pindex 1.5.0 → 1.7.0

package/README.md

@@ -63,25 +63,39 @@ Token savings are tracked per session and visible in a live web dashboard.
 
 ## When Is PindeX Worth Using?
 
-PindeX adds a fixed overhead per API turn (tool definitions are sent with every request). This overhead pays off only when the project is large enough that the savings from avoiding full-file reads exceed that cost.
+PindeX adds a fixed overhead per API turn (its 14 tool definitions are sent with every request). The overhead pays off when the project is large enough — and the questions complex enough — that the savings from targeted symbol lookups exceed that cost.
 
-**Benchmark results** (5 identical tasks, synthetic TypeScript API codebase, Claude Sonnet 4.6):
+### Realism benchmark (Sonnet 4.6, N=1, 6 Q&A tasks per codebase)
 
-| Config | Total input tokens | vs. baseline |
-|---|---|---|
-| baseline (read_file / glob) | 167 K | — |
-| PindeX (8 core tools, manifest injection) | 246 K | **+47 %** |
+A/B comparison: vanilla Claude Code (no PindeX MCP server, only native `Read`/`Grep`/`Glob`) vs. Claude Code with PindeX registered, on identical prompts.
+
+| Codebase | Baseline tokens | PindeX tokens | Ratio | Reduction |
+|---|---:|---:|---:|---|
+| PindeX itself (~50 files) | 742 607 | 603 160 | 0.812 | **−19 %** |
+| `microsoft/typescript-eslint` (~600 files) | 948 848 | 779 469 | 0.821 | **−18 %** |
+
+**Where the savings come from**: multi-hop / dependency-graph queries (e.g. "which modules does `src/indexer/index.ts` import?", "explain how `processParsedFile` interacts with the AST diff engine") deliver per-task ratios of 0.55 / 0.65 — PindeX wins clearly. Single-symbol lookups (e.g. "where is class X defined?") wash to ratio ~1.0; Claude can read the project's `CLAUDE.md` from the prompt cache and answer directly without any file reads in either condition.
+
+100 % cache-read share in both conditions means the 14-tool overhead is fully amortised by Anthropic's prompt cache after the first turn. There is no latency penalty.
 
-The test project had only **25 files at ~76 lines/file on average** — too small for PindeX to break even. The tool-definition overhead (~800 tokens/turn) outweighed the savings from narrower reads.
+Full report: [`benchmarks/results/2026-04-25-realism-3.md`](benchmarks/results/2026-04-25-realism-3.md). Re-run yourself with `npm run bench:realism`.
 
-**Rule of thumb — PindeX is beneficial when:**
+### Caveats
+
+- **N=1 across 12 tasks total.** Stochastic variance means the headline number is in the 15–25 % range, not a precise 18.5 %. For marketing-grade numbers, repeat at N=3.
+- **Q&A workload only.** Coding tasks ("implement feature X") are not measured; the cost profile is likely different and possibly less favourable.
+- **TypeScript-heavy codebases.** Both targets are pure TS / TS-monorepo. PindeX' regex extractors for Python / Java / Go / Rust have lower symbol-extraction quality than tree-sitter-typescript; the benefit on those stacks may be smaller.
+- **Older marketing copy claimed "80–90 % token reduction".** That number was aspirational and is not what the realism benchmark produces. The honest figure is ~18–19 %.
+
+### Rule of thumb
+
+PindeX is beneficial when:
 
 | Condition | Threshold |
 |---|---|
 | Number of files | ≥ 40 |
 | Average file length | ≥ 150 lines/file |
-
-For projects above these thresholds (e.g. the PindeX codebase itself with 80+ files), targeted symbol lookups consistently return far less than a full-file read, and the fixed overhead amortises over many turns.
+| Question type | Multi-hop / dependency / impact analysis (single-symbol lookups break even) |
 
 **Built-in recommendation:** `get_project_overview` always returns an `index_recommendation` field:
 
@@ -96,7 +110,7 @@ For projects above these thresholds (e.g. the PindeX codebase itself with 80+ fi
 }
 ```
 
-> **A note on the savings numbers:** PindeX can only measure tokens that flow through its own tools. It has no visibility into tokens used by `Write`, `Read`, `Bash`, or other non-PindeX operations. In sessions focused on exploring an unfamiliar codebase the savings are most pronounced; in sessions that are mostly editing, PindeX reduces only the exploration portion.
