pindex 1.3.0 → 1.5.0

package/README.md

@@ -221,31 +221,47 @@ cd /project-b && pindex   # registers project-b, different port + different DB
 
 ### Linking repos (federation)
 
-If you work on a monorepo split into separate repositories, or if one project imports types from another, you can link them:
+Federate other indexed PindeX projects into the current project so all read-only tools can search across them in one query.
+
+**CLI commands:**
 
 ```bash
-cd /project-a
-pindex add /project-b
+cd /my/main-project
+pindex federate add /path/to/other-repo
+pindex federate list
+pindex federate remove other-repo
 ```
 
-This updates `/project-a/.mcp.json` with `FEDERATION_REPOS=/project-b`. After restarting Claude Code in Project A, the MCP tools search **both** codebases:
+Federated repos appear under stable names (the directory basename, with a hash suffix on collision). Every search/lookup tool returns results tagged with `project: <name>`.
 
-- `search_symbols` returns results from both projects (federated results include a `project` field)
-- `get_project_overview` shows stats for all linked projects
+**Scoping queries to federated repos:**
 
-Add more repos at any time:
+To scope a query to a subset of federated repos, use the optional `repos` parameter in any read-only tool:
 
-```bash
-pindex add /project-c   # links a third repo
+```jsonc
+// MCP tool call (example)
+search_symbols({ "query": "AuthService", "repos": ["main", "auth-service"] })
 ```
 
-Remove a link:
+The `repos` parameter accepts a list of project names and restricts results to only those repos. Omit the parameter to search all federated repos + the main project.
+
+**Which tools support federation:**
+
+The 9 read-only tools (`search_symbols`, `find_usages`, `get_symbol`, `get_file_summary`, `get_context`, `get_dependencies`, `get_project_overview`, `search_docs`, `get_doc_chunk`) accept an optional `repos: string[]` param to scope to specific federated repos.
+
+The 5 write/session tools (`reindex`, `save_context`, `get_session_memory`, `start_comparison`, `get_token_stats`) stay strictly local and do not accept the `repos` param.
+
+**Legacy env var:**
+
+The `FEDERATION_REPOS` env var (colon-separated paths) is still supported for backward compatibility and is what the CLI writes to `.mcp.json`:
 
 ```bash
-pindex remove /project-b
+FEDERATION_REPOS=/path/to/repo-a:/path/to/repo-b pindex-server
 ```
 
-### View all projects
+For new setups, prefer the CLI commands (`pindex federate add/remove/list`) over manually editing the env var.
+
+**View all projects:**
 
 ```bash
 pindex status
@@ -523,6 +539,7 @@ These are set automatically in the generated `.mcp.json` — you rarely need to
 | `TOKEN_PRICE_PER_MILLION` | `3.00` | USD price per million tokens — used for cost estimates |
 | `PINDEX_PARSE_WORKERS` | _(empty)_ | Parse workers (0=sync, empty=auto) |
 | `PINDEX_BIND_HOST` | `127.0.0.1` | Bind host for monitoring/GUI (default loopback) |
+| `PINDEX_LSP` | `true` | opt-in LSP parsing for Python (set to `false` to force regex) |
 | `FEDERATION_REPOS` | _(empty)_ | Colon-separated absolute paths to linked repositories |
 | `DOCUMENT_PATTERNS` | `**/*.md,**/*.markdown,**/*.yaml,**/*.yml,**/*.txt` | Glob patterns for document files to index alongside code |
 | `OBSERVATION_RETENTION` | `permanent` | How long passive session observations are kept: `permanent`, `session`, or `Nd` (e.g. `30d`) |
@@ -635,6 +652,12 @@ goose session start
 
