelog
 
+## 0.6.2 (2026-10-05)
+
+`validate` and `push` from an installed Plumb, and on Medplum's `awslambda`
+bot runtime, where the checker now has its first verified run.
+
+- **The installed CLI finds its own package.** It stopped at
+  `dist/esm/package.json`, so `validate` and `push` failed reading
+  `dist/esm/dist/checker.cjs`, and `--version` printed `undefined` (#117,
+  #118). `./package.json` is exported.
+- **On the `awslambda` runtime, a page waits while the checker's function is
+  not ready** (`Pending` after an install, an update in progress after a
+  redeploy), for up to a minute, instead of failing the first gate (#119).
+
+## 0.6.1 (2026-10-05)
+
+Fixes from the first adoption of 0.6.0 in a Medplum monorepo. Regenerate to
+pick them up: `plumb generate --check` reports the generated files as stale.
+
+- **Doc comments** are no longer cut at an abbreviation or inside
+  parentheses: US Core's `telecom` read `A contact detail (e.g.` (#111).
+- **The generated reads compile without the DOM lib or `@types/node`.**
+  `searchProfiled` takes a string, a record, or any list of pairs (a
+  `URLSearchParams` is one) and passes `searchResources` plain pairs, so
+  `ProfiledReader.searchResources` now takes `string[][]`; a `MedplumClient`
+  still fits (#112).
+- **Generated files export only what the index or a sibling uses**, so
+  unused-export tools such as knip report nothing in them: `routes`,
+  `required` and `WithId` are no longer exported (#113).
+- `npm pkg fix` on `bin`, and the README's cache action at v6 (#115).
+
 ## 0.6.0 (2026-10-05)
 
 The first published release; it includes everything in 0.1.0 to 0.5.0, which were not published.

package/README.md

@@ -155,7 +155,7 @@ and its dependencies), so cache the shared package cache, keyed on
 checks each cached package against the lock's hashes. In GitHub Actions:
 
 ```yaml
-- uses: actions/cache@v4
+- uses: actions/cache@v6
   with:
     path: ~/.fhir/packages
     key: fhir-packages-${{ hashFiles('plumb.lock') }}

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package/dist/cjs/conformance.d.ts

@@ -1,5 +1,6 @@
 import { type MedplumClient } from '@medplum/core';
-import type { Reason } from './checker/handler.js';
+import type { PageResult, Reason } from './checker/handler.js';
+import { checkerInput } from './checker/input.js';
 import { type EnvOptions, type EnvResult } from './connect.js';
 import type { LoadProfilesResult } from './loader.js';
 type ValidateStepName = 'load' | 'connect' | 'checker' | 'profiles' | 'validate';
@@ -85,5 +86,7 @@ export declare function judge(result: Pick<Checked, 'types' | 'profiles'>, selec
     summary: string;
     failed: boolean;
 };
+/** One page, as an async job: a page can outlast an HTTP request, not the bot's timeout. */
+export declare function runPage(medplum: MedplumClient, botId: string, input: ReturnType<typeof checkerInput>, wait?: (ms: number) => Promise<void>): Promise<PageResult>;
 export {};
 //# sourceMappingURL=conformance.d.ts.map

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package/dist/cjs/emit/transform.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"transform.d.ts","sourceRoot":"","sources":["../../../src/emit/transform.ts"],"names":[],"mappings":"AAKA,OAAO,EAIL,KAAK,eAAe,EACpB,KAAK,YAAY,EAGlB,MAAM,eAAe,CAAC;AACvB,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,oBAAoB,CAAC;AAC9D,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,cAAc,CAAC;AACvD,OAAO,EAAE,KAAK,IAAI,EAAkB,MAAM,gBAAgB,CAAC;AAE3D,MAAM,MAAM,QAAQ,GAChB;IAAE,IAAI,EAAE,KAAK,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,QAAQ,EAAE,CAAA;CAAE,GAChD;IAAE,IAAI,EAAE,WAAW,CAAC;IAAC,IAAI,EAAE,QAAQ,GAAG,QAAQ,GAAG,SAAS,CAAA;CAAE;AAC9D,gFAAgF;GAC9E;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