+> **Where PindeX's value is largest:** sessions that bounce across many files (impact analysis, refactoring research, onboarding to an unfamiliar codebase). Sessions that are mostly editing one file get little benefit and may pay net overhead.
 
 ---
 

package/dist/cli/daemon.d.ts

@@ -2,7 +2,7 @@
 export declare function getDaemonPid(projectHash?: string): number | null;
 /** Returns true if the daemon is currently running for the given project. */
 export declare function isDaemonRunning(projectHash?: string): boolean;
-/** Writes the PID file for the given project. */
+/** Writes the PID file for the given project (owner-only, SEC-14). */
 export declare function writePidFile(pid: number, projectHash?: string): void;
 /** Removes the PID file. */
 export declare function removePidFile(projectHash?: string): void;

package/dist/cli/daemon.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"daemon.d.ts","sourceRoot":"","sources":["../../src/cli/daemon.ts"],"names":[],"mappings":"AAoBA,4EAA4E;AAC5E,wBAAgB,YAAY,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAUhE;AAED,6EAA6E;AAC7E,wBAAgB,eAAe,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,OAAO,CAE7D;AAeD,sEAAsE;AACtE,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAEpE;AAED,4BAA4B;AAC5B,wBAAgB,aAAa,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAGxD;AAED,yDAAyD;AACzD,wBAAsB,UAAU,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAqBpE;AAED,8DAA8D;AAC9D,wBAAsB,UAAU,CAAC,WAAW,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAQpE"}

package/dist/cli/daemon.js

@@ -1,15 +1,15 @@
-import { existsSync, readFileSync, writeFileSync, unlinkSync, mkdirSync } from 'node:fs';
+import { existsSync, readFileSync, unlinkSync, mkdirSync } from 'node:fs';
 import { join } from 'node:path';
-import { getPindexHome, getProjectsDir, hashProjectPath } from './project-detector.js';
+import { getProjectsDir, hashProjectPath, ensurePindexHome, writeFileSecure, } from './project-detector.js';
 /** Returns the PID file path for a given project (or the global fallback). */
 function getPidFilePath(projectHash) {
     if (projectHash) {
         const dir = join(getProjectsDir(), projectHash);
         if (!existsSync(dir))
-            mkdirSync(dir, { recursive: true });
+            mkdirSync(dir, { recursive: true, mode: 0o700 });
         return join(dir, 'daemon.pid');
     }
-    return join(getPindexHome(), 'daemon.pid');
+    return join(ensurePindexHome(), 'daemon.pid');
 }
 /** Returns the PID of the running daemon for the given project, or null. */
 export function getDaemonPid(projectHash) {
@@ -29,9 +29,23 @@ export function getDaemonPid(projectHash) {
 export function isDaemonRunning(projectHash) {
     return getDaemonPid(projectHash) !== null;
 }
-/** Writes the PID file for the given project. */
+/** Best-effort check that a PID belongs to a pindex/node process before we signal
+ *  it, guarding against PID reuse killing an unrelated process (SEC-14). On
+ *  platforms without /proc (macOS/Windows) the check is skipped (returns true). */
+function isLikelyPindexProcess(pid) {
+    try {
+        const cmdline = readFileSync(`/proc/${pid}/cmdline`, 'utf-8');
+        if (!cmdline)
+            return true; // empty — cannot tell, do not block
+        return /pindex|node/i.test(cmdline);
+    }
+    catch {
+        return true; // /proc unavailable or unreadable — do not block stop
+    }
+}
+/** Writes the PID file for the given project (owner-only, SEC-14). */
 export function writePidFile(pid, projectHash) {
-    writeFileSync(getPidFilePath(projectHash), String(pid), 'utf-8');
