pi-para 0.7.5 → 0.7.7

package/CHANGELOG.md

@@ -2,6 +2,16 @@
 
 ## Unreleased
 
+## [0.7.7] — 2026-08-23
+
+### Fixed
+- Prevented native `better-sqlite3` teardown crashes (`RemoveEnvironmentCleanupHook: Assertion failed: (env) != nullptr`) when quitting, resuming, forking, or switching sessions while interactive wiki initialization was still running. Background initialization is now lifecycle-owned: shutdown cancels later stages, awaits the in-flight initializer and deferred maintenance, prevents post-shutdown status/scheduler work, waits for active scheduler SQLite tasks to become idle, and only then closes the QMD store.
+
+## [0.7.6] — 2026-08-15
+
+### Fixed
+- Interactive sessions never wait on wiki initialization anymore. Store opens, git init, scope detection, and model-service setup intermittently stalled behind cross-process contention (locks, slow IO), freezing the TUI at "wiki: indexing..." — especially when resuming very large sessions with `pi -c`. The complete initialization now runs in the background for interactive sessions (`ctx.hasUI`); wiki tools already self-heal via `retryStoreOpen()` if queried before the store is ready. Print/RPC one-shot runs still await initialization because they may query immediately and exit.
+
 ## [0.7.5] — 2026-08-15
 
 ### Fixed

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAKH,OAAO,KAAK,EAAE,YAAY,EAAoB,MAAM,iCAAiC,CAAC;AAsBtF,YAAY,EAAE,YAAY,EAAE,QAAQ,EAAE,eAAe,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAC5F,YAAY,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AACtE,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAC5D,YAAY,EAAE,aAAa,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC7E,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAC5D,YAAY,EAAE,WAAW,EAAE,UAAU,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AAC/E,YAAY,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AACnD,YAAY,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzD,YAAY,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AA+EvD,wBAA8B,MAAM,CAAC,EAAE,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAiSpE"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAKH,OAAO,KAAK,EAAE,YAAY,EAAoB,MAAM,iCAAiC,CAAC;AAsBtF,YAAY,EAAE,YAAY,EAAE,QAAQ,EAAE,eAAe,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AAC5F,YAAY,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AACtE,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAC5D,YAAY,EAAE,aAAa,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC7E,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAC;AAC5D,YAAY,EAAE,WAAW,EAAE,UAAU,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,WAAW,CAAC;AAC/E,YAAY,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AACnD,YAAY,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzD,YAAY,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AA+EvD,wBAA8B,MAAM,CAAC,EAAE,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAiXpE"}