,GAC5C;IAAE,IAAI,EAAE,SAAS,CAAC;IAAC,KAAK,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAA;CAAE,GACrD;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,EAAE,EAAE,QAAQ,CAAA;CAAE,GAC/B;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,EAAE,EAAE,QAAQ,EAAE,CAAA;CAAE;AACnC,yDAAyD;GACvD;IAAE,IAAI,EAAE,UAAU,CAAC;IAAC,EAAE,EAAE,QAAQ,CAAA;CAAE,GAClC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,EAAE,EAAE,QAAQ,CAAA;CAAE,GAC9B;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,EAAE,EAAE,QAAQ,EAAE,CAAA;CAAE;AACnC,0CAA0C;GACxC;IAAE,IAAI,EAAE,QAAQ,CAAC;IAAC,MAAM,EAAE,KAAK,EAAE,CAAA;CAAE;AACrC,wEAAwE;GACtE;IAAE,IAAI,EAAE,QAAQ,CAAC;IAAC,IAAI,EAAE,QAAQ,CAAC;IAAC,IAAI,EAAE,MAAM,EAAE,CAAC;IAAC,MAAM,EAAE,KAAK,EAAE,CAAC;IAAC,KAAK,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAA;CAAE,GACxF;IAAE,IAAI,EAAE,SAAS,CAAC;IAAC,IAAI,EAAE,QAAQ,CAAC;IAAC,IAAI,EAAE,MAAM,EAAE,CAAA;CAAE,GACnD;IAAE,IAAI,EAAE,OAAO,CAAA;CAAE;AACnB,mFAAmF;GACjF;IAAE,IAAI,EAAE,aAAa,CAAA;CAAE,CAAC;AAE5B,MAAM,WAAW,KAAK;IACpB,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,OAAO,CAAC;IAClB,IAAI,EAAE,QAAQ,CAAC;IACf,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,UAAU,QAAQ;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,QAAQ,CAAC;CAChB;AAED,iFAAiF;AACjF,MAAM,WAAW,MAAM;IACrB,IAAI,EAAE,OAAO,GAAG,KAAK,CAAC;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,wBAAwB;IACxB,KAAK,EAAE,MAAM,CAAC;IACd,4DAA4D;IAC5D,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,6DAA6D;IAC7D,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACjC;AAED,MAAM,WAAW,YAAY;IAC3B,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,yDAAyD;IACzD,MAAM,EAAE,MAAM,CAAC;IACf,EAAE,EAAE,mBAAmB,CAAC;IACxB,QAAQ,EAAE,MAAM,CAAC;IACjB,uFAAuF;IACvF,GAAG,EAAE,MAAM,EAAE,CAAC;IACd,sFAAsF;IACtF,KAAK,EAAE,QAAQ,EAAE,CAAC;IAClB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,2FAA2F;IAC3F,SAAS,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,IAAI,EAAE,CAAA;KAAE,EAAE,CAAC;IAC7C,4CAA4C;IAC5C,MAAM,EAAE,MAAM,CAAC;IACf;;;OAGG;IACH,QAAQ,EAAE,MAAM,EAAE,EAAE,CAAC;CACtB;AAED,UAAU,cAAc;IACtB,IAAI,EAAE,iBAAiB,CAAC;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,GAAG,EAAE,MAAM,CAAC;CACb;AAkjBD;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,YAAY,EAAE,KAAK,EAAE,eAAe,uCAoBhF;AAiKD,oEAAoE;AACpE,wBAAgB,SAAS,CACvB,MAAM,EAAE,kBAAkB,EAC1B,OAAO,GAAE;IAAE,QAAQ,CAAC,EAAE,MAAM,CAAA;CAAO,GAClC;IACD,MAAM,EAAE,YAAY,EAAE,CAAC;IACvB,MAAM,EAAE,cAAc,EAAE,CAAC;IACzB,0EAA0E;IAC1E,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB,CAwFA"}

package/dist/esm/cli.mjs

@@ -1251,8 +1251,8 @@ function registerCore() {
   coreIndexed = true;
 }
 function dependenciesOf(dir) {
-  const manifest = JSON.parse(readFileSync(join2(dir, "package", "package.json"), "utf8"));
-  return Object.entries(manifest.dependencies ?? {}).map(([name2, version2]) => `${name2}@${version2}`);
+  const manifest2 = JSON.parse(readFileSync(join2(dir, "package", "package.json"), "utf8"));
+  return Object.entries(manifest2.dependencies ?? {}).map(([name2, version2]) => `${name2}@${version2}`);
 }
 var Closure = class {
   definitions = /* @__PURE__ */ new Map();
@@ -1498,8 +1498,8 @@ async function resolve3(igs, lock, check2, cacheDir, fetch) {
       const locked = lock?.packages[id]?.integrity;
       if (check2 && !locked) throw new Failure("lock-disagrees", `plumb.lock does not list ${id}.`);
       const { pkg, integrity } = await ensureCached(id, cacheDir, locked, fetch);
-      const manifest = readManifest(id, pkg.dir);
-      if (roots.has(id)) queue.push(...dependenciesOf2(id, manifest));
+      const manifest2 = readManifest(id, pkg.dir);
+      if (roots.has(id)) queue.push(...dependenciesOf2(id, manifest2));
       packages.push(pkg);
       integrities[id] = { integrity };
