pindex 1.2.3 → 1.4.0

package/README.md

@@ -516,8 +516,14 @@ These are set automatically in the generated `.mcp.json` — you rarely need to
 | `MONITORING_PORT` | assigned per-project | Port for the live dashboard + WebSocket |
 | `MONITORING_AUTO_OPEN` | `false` | Open the dashboard in the browser on startup |
 | `BASELINE_MODE` | `false` | Disable the index entirely (for A/B baseline sessions) |
-| `GENERATE_SUMMARIES` | `false` | Generate LLM summaries per symbol (stub — not yet wired) |
+| `GENERATE_SUMMARIES` | `false` | Generate LLM summaries per file and symbol (requires `SUMMARIZER_API_KEY`) |
+| `SUMMARIZER_API_KEY` | _(empty)_ | API key for the LLM summarization provider |
+| `SUMMARIZER_BASE_URL` | `https://api.openai.com/v1` | Base URL for the OpenAI-compatible chat completions API. Works with OpenAI, Ollama, LiteLLM, Anthropic proxy, etc. |
+| `SUMMARIZER_MODEL` | `gpt-4o-mini` | Model name for summarization requests |
 | `TOKEN_PRICE_PER_MILLION` | `3.00` | USD price per million tokens — used for cost estimates |
+| `PINDEX_PARSE_WORKERS` | _(empty)_ | Parse workers (0=sync, empty=auto) |
+| `PINDEX_BIND_HOST` | `127.0.0.1` | Bind host for monitoring/GUI (default loopback) |
+| `PINDEX_LSP` | `true` | opt-in LSP parsing for Python (set to `false` to force regex) |
 | `FEDERATION_REPOS` | _(empty)_ | Colon-separated absolute paths to linked repositories |
 | `DOCUMENT_PATTERNS` | `**/*.md,**/*.markdown,**/*.yaml,**/*.yml,**/*.txt` | Glob patterns for document files to index alongside code |
 | `OBSERVATION_RETENTION` | `permanent` | How long passive session observations are kept: `permanent`, `session`, or `Nd` (e.g. `30d`) |
@@ -630,6 +636,12 @@ goose session start
 
 ---
 
+### Python (LSP)
+
+PindeX ships with Pyright as an optional dependency. When installed, Pyright's LSP server produces the precise symbol tree instead of the fallback regex extractor. Set `PINDEX_LSP=false` to opt out. If Pyright is missing (for example when installed with `--no-optional`), PindeX logs a one-time warning and falls back to the regex path.
+
+---
+
 ## CLI Reference
 
 ```
@@ -763,7 +775,7 @@ tests/
 ├── helpers/              # createTestDb(), fixtures, test server
 ├── db/                   # schema, migrations, queries
 ├── indexer/              # parser, indexer, watcher
-├── tools/                # one file per MCP tool (13 total)
+├── tools/                # one file per MCP tool + validation tests
 ├── monitoring/           # estimator, token-logger, Express server
 ├── cli/                  # project-detector, setup, daemon
 └── integration/
@@ -778,7 +790,7 @@ tests/
 ```
 src/
 ├── index.ts                  # Entry point — MCP stdio server + FEDERATION_REPOS
-├── server.ts                 # Tool registration (13 tools, FederatedDb interface)
+├── server.ts                 # Tool registration (14 tools, Zod validation, FederatedDb)
 ├── types.ts                  # Shared TypeScript interfaces
 │
 ├── db/
@@ -790,7 +802,7 @@ src/
 ├── indexer/
 │   ├── index.ts              # Orchestrator — code + document file discovery
 │   ├── parser.ts             # tree-sitter AST → symbols; text → doc chunks
-│   ├── summarizer.ts         # LLM summary stub (not yet active)
+│   ├── summarizer.ts         # LLM summaries (OpenAI-compatible API, concurrency-limited)
 │   └── watcher.ts            # chokidar file watcher → auto-reindex
 │
 ├── tools/                    # One file per MCP tool
@@ -807,7 +819,8 @@ src/
 │   ├── search_docs.ts        # FTS5 across documents + context entries
 │   ├── get_doc_chunk.ts      # retrieve specific document section(s)
 │   ├── save_context.ts       # persist a fact/decision to context store
-│   └── get_session_memory.ts # query passive session observations
+│   ├── get_session_memory.ts # query passive session observations
+│   └── schemas.ts            # Zod schemas for runtime input validation
 │
 ├── memory/                   # Passive session memory (v1.1+)
 │   ├── ast-diff.ts           # AST diff engine — detects symbol changes