+    writeFileSecure(getPidFilePath(projectHash), String(pid));
 }
 /** Removes the PID file. */
 export function removePidFile(projectHash) {
@@ -46,6 +60,11 @@ export async function stopDaemon(projectHash) {
         console.log('No running daemon found.');
         return;
     }
+    if (!isLikelyPindexProcess(pid)) {
+        console.error('Refusing to stop: PID does not look like a pindex daemon (stale PID file?).');
+        removePidFile(projectHash);
+        return;
+    }
     try {
         process.kill(pid, 'SIGTERM');
         removePidFile(projectHash);

package/dist/cli/daemon.js.map

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package/dist/cli/federate.d.ts.map

@@ -1 +1 @@
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package/dist/cli/federate.js

@@ -2,6 +2,7 @@ import { existsSync, readFileSync, writeFileSync } from 'node:fs';
 import { join, resolve } from 'node:path';
 import { GlobalRegistry, findProjectRoot, } from './project-detector.js';
 import { assignName } from '../federation/registry-name.js';
+import { parseFederationRepos, joinFederationRepos } from '../federation/repos-env.js';
 function readMcpJson(projectRoot) {
     const path = join(projectRoot, '.mcp.json');
     if (!existsSync(path)) {
@@ -22,14 +23,6 @@ function ensurePindexEnv(mcp) {
     }
     return mcp.mcpServers.pindex.env;
 }
-function parseFederationEnvList(value) {
-    if (!value)
-        return [];
-    return value
-        .split(/[:,]/)
-        .map((s) => s.trim())
-        .filter(Boolean);
-}
 export async function federateAdd(cwd, targetPath, options) {
     const projectRoot = findProjectRoot(resolve(cwd));
     const targetRoot = resolve(targetPath);
@@ -69,10 +62,10 @@ export async function federateAdd(cwd, targetPath, options) {
     registry.replace(updated);
     const mcp = readMcpJson(projectRoot);
     const env = ensurePindexEnv(mcp);
-    const list = parseFederationEnvList(env.FEDERATION_REPOS);
+    const list = parseFederationRepos(env.FEDERATION_REPOS);
     if (!list.includes(targetRoot))
         list.push(targetRoot);
-    env.FEDERATION_REPOS = list.join(':');
+    env.FEDERATION_REPOS = joinFederationRepos(list);
     writeMcpJson(projectRoot, mcp);
     console.log(`federated '${name}' (path: ${targetRoot}). Restart the MCP server to pick up the change.`);
 }
@@ -96,9 +89,9 @@ export async function federateRemove(cwd, nameOrPath) {
     registry.replace(updated);
     const mcp = readMcpJson(projectRoot);
     const env = ensurePindexEnv(mcp);
-    const list = parseFederationEnvList(env.FEDERATION_REPOS).filter((p) => p !== match.path);
+    const list = parseFederationRepos(env.FEDERATION_REPOS).filter((p) => p !== match.path);
     if (list.length > 0) {
-        env.FEDERATION_REPOS = list.join(':');
+        env.FEDERATION_REPOS = joinFederationRepos(list);
     }
     else {
         delete env.FEDERATION_REPOS;

package/dist/cli/federate.js.map

@@ -1 +1 @@
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package/dist/cli/index.js

@@ -197,10 +197,14 @@ async function main() {
                     break;
                 }
                 const { spawn } = await import('node:child_process');
-                spawn('pindex-gui', ['--port', String(port)], {
+                const os = await import('node:os');
+                // Spawn without shell:true to avoid a latent shell-injection sink if the
+                // arg list ever grows (SEC-15). On Windows the bin is a .cmd shim, which
+                // requires the explicit extension when not going through a shell.