     } catch (err) {
@@ -1542,16 +1542,16 @@ async function ensureCached(id, cacheDir, locked, fetch) {
   return { pkg: { name: name2, version: version2, dir, fetched, integrity }, integrity };
 }
 function readManifest(id, dir) {
-  const manifest = JSON.parse(
+  const manifest2 = JSON.parse(
     readFileSync2(join3(dir, "package", "package.json"), "utf8")
   );
-  if (manifest.fhirVersions && !manifest.fhirVersions.some((v) => v.startsWith("4.0"))) {
-    throw new Failure("not-r4", `${id} is for FHIR ${manifest.fhirVersions.join(", ")}, not R4.`);
+  if (manifest2.fhirVersions && !manifest2.fhirVersions.some((v) => v.startsWith("4.0"))) {
+    throw new Failure("not-r4", `${id} is for FHIR ${manifest2.fhirVersions.join(", ")}, not R4.`);
   }
-  return manifest;
+  return manifest2;
 }
-function dependenciesOf2(id, manifest) {
-  return Object.entries(manifest.dependencies ?? {}).filter(([name2]) => name2 !== BASE_R4).map(([name2, version2]) => {
+function dependenciesOf2(id, manifest2) {
+  return Object.entries(manifest2.dependencies ?? {}).filter(([name2]) => name2 !== BASE_R4).map(([name2, version2]) => {
     if (!EXACT_VERSION.test(version2)) {
       throw new Failure(
         "inexact-dependency",
@@ -1570,8 +1570,8 @@ async function download(name2, version2, fetch) {
     if (!response.ok) throw new Failure("registry-error", `${url} returned ${response.status}.`);
     return response;
   };
-  const manifest = await (await get(`${REGISTRY}/${name2}`)).json();
-  const dist = manifest.versions?.[version2]?.dist;
+  const manifest2 = await (await get(`${REGISTRY}/${name2}`)).json();
+  const dist = manifest2.versions?.[version2]?.dist;
   if (!dist?.tarball || !dist.shasum) {
     throw new Failure("registry-error", `The registry has no ${id}.`);
   }
@@ -1862,20 +1862,31 @@ async function checkType(medplum, saved, options, botId, input, onCore) {
     await options.onPage?.(resourceType, saved.pages);
   } while (!type.done);
 }
-async function runPage(medplum, botId, input) {
-  const job = await medplum.post(
-    medplum.fhirUrl("Bot", botId, "$execute"),
-    input,
-    ContentType.JSON,
-    { headers: { Prefer: "respond-async" }, pollStatusOnAccepted: true }
-  );
-  const output = job.output?.parameter ?? [];
-  const body = output.find((p) => p.name === "responseBody")?.valueString;
-  if (job.status !== "completed" || body === void 0) {
-    const outcome = output.find((p) => p.resource)?.resource;
-    throw new Error(`The checker's job ended ${job.status}: ${normalizeErrorString2(outcome)}`);
+var NOT_READY = /currently in the following state: Pending|An update is in progress for resource/;
+var READY_WAIT_MS = 2e3;
+var READY_TIMEOUT_MS = 6e4;
+async function runPage(medplum, botId, input, wait = (ms3) => new Promise((resolve4) => setTimeout(resolve4, ms3))) {
+  for (let waited = 0; ; waited += READY_WAIT_MS) {
+    const job = await medplum.post(
+      medplum.fhirUrl("Bot", botId, "$execute"),
+      input,
+      ContentType.JSON,
+      { headers: { Prefer: "respond-async" }, pollStatusOnAccepted: true }
+    );
+    const output = job.output?.parameter ?? [];
+    const body = output.find((p) => p.name === "responseBody")?.valueString;
+    if (job.status === "completed" && body !== void 0) return JSON.parse(body);
+    const reason = normalizeErrorString2(output.find((p) => p.resource)?.resource);
+    if (!NOT_READY.test(reason)) {
+      throw new Error(`The checker's job ended ${job.status}: ${reason}`);
+    }
+    if (waited >= READY_TIMEOUT_MS) {
+      throw new Error(
+        `The checker bot is still not ready after ${READY_TIMEOUT_MS / 1e3}s: ${reason}`
+      );
+    }
+    await wait(READY_WAIT_MS);
   }
-  return JSON.parse(body);
 }