package/dist/db/migrations.d.ts

@@ -1,6 +1,9 @@
 import type Database from 'better-sqlite3';
 /** Returns the current schema version (0 for a fresh, unmigrated database). */
 export declare function getCurrentVersion(db: Database.Database): number;
-/** Runs all pending migrations and updates PRAGMA user_version. */
+/** Runs all pending migrations and updates PRAGMA user_version.
+ *  Each migration + its version bump runs inside a single transaction so a
+ *  crash mid-migration leaves the DB at the previous version instead of a
+ *  half-applied state. */
 export declare function runMigrations(db: Database.Database): void;
 //# sourceMappingURL=migrations.d.ts.map

package/dist/db/migrations.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../../src/db/migrations.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AA4D3C,+EAA+E;AAC/E,wBAAgB,iBAAiB,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,MAAM,CAE/D;AAED;;;0BAG0B;AAC1B,wBAAgB,aAAa,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,IAAI,CAWzD"}

package/dist/db/migrations.js

@@ -54,13 +54,19 @@ const migrations = [
 export function getCurrentVersion(db) {
     return db.pragma('user_version', { simple: true });
 }
-/** Runs all pending migrations and updates PRAGMA user_version. */
+/** Runs all pending migrations and updates PRAGMA user_version.
+ *  Each migration + its version bump runs inside a single transaction so a
+ *  crash mid-migration leaves the DB at the previous version instead of a
+ *  half-applied state. */
 export function runMigrations(db) {
     const current = getCurrentVersion(db);
     const pending = migrations.filter((m) => m.version > current);
     for (const migration of pending) {
-        migration.up(db);
-        db.pragma(`user_version = ${migration.version}`);
+        const run = db.transaction(() => {
+            migration.up(db);
+            db.pragma(`user_version = ${migration.version}`);
+        });
+        run();
     }
 }
 //# sourceMappingURL=migrations.js.map

package/dist/db/migrations.js.map

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package/dist/db/queries.d.ts.map