+                const guiBin = os.platform() === 'win32' ? 'pindex-gui.cmd' : 'pindex-gui';
+                spawn(guiBin, ['--port', String(port)], {
                     detached: true,
                     stdio: 'ignore',
-                    shell: true,
                 }).unref();
                 // Wait for server to be ready (max 3s)
                 for (let i = 0; i < 15; i++) {

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/cli/init.d.ts.map

@@ -1 +1 @@
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package/dist/cli/init.js

@@ -1,10 +1,11 @@
 import { writeFileSync, existsSync, mkdirSync, readFileSync, appendFileSync, unlinkSync } from 'node:fs';
 import { resolve, join } from 'node:path';
 import { findProjectRoot, getProjectIndexPath, GlobalRegistry, } from './project-detector.js';
+import { joinFederationRepos } from '../federation/repos-env.js';
 // ─── .mcp.json generation ─────────────────────────────────────────────────
 export function writeMcpJson(projectRoot, entry) {
     const federationEnv = entry.federatedRepos.length > 0
-        ? { FEDERATION_REPOS: entry.federatedRepos.map((r) => r.path).join(':') }
+        ? { FEDERATION_REPOS: joinFederationRepos(entry.federatedRepos.map((r) => r.path)) }
         : {};
     const config = {
         mcpServers: {

package/dist/cli/init.js.map

@@ -1 +1 @@
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package/dist/cli/project-detector.d.ts

@@ -4,6 +4,13 @@ export declare function getPindexHome(): string;
 export declare function getMcpIndexerHome(): string;
 /** Returns the projects directory within ~/.pindex. */
 export declare function getProjectsDir(): string;
+/** Creates ~/.pindex with owner-only (0700) perms and tightens it if it already
+ *  exists, so registry/config/PID files are not world-readable on a shared host
+ *  (SEC-13). Best-effort: chmod failures (e.g. on Windows) are ignored. */
+export declare function ensurePindexHome(): string;
+/** Writes a file with owner-only (0600) permissions, tightening any pre-existing
+ *  file too (writeFileSync's `mode` only applies on creation). SEC-13/SEC-14. */
+export declare function writeFileSecure(path: string, data: string): void;
 /** Returns a deterministic hash for a project path (used as its directory name). */
 export declare function hashProjectPath(projectPath: string): string;
 /** Returns the index DB path for a given project (stored locally in {projectPath}/.pindex/). */

package/dist/cli/project-detector.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"project-detector.d.ts","sourceRoot":"","sources":["../../src/cli/project-detector.ts"],"names":[],"mappings":"AAMA,wFAAwF;AACxF,wBAAgB,aAAa,IAAI,MAAM,CAWtC;AAED,sCAAsC;AACtC,wBAAgB,iBAAiB,IAAI,MAAM,CAE1C;AAED,uDAAuD;AACvD,wBAAgB,cAAc,IAAI,MAAM,CAEvC;AAED;;2EAE2E;AAC3E,wBAAgB,gBAAgB,IAAI,MAAM,CAQzC;AAED;iFACiF;AACjF,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAGhE;AAED,oFAAoF;AACpF,wBAAgB,eAAe,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAG3D;AAED,gGAAgG;AAChG,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAE/D;AAED,iGAAiG;AACjG,wBAAgB,kBAAkB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,IAAI,EAAE,MAAM,CAAC;CACd;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAgBxD;AASD,MAAM,WAAW,sBAAsB;IACrC,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,cAAc,EAAE,MAAM,CAAC;IACvB,cAAc,EAAE,sBAAsB,EAAE,CAAC;IACzC,OAAO,EAAE,MAAM,CAAC;CACjB;AAOD,qBAAa,cAAc;IACzB,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;;IAMtC,IAAI,IAAI,aAAa,EAAE;IA8CvB,OAAO,CAAC,KAAK;IAMb,kFAAkF;IAClF,MAAM,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,CAAC,aAAa,CAAC,GAAG,aAAa;IAkC1E,0EAA0E;IAC1E,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,EAAE,sBAAsB,EAAE,GAAG,IAAI;IAU7E,gFAAgF;IAChF,OAAO,CAAC,KAAK,EAAE,aAAa,GAAG,IAAI;IAYnC,MAAM,CAAC,WAAW,EAAE,MAAM,GAAG,IAAI;IAMjC,IAAI,IAAI,aAAa,EAAE;IAIvB,SAAS,CAAC,WAAW,EAAE,MAAM,GAAG,aAAa,GAAG,SAAS;CAI1D"}