 function merge(saved, type, page) {
   type.read += page.read;
@@ -2351,7 +2362,7 @@ function printRoutes(routing, typeNames) {
     " * The content that selects each profile: a row matches a resource when, for",
     " * every key, the element holds one of its patterns (`matches` in _plumb.ts).",
     " */",
-    "export const routes = {",
+    "const routes = {",
     ...Object.keys(routing.routes).sort().flatMap((type) => printRows(type, routing.routes[type] ?? [])),
     "} as const;",
     "",
@@ -2491,7 +2502,7 @@ export function pickProfiled<U extends ProfileUrl>(resources: readonly Resource[
 }
 
 /** A resource as the server returns it, with its id. The same as \`WithId\` in @medplum/core. */
-export type WithId<T> = T & { id: string };
+type WithId<T> = T & { id: string };
 
 /**
  * The part of a \`MedplumClient\` the reads use, so the generated code needs no
@@ -2500,14 +2511,17 @@ export type WithId<T> = T & { id: string };
 export interface ProfiledReader {
   readResource(resourceType: ResourceType, id: string): Promise<Resource>;
   readReference(reference: Reference): Promise<Resource>;
-  searchResources(resourceType: ResourceType, query: URLSearchParams): Promise<Resource[]>;
+  searchResources(resourceType: ResourceType, query: string[][]): Promise<Resource[]>;
 }
 
-/** A search query, in any form \`medplum.searchResources\` takes. */
+/**
+ * A search query, in any form \`medplum.searchResources\` takes: a string, a
+ * URLSearchParams or any other list of pairs, or a record. Typed without
+ * URLSearchParams, so the generated code compiles without the DOM lib.
+ */
 export type ProfiledQuery =
-  | URLSearchParams
   | string
-  | string[][]
+  | Iterable<readonly string[]>
   | Record<string, string | number | boolean | readonly (string | number | boolean)[] | undefined>;
 
 /**
@@ -2544,25 +2558,38 @@ export async function searchProfiled<U extends ProfileUrl>(
   query: ProfiledQuery = {},
 ): Promise<WithId<ProfileTypes[U]>[]> {
   const params = searchParams(query);
-  for (const key of params.keys()) {
-    const name = key.split(':')[0] ?? key;
+  for (const [key] of params) {
+    const name = key?.split(':')[0] ?? '';
     if (subsets.includes(name) || includes.includes(name)) throw refusal(profile, name);
   }
-  params.append('_profile', (accepts[profile] ?? [profile]).join(','));
+  params.push(['_profile', (accepts[profile] ?? [profile]).join(',')]);
   const found = await medplum.searchResources(typeOf[profile] as ResourceType, params);
   return pickProfiled(found, profile) as WithId<ProfileTypes[U]>[];
 }
 
-function searchParams(query: ProfiledQuery): URLSearchParams {
-  if (typeof query === 'string' || query instanceof URLSearchParams) return new URLSearchParams(query);
-  const params = new URLSearchParams();
-  const pairs = Array.isArray(query) ? query : Object.entries(query);
+function searchParams(query: ProfiledQuery): string[][] {
+  if (typeof query === 'string') {
+    return query
+      .replace(/^\\?/, '')
+      .split('&')
+      .filter((pair) => pair !== '')
+      .map((pair) => {
+        const at = pair.indexOf('=');
+        const [key, value] = at === -1 ? [pair, ''] : [pair.slice(0, at), pair.slice(at + 1)];
+        return [decode(key), decode(value)];
+      });
+  }
+  const pairs = Symbol.iterator in query ? [...(query as Iterable<readonly string[]>)] : Object.entries(query);
+  const params: string[][] = [];
   for (const [key, value] of pairs) {
-    for (const v of [value].flat()) if (key !== undefined && v !== undefined) params.append(key, String(v));
+    for (const v of [value].flat()) if (key !== undefined && v !== undefined) params.push([key, String(v)]);
   }
   return params;
 }
 
+// As URLSearchParams decodes: '+' is a space.