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package/dist/db/queries.js

@@ -1,5 +1,9 @@
-import { sep } from 'node:path';
+/** Normalize any path to forward slashes (POSIX convention). */
+function toForwardSlash(p) {
+    return p.replace(/\\/g, '/');
+}
 export function upsertFile(db, input) {
+    input = { ...input, path: toForwardSlash(input.path) };
     db.prepare(`
     INSERT INTO files (path, language, hash, raw_token_estimate, summary, last_indexed)
     VALUES (@path, @language, @hash, @rawTokenEstimate, @summary, datetime('now'))
@@ -12,16 +16,14 @@ export function upsertFile(db, input) {
   `).run(input);
 }
 export function getFileByPath(db, path) {
-    // Normalise to the platform separator so forward-slash and backslash inputs
-    // both match the paths stored by the indexer on Windows (backslash) / Unix (slash).
-    const normalized = path.replace(/[\\/]/g, sep);
+    const normalized = toForwardSlash(path);
     return (db.prepare('SELECT * FROM files WHERE path = ?').get(normalized) ?? null);
 }
 export function getAllFiles(db) {
     return db.prepare('SELECT * FROM files ORDER BY path').all();
 }
 export function deleteFile(db, path) {
-    db.prepare('DELETE FROM files WHERE path = ?').run(path);
+    db.prepare('DELETE FROM files WHERE path = ?').run(toForwardSlash(path));
 }
 export function upsertSymbol(db, input) {
     const result = db.prepare(`
@@ -74,8 +76,8 @@ export function searchSymbolsFts(db, query, limit, filters) {
         params.push(limit);
         return db.prepare(sql).all(...params);
     }
-    catch {
-        // FTS query syntax errors – return empty rather than throw
+    catch (err) {
+        process.stderr.write(`[pindex] FTS symbol search error: ${err}\n`);
         return [];
     }
 }
@@ -207,7 +209,8 @@ export function searchDocumentsFts(db, query, limit) {
          LIMIT ?`)
             .all(query, limit);
     }
-    catch {
+    catch (err) {
+        process.stderr.write(`[pindex] FTS document search error: ${err}\n`);
         return [];
     }
 }
@@ -229,7 +232,8 @@ export function searchContextEntriesFts(db, query, limit) {
          LIMIT ?`)
             .all(query, limit);
     }
-    catch {
+    catch (err) {
+        process.stderr.write(`[pindex] FTS context search error: ${err}\n`);
         return [];
     }
 }
@@ -247,10 +251,10 @@ export function upsertAstSnapshot(db, input) {
 export function getSnapshotsByFile(db, filePath) {
     return db
         .prepare('SELECT * FROM ast_snapshots WHERE file_path = ?')
-        .all(filePath);
+        .all(toForwardSlash(filePath));
 }
 export function deleteSnapshotsByFile(db, filePath) {
-    db.prepare('DELETE FROM ast_snapshots WHERE file_path = ?').run(filePath);
+    db.prepare('DELETE FROM ast_snapshots WHERE file_path = ?').run(toForwardSlash(filePath));
 }
 export function insertObservation(db, input) {
     const result = db.prepare(`
@@ -274,21 +278,21 @@ export function getObservationsBySession(db, sessionId, includeStale = true, lim
 export function getObservationsByFile(db, filePath, limit = 5) {
     return db
         .prepare('SELECT * FROM session_observations WHERE file_path = ? ORDER BY created_at DESC LIMIT ?')
-        .all(filePath, limit);
+        .all(toForwardSlash(filePath), limit);
 }
 export function getObservationsByFileSymbol(db, filePath, symbolName, limit = 5) {
     return db
         .prepare(`SELECT * FROM session_observations
        WHERE file_path = ? AND symbol_name = ?
        ORDER BY created_at DESC LIMIT ?`)
-        .all(filePath, symbolName, limit);
+        .all(toForwardSlash(filePath), symbolName, limit);
 }
 export function markObservationsStale(db, filePath, symbolName, reason) {
     db.prepare(`
     UPDATE session_observations
     SET stale = 1, stale_reason = ?
     WHERE file_path = ? AND symbol_name = ? AND stale = 0
-  `).run(reason, filePath, symbolName);
+  `).run(reason, toForwardSlash(filePath), symbolName);
 }
 export function countStaleObservations(db) {
     const row = db
@@ -347,7 +351,7 @@ export function getRecentFileChangeEvents(db, filePath, sessionId, windowMinutes
          AND event_type IN ('symbol_added', 'symbol_removed', 'sig_changed')
          AND timestamp >= ?
        ORDER BY timestamp`)
-        .all(sessionId, filePath, cutoff);
+        .all(sessionId, toForwardSlash(filePath), cutoff);
 }
 /**
  * Check if at least one session event matching the given criteria exists.
@@ -358,7 +362,7 @@ export function hasMatchingSessionEvent(db, sessionId, eventType, filePath, symb
     const params = [sessionId, eventType];
     if (filePath) {
         sql += ' AND file_path = ?';
-        params.push(filePath);
+        params.push(toForwardSlash(filePath));
     }
     if (symbolName) {
         sql += ' AND symbol_name = ?';
@@ -373,7 +377,7 @@ export function hasMatchingSessionEvent(db, sessionId, eventType, filePath, symb
 export function getLatestSessionEvent(db, sessionId, eventType, filePath) {
     return db.prepare(`SELECT * FROM session_events
      WHERE session_id = ? AND event_type = ? AND file_path = ?
-     ORDER BY timestamp DESC LIMIT 1`).get(sessionId, eventType, filePath);
+     ORDER BY timestamp DESC LIMIT 1`).get(sessionId, eventType, toForwardSlash(filePath));
 }
 export function getAntiPatternEvents(db, sessionId) {
     return db