 ---
 
+### Python (LSP)
+
+PindeX ships with Pyright as an optional dependency. When installed, Pyright's LSP server produces the precise symbol tree instead of the fallback regex extractor. Set `PINDEX_LSP=false` to opt out. If Pyright is missing (for example when installed with `--no-optional`), PindeX logs a one-time warning and falls back to the regex path.
+
+---
+
 ## CLI Reference
 
 ```

package/dist/cli/federate.d.ts

@@ -0,0 +1,6 @@
+export declare function federateAdd(cwd: string, targetPath: string, options: {
+    name?: string;
+}): Promise<void>;
+export declare function federateRemove(cwd: string, nameOrPath: string): Promise<void>;
+export declare function federateList(cwd: string): Promise<void>;
+//# sourceMappingURL=federate.d.ts.map

package/dist/cli/federate.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"federate.d.ts","sourceRoot":"","sources":["../../src/cli/federate.ts"],"names":[],"mappings":"AAqDA,wBAAsB,WAAW,CAC/B,GAAG,EAAE,MAAM,EACX,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE;IAAE,IAAI,CAAC,EAAE,MAAM,CAAA;CAAE,GACzB,OAAO,CAAC,IAAI,CAAC,CA6Df;AAED,wBAAsB,cAAc,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAoCnF;AAED,wBAAsB,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAmB7D"}

package/dist/cli/federate.js

@@ -0,0 +1,128 @@
+import { existsSync, readFileSync, writeFileSync } from 'node:fs';
+import { join, resolve } from 'node:path';
+import { GlobalRegistry, findProjectRoot, } from './project-detector.js';
+import { assignName } from '../federation/registry-name.js';
+function readMcpJson(projectRoot) {
+    const path = join(projectRoot, '.mcp.json');
+    if (!existsSync(path)) {
+        throw new Error(`.mcp.json not found at ${path}. Run 'pindex init' first.`);
+    }
+    return JSON.parse(readFileSync(path, 'utf-8'));
+}
+function writeMcpJson(projectRoot, mcp) {
+    const path = join(projectRoot, '.mcp.json');
+    writeFileSync(path, JSON.stringify(mcp, null, 2));
+}
+function ensurePindexEnv(mcp) {
+    if (!mcp.mcpServers.pindex) {
+        mcp.mcpServers.pindex = { env: {} };
+    }
+    if (!mcp.mcpServers.pindex.env) {
+        mcp.mcpServers.pindex.env = {};
+    }
+    return mcp.mcpServers.pindex.env;
+}
+function parseFederationEnvList(value) {
+    if (!value)
+        return [];
+    return value
+        .split(/[:,]/)
+        .map((s) => s.trim())
+        .filter(Boolean);
+}
+export async function federateAdd(cwd, targetPath, options) {
+    const projectRoot = findProjectRoot(resolve(cwd));
+    const targetRoot = resolve(targetPath);
+    if (!existsSync(targetRoot)) {
+        throw new Error(`Target path does not exist: ${targetRoot}`);
+    }
+    const registry = new GlobalRegistry();
+    const entries = registry.list();
+    const me = entries.find((e) => e.path === projectRoot);
+    if (!me) {
+        throw new Error(`Current project not registered: ${projectRoot}. Run 'pindex init'.`);
+    }
+    const target = entries.find((e) => e.path === targetRoot);
+    if (!target) {
+        throw new Error(`Target not registered: ${targetRoot}. Run 'pindex init' in that directory first.`);
+    }
+    // Check .mcp.json exists in target (validates it was pindex-init-ed)
+    if (!existsSync(join(targetRoot, '.mcp.json'))) {
+        throw new Error(`Target has no .mcp.json: ${targetRoot}. Run 'pindex init' in that directory first.`);
+    }
+    const existingFederated = (me.federatedRepos ?? []);
+    if (existingFederated.some((f) => f.path === targetRoot)) {
+        console.log(`Already federated: ${target.name} (${targetRoot})`);
+        return;
+    }
+    // Allocate a unique name within MY federation set (including my own name).
+    const used = new Set([me.name, ...existingFederated.map((f) => f.name)]);
+    const name = options.name ??
+        (used.has(target.name) ? assignName(targetRoot, used) : target.name);
+    if (options.name && used.has(options.name)) {
+        throw new Error(`Name '${options.name}' already in use in this federation. Provide a different --name.`);
+    }
+    const updated = {
+        ...me,
+        federatedRepos: [...existingFederated, { path: targetRoot, name }],
+    };
+    registry.replace(updated);
+    const mcp = readMcpJson(projectRoot);
+    const env = ensurePindexEnv(mcp);
+    const list = parseFederationEnvList(env.FEDERATION_REPOS);
+    if (!list.includes(targetRoot))