package/dist/cli/project-detector.js

@@ -1,7 +1,7 @@
 import { createHash } from 'node:crypto';
 import { resolve, join, dirname } from 'node:path';
 import { homedir } from 'node:os';
-import { existsSync, readFileSync, writeFileSync, mkdirSync, renameSync } from 'node:fs';
+import { existsSync, readFileSync, writeFileSync, mkdirSync, renameSync, chmodSync } from 'node:fs';
 import { assignName } from '../federation/registry-name.js';
 /** Returns the global ~/.pindex directory (migrates from ~/.mcp-indexer if present). */
 export function getPindexHome() {
@@ -25,6 +25,31 @@ export function getMcpIndexerHome() {
 export function getProjectsDir() {
     return join(getPindexHome(), 'projects');
 }
+/** Creates ~/.pindex with owner-only (0700) perms and tightens it if it already
+ *  exists, so registry/config/PID files are not world-readable on a shared host
+ *  (SEC-13). Best-effort: chmod failures (e.g. on Windows) are ignored. */
+export function ensurePindexHome() {
+    const home = getPindexHome();
+    if (!existsSync(home)) {
+        mkdirSync(home, { recursive: true, mode: 0o700 });
+    }
+    else {
+        try {
+            chmodSync(home, 0o700);
+        }
+        catch { /* best-effort */ }
+    }
+    return home;
+}
+/** Writes a file with owner-only (0600) permissions, tightening any pre-existing
+ *  file too (writeFileSync's `mode` only applies on creation). SEC-13/SEC-14. */
+export function writeFileSecure(path, data) {
+    writeFileSync(path, data, { encoding: 'utf-8', mode: 0o600 });
+    try {
+        chmodSync(path, 0o600);
+    }
+    catch { /* best-effort */ }
+}
 /** Returns a deterministic hash for a project path (used as its directory name). */
 export function hashProjectPath(projectPath) {
     const normalized = resolve(projectPath);
@@ -114,11 +139,9 @@ export class GlobalRegistry {
         return projects;
     }
     write(entries) {
-        const home = getPindexHome();
-        if (!existsSync(home))
-            mkdirSync(home, { recursive: true });
+        ensurePindexHome();
         const data = { version: 1, projects: entries };
-        writeFileSync(this.registryPath, JSON.stringify(data, null, 2), 'utf-8');
+        writeFileSecure(this.registryPath, JSON.stringify(data, null, 2));
     }
     /** Add or update a project entry. Returns the (possibly newly assigned) entry. */
     upsert(projectPath, extra) {

package/dist/cli/project-detector.js.map

@@ -1 +1 @@
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+{"version":3,"file":"project-detector.js","sourceRoot":"","sources":["../../src/cli/project-detector.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACnD,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAClC,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,aAAa,EAAE,SAAS,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AACpG,OAAO,EAAE,UAAU,EAAE,MAAM,gCAAgC,CAAC;AAE5D,wFAAwF;AACxF,MAAM,UAAU,aAAa;IAC3B,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,EAAE,EAAE,SAAS,CAAC,CAAC;IAC3C,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,EAAE,EAAE,cAAc,CAAC,CAAC;IAChD,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QAChD,IAAI,CAAC;YACH,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAC/B,CAAC;QAAC,MAAM,CAAC;YACP,6DAA6D;QAC/D,CAAC;IACH,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,sCAAsC;AACtC,MAAM,UAAU,iBAAiB;IAC/B,OAAO,aAAa,EAAE,CAAC;AACzB,CAAC;AAED,uDAAuD;AACvD,MAAM,UAAU,cAAc;IAC5B,OAAO,IAAI,CAAC,aAAa,EAAE,EAAE,UAAU,CAAC,CAAC;AAC3C,CAAC;AAED;;2EAE2E;AAC3E,MAAM,UAAU,gBAAgB;IAC9B,MAAM,IAAI,GAAG,aAAa,EAAE,CAAC;IAC7B,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;QACtB,SAAS,CAAC,IAAI,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IACpD,CAAC;SAAM,CAAC;QACN,IAAI,CAAC;YAAC,SAAS,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;QAAC,CAAC;QAAC,MAAM,CAAC,CAAC,iBAAiB,CAAC,CAAC;IAC7D,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED;iFACiF;AACjF,MAAM,UAAU,eAAe,CAAC,IAAY,EAAE,IAAY;IACxD,aAAa,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IAC9D,IAAI,CAAC;QAAC,SAAS,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IAAC,CAAC;IAAC,MAAM,CAAC,CAAC,iBAAiB,CAAC,CAAC;AAC7D,CAAC;AAED,oFAAoF;AACpF,MAAM,UAAU,eAAe,CAAC,WAAmB;IACjD,MAAM,UAAU,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;IACxC,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;AAC/E,CAAC;AAED,gGAAgG;AAChG,MAAM,UAAU,mBAAmB,CAAC,WAAmB;IACrD,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,SAAS,EAAE,UAAU,CAAC,CAAC;AAC3D,CAAC;AAED,iGAAiG;AACjG,MAAM,UAAU,kBAAkB,CAAC,WAAmB;IACpD,OAAO,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,EAAE,SAAS,EAAE,WAAW,CAAC,CAAC;AAC5D,CAAC;AAQD;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,QAAgB;IAC9C,MAAM,OAAO,GAAG,CAAC,cAAc,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,EAAE,gBAAgB,EAAE,SAAS,CAAC,CAAC;IAC9F,IAAI,OAAO,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAEhC,iDAAiD;IACjD,OAAO,IAAI,EAAE,CAAC;QACZ,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;YAC7B,IAAI,UAAU,CAAC,IAAI,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC,EAAE,CAAC;gBACtC,OAAO,OAAO,CAAC;YACjB,CAAC;QACH,CAAC;QACD,MAAM,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC;QAChC,IAAI,MAAM,KAAK,OAAO;YAAE,MAAM,CAAC,0BAA0B;QACzD,OAAO,GAAG,MAAM,CAAC;IACnB,CAAC;IACD,OAAO,OAAO,CAAC,QAAQ,CAAC,CAAC;AAC3B,CAAC;AAED,wFAAwF;AACxF,SAAS,kBAAkB,CAAC,IAAY;IACtC,OAAO,IAAI,GAAG,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,IAAI,CAAC,CAAC;AACxD,CAAC;AAuBD,MAAM,OAAO,cAAc;IACR,YAAY,CAAS;IAEtC;QACE,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,aAAa,EAAE,EAAE,eAAe,CAAC,CAAC;IAC7D,CAAC;IAED,IAAI;QACF,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,YAAY,CAAC;YAAE,OAAO,EAAE,CAAC;QAC9C,IAAI,MAAoB,CAAC;QACzB,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,IAAI,CAAC,YAAY,EAAE,OAAO,CAAC,CAAiB,CAAC;QAChF,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,sCAAsC,IAAI,CAAC,YAAY,KAAK,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;YAClG,OAAO,EAAE,CAAC;QACZ,CAAC;QACD,MAAM,QAAQ,GAAG,MAAM,CAAC,QAAQ,IAAI,EAAE,CAAC;QAEvC,sDAAsD;QACtD,IAAI,QAAQ,GAAG,KAAK,CAAC;QACrB,MAAM,SAAS,GAAG,IAAI,GAAG,CACvB,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAe,EAAE,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CACnE,CAAC;QACF,KAAK,MAAM,CAAC,IAAI,QAAQ,EAAE,CAAC;YACzB,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;gBACZ,CAAC,CAAC,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,IAAI,EAAE,SAAS,CAAC,CAAC;gBACvC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;gBACtB,QAAQ,GAAG,IAAI,CAAC;YAClB,CAAC;YACD,+EAA+E;YAC/E,IAAI,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,cAAc,CAAC,EAAE,CAAC;gBACpC,MAAM,UAAU,GAA6B,EAAE,CAAC;gBAChD,KAAK,MAAM,IAAI,IAAI,CAAC,CAAC,cAA2B,EAAE,CAAC;oBACjD,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;wBAC7B,mEAAmE;wBACnE,sDAAsD;wBACtD,MAAM,WAAW,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,IAAI,CAAC,CAAC;wBAC1D,MAAM,IAAI,GAAG,WAAW,EAAE,IAAI,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,IAAI,WAAW,CAAC,CAAC;wBACzE,UAAU,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;wBACtC,QAAQ,GAAG,IAAI,CAAC;oBAClB,CAAC;yBAAM,IAAI,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,MAAM,IAAI,IAAI,IAAI,MAAM,IAAI,IAAI,EAAE,CAAC;wBAChF,UAAU,CAAC,IAAI,CAAC,IAA8B,CAAC,CAAC;oBAClD,CAAC;gBACH,CAAC;gBACD,CAAC,CAAC,cAAc,GAAG,UAAU,CAAC;YAChC,CAAC;QACH,CAAC;QACD,IAAI,QAAQ,EAAE,CAAC;YACb,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC;QACvB,CAAC;QACD,OAAO,QAAQ,CAAC;IAClB,CAAC;IAEO,KAAK,CAAC,OAAwB;QACpC,gBAAgB,EAAE,CAAC;QACnB,MAAM,IAAI,GAAiB,EAAE,OAAO,EAAE,CAAC,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC;QAC7D,eAAe,CAAC,IAAI,CAAC,YAAY,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IACpE,CAAC;IAED,kFAAkF;IAClF,MAAM,CAAC,WAAmB,EAAE,KAA8B;QACxD,MAAM,cAAc,GAAG,OAAO,CAAC,WAAW,CAAC,CAAC;QAC5C,MAAM,IAAI,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;QAC7C,MAAM,QAAQ,G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package/dist/cli/setup.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../src/cli/setup.ts"],"names":[],"mappings":"AAsBA,6CAA6C;AAC7C,wBAAgB,iBAAiB,IAAI,IAAI,CAQxC;AAED,qFAAqF;AACrF,wBAAgB,iBAAiB,IAAI,IAAI,CA4BxC;AAED,+CAA+C;AAC/C,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,CAmB5D;AAED,wCAAwC;AACxC,wBAAsB,QAAQ,IAAI,OAAO,CAAC,IAAI,CAAC,CA+B9C"}
+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../../src/cli/setup.ts"],"names":[],"mappings":"AAsBA,6CAA6C;AAC7C,wBAAgB,iBAAiB,IAAI,IAAI,CAOxC;AAED,qFAAqF;AACrF,wBAAgB,iBAAiB,IAAI,IAAI,CA4BxC;AAED,+CAA+C;AAC/C,wBAAgB,qBAAqB,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,CAmB5D;AAED,wCAAwC;AACxC,wBAAsB,QAAQ,IAAI,OAAO,CAAC,IAAI,CAAC,CA+B9C"}

package/dist/cli/setup.js

@@ -1,7 +1,7 @@
 import { mkdirSync, existsSync, readFileSync, writeFileSync } from 'node:fs';
 import { homedir, platform } from 'node:os';
 import { join } from 'node:path';
-import { getPindexHome } from './project-detector.js';
+import { getPindexHome, ensurePindexHome, writeFileSecure } from './project-detector.js';
 const DEFAULT_CONFIG = {
     version: '1.0.0',
     daemon: {
@@ -20,12 +20,10 @@ const DEFAULT_CONFIG = {
 };
 /** Writes the default global config file. */
 export function writeGlobalConfig() {
-    const home = getPindexHome();
-    if (!existsSync(home))
-        mkdirSync(home, { recursive: true });
+    const home = ensurePindexHome();
     const configPath = join(home, 'config.json');
     if (!existsSync(configPath)) {
-        writeFileSync(configPath, JSON.stringify(DEFAULT_CONFIG, null, 2), 'utf-8');
+        writeFileSecure(configPath, JSON.stringify(DEFAULT_CONFIG, null, 2));
     }
 }
 /** Writes or merges the MCP server registration into Claude Code's global config. */

package/dist/cli/setup.js.map

@@ -1 +1 @@
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package/dist/db/queries.d.ts

@@ -1,5 +1,19 @@
 import type Database from 'better-sqlite3';
 import type { FileRecord, SymbolRecord, UsageRecord, SessionRecord, SymbolKind, DocumentChunkRecord, AstSnapshotRecord, SessionObservationRecord, SessionEventRecord, ObservationType, SessionEventType } from '../types.js';
+/**
+ * Sanitizes a user query for safe use as an FTS5 MATCH expression.
+ *
+ * FTS5 has its own query grammar (AND/OR/NOT/NEAR, `column:term`, `*`, `^`,
+ * parentheses, `+`, phrases). Common code-search tokens such as `parse()`,
+ * `foo:bar`, `C++` or `@decorator` would otherwise be parsed as FTS5 syntax and
+ * either raise a syntax error (silently swallowed as "no results" by the callers'
+ * try/catch) or leak FTS column names via "no such column" errors. We tokenize on
+ * whitespace and wrap each token as a double-quote-escaped phrase, so every term
+ * is matched literally and the MATCH expression is always well-formed.
+ *
+ * Returns an empty-phrase expression when the query has no usable tokens.
+ */
+export declare function sanitizeFtsQuery(query: string): string;
 export interface UpsertFileInput {
     path: string;
     language: string;