package/dist/db/queries.js.map

@@ -1 +1 @@
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package/dist/gui/server.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/gui/server.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EAAE,YAAY,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,OAAO,MAAM,SAAS,CAAC;AAG9B,OAAO,EAGL,KAAK,aAAa,EACnB,MAAM,4BAA4B,CAAC;AAIpC,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,aAAa,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,gBAAgB,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,cAAc,EAAE,MAAM,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,OAAO,CAAC;IAClB,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,aAAa,EAAE,OAAO,CAAC;IACvB,cAAc,EAAE,MAAM,CAAC;CACxB;AAaD,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,aAAa,GAAG,IAAI,CAAC,YAAY,EAAE,eAAe,CAAC,CAsD1F;AAID,wBAAgB,YAAY,IAAI,OAAO,CAAC,WAAW,CAiKlD;AAED,MAAM,WAAW,SAAS;IACxB,UAAU,EAAE,UAAU,CAAC,OAAO,YAAY,CAAC,CAAC;IAC5C,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;CACxB;AAED,MAAM,WAAW,iBAAkB,SAAQ,SAAS;IAClD,IAAI,EAAE,MAAM,CAAC;CACd;AAED,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAuBvE"}
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/gui/server.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EAAE,YAAY,EAAE,MAAM,WAAW,CAAC;AAGzC,OAAO,OAAO,MAAM,SAAS,CAAC;AAG9B,OAAO,EAGL,KAAK,aAAa,EACnB,MAAM,4BAA4B,CAAC;AAIpC,MAAM,WAAW,YAAY;IAC3B,KAAK,EAAE,aAAa,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC;IAClB,WAAW,EAAE,MAAM,CAAC;IACpB,gBAAgB,EAAE,MAAM,CAAC;IACzB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,cAAc,EAAE,MAAM,CAAC;IACvB,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,OAAO,CAAC;IAClB,WAAW,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,aAAa,EAAE,OAAO,CAAC;IACvB,cAAc,EAAE,MAAM,CAAC;CACxB;AAaD,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,aAAa,GAAG,IAAI,CAAC,YAAY,EAAE,eAAe,CAAC,CAuD1F;AAID,wBAAgB,YAAY,IAAI,OAAO,CAAC,WAAW,CAmKlD;AAED,MAAM,WAAW,SAAS;IACxB,UAAU,EAAE,UAAU,CAAC,OAAO,YAAY,CAAC,CAAC;IAC5C,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;CACxB;AAED,MAAM,WAAW,iBAAkB,SAAQ,SAAS;IAClD,IAAI,EAAE,MAAM,CAAC;CACd;AAED,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,iBAAiB,CAAC,CA2BvE"}

package/dist/gui/server.js

@@ -59,7 +59,8 @@ export function loadProjectStats(entry) {
             indexSizeBytes,
         };
     }
-    catch {
+    catch (err) {
+        process.stderr.write(`[pindex] Failed to load stats for project "${entry.name}": ${err}\n`);
         return {
             entry, fileCount: 0, symbolCount: 0,
             totalTokensSaved: 0, totalTokensActual: 0,
@@ -110,7 +111,8 @@ export function createGuiApp() {
          FROM token_log ORDER BY timestamp DESC LIMIT 200`).all();
             return res.json({ files, symbols, tokenLog });
         }
-        catch {
+        catch (err) {
+            process.stderr.write(`[pindex] DB query failed for project detail ${req.params.hash}: ${err}\n`);
             return res.json({ files: [], symbols: [], tokenLog: [] });
         }
         finally {
@@ -133,7 +135,8 @@ export function createGuiApp() {
                 .all();
             return res.json(sessions);
         }
-        catch {
+        catch (err) {
+            process.stderr.write(`[pindex] DB query failed for sessions ${req.params.hash}: ${err}\n`);
             return res.json([]);
         }
         finally {
@@ -180,7 +183,9 @@ export function createGuiApp() {
                     .all();
                 rows.forEach(r => all.push({ ...r, projectName: entry.name, projectHash: entry.hash }));
             }
-            catch { /* skip */ }
+            catch (err) {
+                process.stderr.write(`[pindex] Failed to read sessions for "${entry.name}": ${err}\n`);
+            }
             finally {
                 db?.close();
             }
@@ -237,7 +242,11 @@ export function startGuiServer(port) {
             httpServer.close();
             reject(err);
         });
-        httpServer.listen(port);
+        // Bind to loopback by default. The GUI exposes aggregated project data
+        // across ALL registered PindeX projects and must not be reachable from
+        // other hosts without an explicit opt-in via PINDEX_BIND_HOST.
+        const bindHost = process.env.PINDEX_BIND_HOST ?? '127.0.0.1';
+        httpServer.listen(port, bindHost);
     });
 }
 // ─── Inline Dashboard HTML ─────────────────────────────────────────────────