+const decode = (text: string) => decodeURIComponent(text.replace(/\\+/g, ' '));
+
 function refusal(profile: ProfileUrl, name: string): ProfileReadError {
   const why = subsets.includes(name)
     ? \`a subset is not a \${short(profile)}. Use medplum.searchResources for a subset.\`
@@ -2597,7 +2624,7 @@ function printReads(models, routing) {
       "required",
       "Record<ProfileUrl, readonly (readonly string[])[]>",
       selected.map((m) => [m.url, m.required])
-    ).map((line, i) => i === 0 ? `export ${line}` : line),
+    ),
     "",
     "/** The stamps a read accepts as each profile: its own URL, and each selected profile deriving from it. */",
     ...printTable(
@@ -2761,7 +2788,21 @@ function childrenOf(elements, key) {
     Object.entries(elements).filter(([k]) => k.startsWith(prefix)).map(([k, e]) => [k.slice(prefix.length), e])
   );
 }
-var firstSentence = (text) => text?.split(/(?<=\.)\s/)[0]?.trim();
+var ABBREVIATION = /\b(?:e\.g|i\.e|etc|vs|cf)\.$/i;
+function firstSentence(text) {
+  if (text === void 0) return void 0;
+  let depth = 0;
+  for (let i = 0; i < text.length; i++) {
+    const c = text[i];
+    if (c === "(") depth++;
+    else if (c === ")") depth = Math.max(0, depth - 1);
+    else if (c === "." && depth === 0 && /\s/.test(text[i + 1] ?? "")) {
+      const sentence = text.slice(0, i + 1);
+      if (!ABBREVIATION.test(sentence)) return sentence.trim();
+    }
+  }
+  return text.trim();
+}
 var ProfileTransform = class {
   notes = [];
   warnings = [];
@@ -3558,23 +3599,23 @@ function buildFsh(project, options = {}) {
   return { ok: errors.length === 0, counts, warnings: messages.warn, errors };
 }
 function findSushi(project) {
-  let manifest;
+  let manifest2;
   try {
-    manifest = createRequire(join6(project, "package.json")).resolve("fsh-sushi/package.json");
+    manifest2 = createRequire(join6(project, "package.json")).resolve("fsh-sushi/package.json");
   } catch {
     return {
       code: "sushi-not-installed",
       message: `"fsh" needs SUSHI, and none is installed for ${project}. Run npm install --save-dev fsh-sushi.`
     };
   }
-  const pkg = JSON.parse(readFileSync5(manifest, "utf8"));
+  const pkg = JSON.parse(readFileSync5(manifest2, "utf8"));
   if (Number.parseInt(pkg.version, 10) < OLDEST) {
     return {
       code: "sushi-too-old",
       message: `"fsh" needs SUSHI ${OLDEST} or later; ${pkg.version} is installed. Run npm install --save-dev fsh-sushi@latest.`
     };
   }
-  return { bin: join6(dirname4(manifest), typeof pkg.bin === "string" ? pkg.bin : pkg.bin.sushi) };
+  return { bin: join6(dirname4(manifest2), typeof pkg.bin === "string" ? pkg.bin : pkg.bin.sushi) };
 }
 function parseLog(text) {
   const messages = [];
@@ -4004,12 +4045,18 @@ var PROBLEMS = 1;
 var USAGE_ERROR = 2;
 function packageDir() {
   let dir = dirname5(fileURLToPath(import.meta.url));
-  while (!existsSync6(join8(dir, "package.json"))) dir = dirname5(dir);
+  while (manifest(dir)?.name !== "plumb-fhir") {
+    if (dir === dirname5(dir)) throw new Error("plumb: cannot find the plumb-fhir package.json.");
+    dir = dirname5(dir);
+  }
   return dir;
 }
+function manifest(dir) {
+  const file = join8(dir, "package.json");
+  return existsSync6(file) ? JSON.parse(readFileSync6(file, "utf8")) : void 0;
+}
 function version() {
-  const file = join8(packageDir(), "package.json");
-  return JSON.parse(readFileSync6(file, "utf8")).version;
+  return manifest(packageDir())?.version ?? "";
 }
 var time = (ms3) => ms3 < 1e3 ? `${ms3}ms` : `${(ms3 / 1e3).toFixed(1)}s`;
 function formatStep(step, out) {