package/dist/index.js

@@ -70,6 +70,10 @@ export default async function piPara(pi) {
     let store = null;
     let currentScope = null;
     let startupMaintenanceTimer = null;
+    let startupMaintenancePromise = null;
+    let readyStatusTimer = null;
+    let initializationPromise = null;
+    let sessionClosing = false;
     let storeDisabled = false;
     const getScope = () => {
         if (!currentScope) {
@@ -94,15 +98,20 @@ export default async function piPara(pi) {
     // This handles cases where the db was temporarily locked or had transient errors.
     let storeRetrying = false;
     async function retryStoreOpen() {
-        if (storeRetrying)
+        if (storeRetrying || sessionClosing)
             return false;
         storeRetrying = true;
         try {
-            store = await openStore(wikiDir, {
+            const reopenedStore = await openStore(wikiDir, {
                 paraConfig: loadedConfig.userConfig ?? undefined,
                 secretsPath: loadedConfig.secretsPath ?? undefined,
                 backgroundEmbed: false,
             });
+            if (sessionClosing) {
+                await closeStore(reopenedStore);
+                return false;
+            }
+            store = reopenedStore;
             storeDisabled = false;
             markContextDirty(); // rebuild context now that store works
             return true;
@@ -145,28 +154,71 @@ export default async function piPara(pi) {
     registerCommands(pi, wikiDir, storeProxy, getScope, setScope);
     // -- session_start ---------------------------------------------------------
     pi.on("session_start", async (_event, ctx) => {
+        // Interactive sessions must NEVER wait on wiki initialization: store
+        // opens, git init, scope detection, and model-service setup have all
+        // intermittently stalled behind cross-process contention (locks, slow
+        // IO, network), blocking the whole TUI at "wiki: indexing...". Keep the
+        // work in the background, but retain its promise: session_shutdown MUST
+        // await it before Node tears down native better-sqlite3 resources.
+        // Print/RPC one-shot runs still await because they may query then exit.
+        sessionClosing = false;
+        const pending = initializeSession(ctx);
+        initializationPromise = pending;
+        void pending.finally(() => {
+            if (initializationPromise === pending)
+                initializationPromise = null;
+        }).catch(() => { });
+        if (ctx.hasUI) {
+            void pending.catch(() => {
+                if (!sessionClosing) {
+                    try {
+                        ctx.ui.setStatus("pi-para", "wiki: init failed");
+                    }
+                    catch { /* ui gone */ }
+                }
+            });
+            return;
+        }
+        await pending;
+    });
+    async function initializeSession(ctx) {
         ctx.ui.setStatus("pi-para", "wiki: loading...");
         try {
             await initWiki(wikiDir);
         }
         catch (err) {
-            ctx.ui.notify(`Wiki init failed: ${err instanceof Error ? err.message : String(err)}`, "error");
+            if (!sessionClosing) {
+                ctx.ui.notify(`Wiki init failed: ${err instanceof Error ? err.message : String(err)}`, "error");
+            }
         }
+        if (sessionClosing)
+            return;
         ctx.ui.setStatus("pi-para", "wiki: indexing...");
         storeDisabled = false;
         try {
-            store = await openStore(wikiDir, {
+            const openedStore = await openStore(wikiDir, {
                 paraConfig: loadedConfig.userConfig ?? undefined,
                 secretsPath: loadedConfig.secretsPath ?? undefined,
                 backgroundEmbed: false,
             });
+            if (sessionClosing) {
+                await closeStore(openedStore);
+                return;
+            }
+            store = openedStore;
         }
         catch (err) {
             store = null;
             storeDisabled = true;
-            ctx.ui.notify(`Wiki search disabled: ${err instanceof Error ? err.message : String(err)}`, "warning");
+            if (!sessionClosing) {
+                ctx.ui.notify(`Wiki search disabled: ${err instanceof Error ? err.message : String(err)}`, "warning");
+            }
         }
+        if (sessionClosing)
+            return;
         currentScope = await detectScope(ctx.cwd);
+        if (sessionClosing)
+            return;
         const savedState = reconstructState(ctx);
         if (savedState?.lastScope.source === "config") {
             currentScope = savedState.lastScope;
@@ -205,6 +257,8 @@ export default async function piPara(pi) {
         catch {
             // Capture handler registration is best-effort; manual capture remains available.
         }
+        if (sessionClosing)
+            return;
         const embedEnabled = loadedConfig.userConfig?.qmd.embedEnabled !== false;
         const schedulerEnabled = !printMode && schedulerConfig?.enabled !== false;
         const scheduler = schedulerEnabled
@@ -230,8 +284,10 @@ export default async function piPara(pi) {
             const startupDelayMs = Number.isFinite(envDelay) && envDelay >= 0 ? envDelay : 30_000;
             startupMaintenanceTimer = setTimeout(() => {
                 startupMaintenanceTimer = null;
-                void (async () => {
-                    if (embedEnabled && store) {
+                if (sessionClosing)
+                    return;
+                const maintenance = (async () => {
+                    if (embedEnabled && store && !sessionClosing) {
                         try {
                             scheduler.embedEnabled = true;
                             scheduler.enqueue("qmd-embed", {}, { dedupeKey: "qmd-embed", priority: 5 });
@@ -257,16 +313,28 @@ export default async function piPara(pi) {
                         // Tick failures are recorded in scheduler history.
                     }
                 })();
+                startupMaintenancePromise = maintenance;
+                void maintenance.finally(() => {
+                    if (startupMaintenancePromise === maintenance)
+                        startupMaintenancePromise = null;
+                }).catch(() => { });
             }, startupDelayMs);
             startupMaintenanceTimer.unref?.();
         }
         if (loadedConfig.userConfig?.webWiki.enabled && !printMode) {
             ctx.ui.notify("webWiki configuration is ignored because Web Wiki was removed in 0.7.", "warning");
         }
+        if (sessionClosing)
+            return;
         ctx.ui.setStatus("pi-para", "wiki: ready");
-        if (!printMode)
-            setTimeout(() => ctx.ui.setStatus("pi-para", undefined), 3000);
-    });
+        if (!printMode) {
+            readyStatusTimer = setTimeout(() => {
+                readyStatusTimer = null;
+                if (!sessionClosing)
+                    ctx.ui.setStatus("pi-para", undefined);
+            }, 3000);
+        }
+    }
     // -- session_tree ----------------------------------------------------------
     pi.on("session_tree", async (_event, ctx) => {
         const savedState = reconstructState(ctx);
@@ -296,11 +364,34 @@ export default async function piPara(pi) {
     });
     // -- session_shutdown: register session for scheduler, close store ---------
     pi.on("session_shutdown", async (_event, ctx) => {
-        // 0. Cancel any not-yet-fired deferred startup maintenance.
+        // 0. Own the complete initializer lifecycle. Returning while its native
+        // qmd/better-sqlite3 work is still in flight can destroy V8 first and
+        // crash in Statement::~Statement / RemoveEnvironmentCleanupHook.
+        sessionClosing = true;
         if (startupMaintenanceTimer) {
             clearTimeout(startupMaintenanceTimer);
             startupMaintenanceTimer = null;
         }
+        if (readyStatusTimer) {
+            clearTimeout(readyStatusTimer);
+            readyStatusTimer = null;
+        }
+        if (initializationPromise) {
+            try {
+                await initializationPromise;
+            }
+            catch {
+                // Initialization errors were already surfaced by the owning path.
+            }
+        }
+        if (startupMaintenancePromise) {
+            try {
+                await startupMaintenancePromise;
+            }
+            catch {
+                // Maintenance is best-effort, but must settle before native teardown.
+            }
+        }
         // 1. Register session as completed (scheduler catch-up processes later)
         const sessionFile = ctx.sessionManager.getSessionFile();
         if (sessionFile) {
@@ -311,8 +402,8 @@ export default async function piPara(pi) {
                 // Non-fatal — startup catch-up can also discover sessions via filesystem scan
             }
         }
-        // 2. Stop scheduler and close the store (instant)
-        stopWikiScheduler(wikiDir);
+        // 2. Stop scheduler, await any in-flight SQLite work, then close the store.
+        await stopWikiScheduler(wikiDir);
         if (store) {
             try {
                 await closeStore(store);