package/dist/gui/server.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -22,6 +22,10 @@ const BASELINE_MODE = process.env.BASELINE_MODE === 'true';
 const GENERATE_SUMMARIES = process.env.GENERATE_SUMMARIES === 'true';
 // 'permanent' | 'session' | '7d' | '30d' | ...
 const OBSERVATION_RETENTION = process.env.OBSERVATION_RETENTION ?? 'permanent';
+// Summarizer configuration
+const SUMMARIZER_API_KEY = process.env.SUMMARIZER_API_KEY ?? '';
+const SUMMARIZER_BASE_URL = process.env.SUMMARIZER_BASE_URL ?? 'https://api.openai.com/v1';
+const SUMMARIZER_MODEL = process.env.SUMMARIZER_MODEL ?? 'gpt-4o-mini';
 // Federated repos: colon- or comma-separated absolute paths
 const FEDERATION_REPOS = (process.env.FEDERATION_REPOS ?? '')
     .split(/[:，,]/)
@@ -44,11 +48,20 @@ async function main() {
         }
     }).filter((x) => x !== null);
     // 2. Set up the indexer
+    if (GENERATE_SUMMARIES && !SUMMARIZER_API_KEY) {
+        process.stderr.write('[pindex] Warning: GENERATE_SUMMARIES=true but no SUMMARIZER_API_KEY set\n');
+    }
     const indexer = new Indexer({
         db,
         projectRoot: PROJECT_ROOT,
         languages: LANGUAGES,
         generateSummaries: GENERATE_SUMMARIES,
+        summarizerOptions: {
+            enabled: GENERATE_SUMMARIES,
+            apiKey: SUMMARIZER_API_KEY,
+            baseUrl: SUMMARIZER_BASE_URL,
+            model: SUMMARIZER_MODEL,
+        },
     });
     // 3. Initial indexing (non-blocking) — log errors instead of swallowing
     indexer.indexAll().then(() => indexer.resolveDependencies()).catch((err) => {
@@ -91,6 +104,7 @@ async function main() {
         try {
             if (watcher)
                 await watcher.stop();
+            await indexer.closePool();
             await monitoringServer.close();
             for (const fed of federatedDbs) {
                 try {

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/indexer/index.d.ts

@@ -1,6 +1,7 @@
 import type Database from 'better-sqlite3';
-import type { IndexResult } from '../types.js';
+import type { IndexResult, ParsedImport } from '../types.js';
 import { type AstDiffResult } from '../memory/ast-diff.js';
+import { type SummarizerOptions } from './summarizer.js';
 /** Glob patterns per language name (as used in EXTENSION_MAP). */
 export declare const LANGUAGE_PATTERNS: Record<string, string[]>;
 export interface IndexerOptions {
@@ -9,7 +10,13 @@ export interface IndexerOptions {
     languages?: string[];
     ignorePatterns?: string[];
     generateSummaries?: boolean;
+    summarizerOptions?: SummarizerOptions;
     documentPatterns?: string[];
+    /** 0 = run parsing synchronously on main (test / small-project mode).
+     *  undefined = auto-select based on CPU count. */
+    maxParseWorkers?: number;
+    /** Enable the LSP-backed Python parser. Default: process.env.PINDEX_LSP !== 'false'. */
+    lspEnabled?: boolean;
 }
 export interface IndexAllOptions {
     additionalPaths?: string[];
@@ -27,16 +34,29 @@ export declare class Indexer {
     private readonly languages;
     private readonly ignorePatterns;
     private readonly generateSummaries;
+    private readonly summarizer;
     private readonly documentPatterns;
+    private pool;
+    private readonly configuredMaxWorkers;
+    private lastImportsCache;
+    private lsp;
     constructor(options: IndexerOptions);
     /** Discovers and indexes all source files and document files in the project root. */
     indexAll(options?: IndexAllOptions): Promise<IndexResult>;
     /** Indexes (or re-indexes) a single file given its project-relative path. */
     indexFile(relativePath: string, force?: boolean): Promise<IndexFileResult>;
+    /** Everything that happens after a file has been read, parsed, and hashed.
+     *  Runs entirely on the main thread: summarizer → AST diff → DB transaction. */
+    private processParsedFile;
     /** Indexes (or re-indexes) a single document file given its project-relative path. */
     indexDocument(relativePath: string, force?: boolean): Promise<IndexFileResult>;
-    /** Second-pass: resolves import strings to file IDs and stores dependencies. */
-    resolveDependencies(): Promise<void>;
+    /** Resolves import strings to file IDs and stores dependencies.
+     *  Fast path: pass an importsCache built during indexAll() to skip re-reading
+     *  and re-parsing every file. Slow path (no cache) re-parses as before. */
+    resolveDependencies(importsCache?: Map<string, ParsedImport[]>): Promise<void>;
+    /** Terminates any worker threads owned by the parse pool. Safe to call
+     *  multiple times; no-op when no pool was ever constructed. */
+    closePool(): Promise<void>;
     /** Resolves a relative import path to a project-relative file path. */
     private resolveImportPath;
 }

package/dist/indexer/index.d.ts.map

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