+        list.push(targetRoot);
+    env.FEDERATION_REPOS = list.join(':');
+    writeMcpJson(projectRoot, mcp);
+    console.log(`federated '${name}' (path: ${targetRoot}). Restart the MCP server to pick up the change.`);
+}
+export async function federateRemove(cwd, nameOrPath) {
+    const projectRoot = findProjectRoot(resolve(cwd));
+    const registry = new GlobalRegistry();
+    const me = registry.list().find((e) => e.path === projectRoot);
+    if (!me) {
+        throw new Error(`Current project not registered: ${projectRoot}.`);
+    }
+    const existingFederated = (me.federatedRepos ?? []);
+    const match = existingFederated.find((f) => f.name === nameOrPath || f.path === nameOrPath);
+    if (!match) {
+        const known = existingFederated.map((f) => f.name).join(', ');
+        throw new Error(`No federated repo named '${nameOrPath}' (or matching path). Known: [${known}]`);
+    }
+    const updated = {
+        ...me,
+        federatedRepos: existingFederated.filter((f) => f !== match),
+    };
+    registry.replace(updated);
+    const mcp = readMcpJson(projectRoot);
+    const env = ensurePindexEnv(mcp);
+    const list = parseFederationEnvList(env.FEDERATION_REPOS).filter((p) => p !== match.path);
+    if (list.length > 0) {
+        env.FEDERATION_REPOS = list.join(':');
+    }
+    else {
+        delete env.FEDERATION_REPOS;
+    }
+    writeMcpJson(projectRoot, mcp);
+    console.log(`removed federation '${match.name}' (${match.path}). Restart the MCP server.`);
+}
+export async function federateList(cwd) {
+    const projectRoot = findProjectRoot(resolve(cwd));
+    const registry = new GlobalRegistry();
+    const me = registry.list().find((e) => e.path === projectRoot);
+    if (!me) {
+        console.log(`Current project not registered: ${projectRoot}.`);
+        return;
+    }
+    const existingFederated = (me.federatedRepos ?? []);
+    console.log(`Federated repos (in ${projectRoot}):`);
+    if (existingFederated.length === 0) {
+        console.log(`  (none)`);
+        return;
+    }
+    const longestName = existingFederated.reduce((m, f) => Math.max(m, f.name.length), 0);
+    for (const f of existingFederated) {
+        console.log(`  ${f.name.padEnd(longestName)} ${f.path}`);
+    }
+}
+//# sourceMappingURL=federate.js.map

package/dist/cli/federate.js.map

@@ -0,0 +1 @@
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package/dist/cli/index.js

@@ -9,6 +9,7 @@ import { runMigrations } from '../db/migrations.js';
 import { Indexer } from '../indexer/index.js';
 import { getProjectIndexPath, getProjectsDir, GlobalRegistry, findProjectRoot, hashProjectPath, } from './project-detector.js';
 import { initProject, addFederatedRepo, removeFederatedRepo, injectClaudeMdSection, injectClaudeSettings, removeClaudeMdSection, removeClaudeSettings, removeMcpJson, writeMcpJson, injectGitignore } from './init.js';
+import { federateAdd, federateRemove, federateList } from './federate.js';
 import Database from 'better-sqlite3';
 const BREAK_EVEN_FILES = 40;
 const BREAK_EVEN_AVG_LINES = 150;
@@ -272,6 +273,45 @@ async function main() {
             console.log(`Done. You can remove ~/.pindex (registry) and each project's .pindex/ folder manually to wipe all data.`);
             break;
         }
+        case 'federate': {
+            const sub = args[0];
+            try {
+                switch (sub) {
+                    case 'add': {
+                        const targetPath = args[1];
+                        if (!targetPath) {
+                            console.error('Usage: pindex federate add <path> [--name <name>]');
+                            process.exit(1);
+                        }
+                        const nameFlag = args.indexOf('--name');
+                        const name = nameFlag !== -1 ? args[nameFlag + 1] : undefined;
+                        await federateAdd(process.cwd(), targetPath, { name });
+                        break;
+                    }
+                    case 'remove': {
+                        const target = args[1];
+                        if (!target) {
+                            console.error('Usage: pindex federate remove <name|path>');
+                            process.exit(1);
+                        }
+                        await federateRemove(process.cwd(), target);
+                        break;
+                    }