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/scheduler/index.d.ts

@@ -24,6 +24,7 @@ export declare class WikiScheduler {
     private running;
     private stopped;
     private closed;
+    private idleWaiters;
     private readonly intervalMs;
     private readonly enabled;
     private readonly storeProvider;
@@ -33,6 +34,9 @@ export declare class WikiScheduler {
     constructor(opts: WikiSchedulerOptions);
     start(): void;
     stop(): void;
+    /** Wait until an in-flight task releases its native SQLite resources. */
+    waitForIdle(): Promise<void>;
+    private resolveIdleWaiters;
     private closeState;
     enqueue(taskName: string, payload?: unknown, opts?: {
         priority?: number;
@@ -63,7 +67,7 @@ export declare class WikiScheduler {
 export declare function isCredentialEmbedError(message: string): boolean;
 export declare function getWikiScheduler(opts: WikiSchedulerOptions): WikiScheduler;
 export declare function startWikiScheduler(opts: WikiSchedulerOptions): WikiScheduler;
-export declare function stopWikiScheduler(wikiDir: string, dbPath?: string): void;
+export declare function stopWikiScheduler(wikiDir: string, dbPath?: string): Promise<void>;
 export declare function enqueueWikiMaintenance(wikiDir: string, store: QMDStore, markDirty: () => void, opts?: {
     delayMs?: number;
     dbPath?: string;

package/dist/scheduler/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/scheduler/index.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAM3C,OAAO,EAAE,gBAAgB,EAAE,KAAK,SAAS,EAAE,MAAM,YAAY,CAAC;AAE9D,MAAM,MAAM,oBAAoB,GAAG,CAAC,IAAI,EAAE,SAAS,EAAE,SAAS,EAAE,aAAa,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;AAEhG,MAAM,WAAW,oBAAoB;IACnC,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,aAAa,CAAC,EAAE,MAAM,QAAQ,GAAG,IAAI,CAAC;IACtC,SAAS,CAAC,EAAE,MAAM,IAAI,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,oBAAoB,CAAC,CAAC;IAChD;;;;OAIG;IACH,YAAY,CAAC,EAAE,OAAO,CAAC;CACxB;AAED,qBAAa,aAAa;IACxB,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,KAAK,EAAE,gBAAgB,CAAC;IACjC,OAAO,CAAC,KAAK,CAA+C;IAC5D,OAAO,CAAC,OAAO,CAAS;IACxB,OAAO,CAAC,OAAO,CAAS;IACxB,OAAO,CAAC,MAAM,CAAS;IACvB,OAAO,CAAC,WAAW,CAAyB;IAC5C,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAS;IACpC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAU;IAClC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAwB;IACtD,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAa;IACvC,OAAO,CAAC,QAAQ,CAAuC;IACvD,YAAY,EAAE,OAAO,CAAC;gBAEV,IAAI,EAAE,oBAAoB;IAgBtC,KAAK,IAAI,IAAI;IASb,IAAI,IAAI,IAAI;IAUZ,yEAAyE;IACnE,WAAW,IAAI,OAAO,CAAC,IAAI,CAAC;IAKlC,OAAO,CAAC,kBAAkB;IAK1B,OAAO,CAAC,UAAU;IAMlB,OAAO,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,GAAE,OAAY,EAAE,IAAI,GAAE;QAAE,QAAQ,CAAC,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAC;QAAC,WAAW,CAAC,EAAE,IAAI,CAAA;KAAO,GAAG,MAAM;IAKlI,gBAAgB,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,oBAAoB,CAAC,GAAG,IAAI;IAIhE,IAAI,IAAI,OAAO,CAAC,MAAM,CAAC;YAoBf,OAAO;YAqBP,kBAAkB;IA0BhC;;;;OAIG;IACH,OAAO,CAAC,2BAA2B;IAkBnC;;;;;OAKG;YACW,WAAW;IAqCzB,2FAA2F;IAC3F,OAAO,CAAC,YAAY;CAUrB;AAaD,+EAA+E;AAC/E,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAE/D;AAKD,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,oBAAoB,GAAG,aAAa,CAU1E;AAED,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,oBAAoB,GAAG,aAAa,CAI5E;AAED,wBAAsB,iBAAiB,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CAYvF;AAED,wBAAgB,sBAAsB,CACpC,OAAO,EAAE,MAAM,EACf,KAAK,EAAE,QAAQ,EACf,SAAS,EAAE,MAAM,IAAI,EACrB,IAAI,GAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GAC/C,MAAM,GAAG,IAAI,CA2Bf;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAC7B,OAAO,EAAE,MAAM,EACf,KAAK,EAAE,QAAQ,EACf,IAAI,GAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GAC7B,MAAM,CAUR;AAED,wBAAgB,uBAAuB,IAAI,IAAI,CAO9C"}