+                    case 'list': {
+                        await federateList(process.cwd());
+                        break;
+                    }
+                    default:
+                        console.error(`Unknown federate subcommand: ${sub ?? '(none)'}. Use add | remove | list.`);
+                        process.exit(1);
+                }
+            }
+            catch (err) {
+                console.error('Error:', err instanceof Error ? err.message : err);
+                process.exit(1);
+            }
+            break;
+        }
         default:
             console.log(`
   pindex – MCP Codebase Indexer

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/cli/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/cli/init.ts"],"names":[],"mappings":"AAEA,OAAO,EAIL,KAAK,aAAa,EACnB,MAAM,uBAAuB,CAAC;AAI/B,wBAAgB,YAAY,CAC1B,WAAW,EAAE,MAAM,EACnB,KAAK,EAAE,aAAa,GACnB,IAAI,CA2BN;AA8BD;;;;GAIG;AACH,wBAAgB,qBAAqB,CACnC,WAAW,EAAE,MAAM,EACnB,EAAE,KAAa,EAAE;;CAAK,GACrB,OAAO,GAAG,SAAS,GAAG,SAAS,GAAG,SAAS,CAqB7C;AAkCD;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,MAAM,EACnB,EAAE,KAAa,EAAE;;CAAK,GACrB,OAAO,GAAG,SAAS,GAAG,SAAS,CA4CjC;AAID;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,WAAW,EAAE,MAAM,GAClB,OAAO,GAAG,iBAAiB,GAAG,SAAS,CAczC;AAID;;;GAGG;AACH,wBAAsB,WAAW,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA+C5D;AAID;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,GAAG,WAAW,GAAG,SAAS,CAQ9F;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,GAAG,WAAW,GAAG,SAAS,CAyB7F;AAED;;;GAGG;AACH,wBAAgB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,GAAG,SAAS,CAKxE;AAID;;;GAGG;AACH,wBAAsB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAsCnF;AAID,wBAAsB,mBAAmB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBtF"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/cli/init.ts"],"names":[],"mappings":"AAEA,OAAO,EAIL,KAAK,aAAa,EACnB,MAAM,uBAAuB,CAAC;AAI/B,wBAAgB,YAAY,CAC1B,WAAW,EAAE,MAAM,EACnB,KAAK,EAAE,aAAa,GACnB,IAAI,CA2BN;AA8BD;;;;GAIG;AACH,wBAAgB,qBAAqB,CACnC,WAAW,EAAE,MAAM,EACnB,EAAE,KAAa,EAAE;;CAAK,GACrB,OAAO,GAAG,SAAS,GAAG,SAAS,GAAG,SAAS,CAqB7C;AAkCD;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,MAAM,EACnB,EAAE,KAAa,EAAE;;CAAK,GACrB,OAAO,GAAG,SAAS,GAAG,SAAS,CA4CjC;AAID;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,WAAW,EAAE,MAAM,GAClB,OAAO,GAAG,iBAAiB,GAAG,SAAS,CAczC;AAID;;;GAGG;AACH,wBAAsB,WAAW,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA+C5D;AAID;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,GAAG,WAAW,GAAG,SAAS,CAQ9F;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,GAAG,WAAW,GAAG,SAAS,CAyB7F;AAED;;;GAGG;AACH,wBAAgB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,GAAG,SAAS,CAKxE;AAID;;;GAGG;AACH,wBAAsB,gBAAgB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA6CnF;AAID,wBAAsB,mBAAmB,CAAC,GAAG,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAmBtF"}

package/dist/cli/init.js

@@ -1,10 +1,10 @@
 import { writeFileSync, existsSync, mkdirSync, readFileSync, appendFileSync, unlinkSync } from 'node:fs';
-import { resolve, join, basename } from 'node:path';
+import { resolve, join } from 'node:path';
 import { findProjectRoot, getProjectIndexPath, GlobalRegistry, } from './project-detector.js';
 // ─── .mcp.json generation ─────────────────────────────────────────────────
 export function writeMcpJson(projectRoot, entry) {
     const federationEnv = entry.federatedRepos.length > 0
-        ? { FEDERATION_REPOS: entry.federatedRepos.join(':') }
+        ? { FEDERATION_REPOS: entry.federatedRepos.map((r) => r.path).join(':') }
         : {};
     const config = {
         mcpServers: {
@@ -225,7 +225,7 @@ export async function initProject(cwd) {
     if (entry.federatedRepos.length > 0) {
         console.log(`\n  Federated repos (${entry.federatedRepos.length}):`);
         for (const r of entry.federatedRepos)
-            console.log(`    - ${r}`);
+            console.log(`    - ${r.name}  ${r.path}`);
     }
     console.log('\n  ══════════════════════════════════════════\n');
 }
@@ -314,16 +314,22 @@ export async function addFederatedRepo(cwd, repoPath) {
     // Update current project's federated repos list
     const currentEntry = registry.upsert(projectRoot);
     const existing = currentEntry.federatedRepos;
-    if (existing.includes(resolvedRepo)) {
+    if (existing.some((r) => r.path === resolvedRepo)) {
         console.log(`Already linked: ${resolvedRepo}`);
         return;
     }
-    const updated = [...existing, resolvedRepo];
+    // Resolve a name for the newly federated repo
+    const targetEntry = registry.getByPath(resolvedRepo);
+    const usedNames = new Set([currentEntry.name, ...existing.map((r) => r.name)]);
+    const { assignName: _assignName } = await import('../federation/registry-name.js');
+    const repoName = targetEntry?.name && !usedNames.has(targetEntry.name)
+        ? targetEntry.name
+        : _assignName(resolvedRepo, usedNames);
+    const updated = [...existing, { path: resolvedRepo, name: repoName }];
     registry.setFederatedRepos(projectRoot, updated);
     // Re-read to get the updated entry
     const updatedEntry = registry.getByPath(projectRoot);
     writeMcpJson(projectRoot, updatedEntry);
-    const repoName = basename(resolvedRepo);
     console.log(`\n  ✓ Linked: ${repoName}  (${resolvedRepo})`);
     console.log('  .mcp.json updated with FEDERATION_REPOS.\n');
     console.log('  Restart Claude Code to activate cross-repo search.\n');
@@ -338,7 +344,7 @@ export async function removeFederatedRepo(cwd, repoPath) {
         console.error('Project not registered. Run  pindex  first.');
         process.exit(1);
     }
-    const updated = entry.federatedRepos.filter((r) => r !== resolvedRepo);
+    const updated = entry.federatedRepos.filter((r) => r.path !== resolvedRepo);
     registry.setFederatedRepos(projectRoot, updated);
     const updatedEntry = registry.getByPath(projectRoot);
     writeMcpJson(projectRoot, updatedEntry);

package/dist/cli/init.js.map

@@ -1 +1 @@
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package/dist/cli/project-detector.d.ts

@@ -20,12 +20,16 @@ export interface ProjectMeta {
  * Returns the directory containing the first marker found, or startDir if none.
  */
 export declare function findProjectRoot(startDir: string): string;
+export interface FederatedRegistryEntry {
+    path: string;
+    name: string;
+}
 export interface RegistryEntry {
     path: string;
     hash: string;
     name: string;
     monitoringPort: number;
-    federatedRepos: string[];
+    federatedRepos: FederatedRegistryEntry[];
     addedAt: string;
 }
 export declare class GlobalRegistry {
@@ -35,8 +39,10 @@ export declare class GlobalRegistry {
     private write;
     /** Add or update a project entry. Returns the (possibly newly assigned) entry. */
     upsert(projectPath: string, extra?: Partial<RegistryEntry>): RegistryEntry;
-    /** Update the federated repos list for a project. */
-    setFederatedRepos(projectPath: string, repos: string[]): void;
+    /** Update the federated repos list for a project (structured entries). */
+    setFederatedRepos(projectPath: string, repos: FederatedRegistryEntry[]): void;
+    /** Overwrite the registry entry matching entry.path. Inserts if not present. */
+    replace(entry: RegistryEntry): void;
     remove(projectPath: string): void;
     list(): RegistryEntry[];
     getByPath(projectPath: string): RegistryEntry | undefined;

package/dist/cli/project-detector.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"project-detector.d.ts","sourceRoot":"","sources":["../../src/cli/project-detector.ts"],"names":[],"mappings":"AAMA,wFAAwF;AACxF,wBAAgB,aAAa,IAAI,MAAM,CAWtC;AAED,sCAAsC;AACtC,wBAAgB,iBAAiB,IAAI,MAAM,CAE1C;AAED,uDAAuD;AACvD,wBAAgB,cAAc,IAAI,MAAM,CAEvC;AAED,oFAAoF;AACpF,wBAAgB,eAAe,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAG3D;AAED,gGAAgG;AAChG,wBAAgB,mBAAmB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAE/D;AAED,iGAAiG;AACjG,wBAAgB,kBAAkB,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAE9D;AAED,MAAM,WAAW,WAAW;IAC1B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,IAAI,EAAE,MAAM,CAAC;CACd;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAgBxD;AASD,MAAM,WAAW,sBAAsB;IACrC,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,cAAc,EAAE,MAAM,CAAC;IACvB,cAAc,EAAE,sBAAsB,EAAE,CAAC;IACzC,OAAO,EAAE,MAAM,CAAC;CACjB;AAOD,qBAAa,cAAc;IACzB,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;;IAMtC,IAAI,IAAI,aAAa,EAAE;IA8CvB,OAAO,CAAC,KAAK;IAOb,kFAAkF;IAClF,MAAM,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,OAAO,CAAC,aAAa,CAAC,GAAG,aAAa;IAkC1E,0EAA0E;IAC1E,iBAAiB,CAAC,WAAW,EAAE,MAAM,EAAE,KAAK,EAAE,sBAAsB,EAAE,GAAG,IAAI;IAU7E,gFAAgF;IAChF,OAAO,CAAC,KAAK,EAAE,aAAa,GAAG,IAAI;IAYnC,MAAM,CAAC,WAAW,EAAE,MAAM,GAAG,IAAI;IAMjC,IAAI,IAAI,aAAa,EAAE;IAIvB,SAAS,CAAC,WAAW,EAAE,MAAM,GAAG,aAAa,GAAG,SAAS;CAI1D"}

package/dist/cli/project-detector.js

@@ -1,7 +1,8 @@
 import { createHash } from 'node:crypto';
-import { resolve, join, dirname, basename } from 'node:path';
+import { resolve, join, dirname } from 'node:path';
 import { homedir } from 'node:os';
 import { existsSync, readFileSync, writeFileSync, mkdirSync, renameSync } from 'node:fs';
+import { assignName } from '../federation/registry-name.js';
 /** Returns the global ~/.pindex directory (migrates from ~/.mcp-indexer if present). */
 export function getPindexHome() {
     const newHome = join(homedir(), '.pindex');
@@ -70,13 +71,47 @@ export class GlobalRegistry {
     read() {
         if (!existsSync(this.registryPath))
             return [];
+        let parsed;
         try {
-            const data = JSON.parse(readFileSync(this.registryPath, 'utf-8'));
-            return data.projects ?? [];
+            parsed = JSON.parse(readFileSync(this.registryPath, 'utf-8'));
         }
-        catch {
+        catch (err) {
+            process.stderr.write(`[pindex] registry: failed to parse ${this.registryPath}: ${String(err)}\n`);
             return [];
         }
+        const projects = parsed.projects ?? [];
+        // Migration: assign name to any entry that lacks one.
+        let migrated = false;
+        const usedNames = new Set(projects.map((p) => p.name).filter((n) => Boolean(n)));
+        for (const p of projects) {
+            if (!p.name) {
+                p.name = assignName(p.path, usedNames);
+                usedNames.add(p.name);
+                migrated = true;
+            }
+            // Migration: normalise old string[] federatedRepos to FederatedRegistryEntry[]
+            if (Array.isArray(p.federatedRepos)) {
+                const normalised = [];
+                for (const item of p.federatedRepos) {
+                    if (typeof item === 'string') {
+                        // Old shape: just a path. Resolve a name from the global registry,
+                        // or auto-name if the target isn't itself registered.
+                        const targetEntry = projects.find((q) => q.path === item);
+                        const name = targetEntry?.name ?? (item.split('/').pop() || 'federated');
+                        normalised.push({ path: item, name });
+                        migrated = true;
+                    }
+                    else if (item && typeof item === 'object' && 'path' in item && 'name' in item) {
+                        normalised.push(item);
+                    }
+                }
+                p.federatedRepos = normalised;
+            }
+        }
+        if (migrated) {
+            this.write(projects);
+        }
+        return projects;
     }
     write(entries) {
         const home = getPindexHome();
@@ -102,7 +137,8 @@ export class GlobalRegistry {
         let port = computeDefaultPort(hash);
         while (usedPorts.has(port))
             port++;
-        const name = basename(normalizedPath);
+        const usedNames = new Set(projects.map((e) => e.name).filter((n) => Boolean(n)));
+        const name = assignName(normalizedPath, usedNames);
         const entry = {
             path: normalizedPath,
             hash,
@@ -116,7 +152,7 @@ export class GlobalRegistry {
         this.write(projects);
         return entry;
     }
-    /** Update the federated repos list for a project. */
+    /** Update the federated repos list for a project (structured entries). */
     setFederatedRepos(projectPath, repos) {
         const hash = hashProjectPath(resolve(projectPath));
         const projects = this.read();
@@ -126,6 +162,19 @@ export class GlobalRegistry {
             this.write(projects);
         }
     }
+    /** Overwrite the registry entry matching entry.path. Inserts if not present. */
+    replace(entry) {
+        const all = this.read();
+        const idx = all.findIndex((e) => e.path === entry.path);
+        if (idx === -1) {
+            this.write([...all, entry]);
+        }
+        else {
+            const next = [...all];
+            next[idx] = entry;
+            this.write(next);
+        }
+    }
     remove(projectPath) {
         const hash = hashProjectPath(resolve(projectPath));
         const projects = this.read().filter((p) => p.hash !== hash);