package/dist/scheduler/index.js

@@ -12,6 +12,7 @@ export class WikiScheduler {
     running = false;
     stopped = false;
     closed = false;
+    idleWaiters = [];
     intervalMs;
     enabled;
     storeProvider;
@@ -47,8 +48,21 @@ export class WikiScheduler {
         if (this.timer)
             clearInterval(this.timer);
         this.timer = null;
-        if (!this.running)
+        if (!this.running) {
             this.closeState();
+            this.resolveIdleWaiters();
+        }
+    }
+    /** Wait until an in-flight task releases its native SQLite resources. */
+    async waitForIdle() {
+        if (!this.running)
+            return;
+        await new Promise((resolve) => this.idleWaiters.push(resolve));
+    }
+    resolveIdleWaiters() {
+        const waiters = this.idleWaiters.splice(0);
+        for (const resolve of waiters)
+            resolve();
     }
     closeState() {
         if (this.closed)
@@ -84,6 +98,7 @@ export class WikiScheduler {
             this.running = false;
             if (this.stopped)
                 this.closeState();
+            this.resolveIdleWaiters();
         }
         return processed;
     }
@@ -253,7 +268,7 @@ export function startWikiScheduler(opts) {
     scheduler.start();
     return scheduler;
 }
-export function stopWikiScheduler(wikiDir, dbPath) {
+export async function stopWikiScheduler(wikiDir, dbPath) {
     const key = dbPath ?? getParaPaths({ wikiDir }).schedulerDbPath;
     const timer = debounceTimers.get(key);
     if (timer) {
@@ -265,6 +280,7 @@ export function stopWikiScheduler(wikiDir, dbPath) {
         return;
     scheduler.stop();
     schedulers.delete(key);
+    await scheduler.waitForIdle();
 }
 export function enqueueWikiMaintenance(wikiDir, store, markDirty, opts = {}) {
     const key = opts.dbPath ?? getParaPaths({ wikiDir }).schedulerDbPath;

package/dist/scheduler/index.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "pi-para",
-  "version": "0.7.5",
+  "version": "0.7.7",
   "description": "PARA Knowledge Base Extension for pi — persistent, LLM-curated personal wiki",
   "type": "module",
   "main": "./dist/index.js",

package/src/index.ts

@@ -129,6 +129,10 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
   let store: QMDStore | null = null;
   let currentScope: ProjectScope | null = null;
   let startupMaintenanceTimer: ReturnType<typeof setTimeout> | null = null;
+  let startupMaintenancePromise: Promise<void> | null = null;
+  let readyStatusTimer: ReturnType<typeof setTimeout> | null = null;
+  let initializationPromise: Promise<void> | null = null;
+  let sessionClosing = false;
   let storeDisabled = false;
 
 
@@ -158,14 +162,19 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
   // This handles cases where the db was temporarily locked or had transient errors.
   let storeRetrying = false;
   async function retryStoreOpen(): Promise<boolean> {
-    if (storeRetrying) return false;
+    if (storeRetrying || sessionClosing) return false;
     storeRetrying = true;
     try {
-      store = await openStore(wikiDir, {
+      const reopenedStore = await openStore(wikiDir, {
         paraConfig: loadedConfig.userConfig ?? undefined,
         secretsPath: loadedConfig.secretsPath ?? undefined,
         backgroundEmbed: false,
       });
+      if (sessionClosing) {
+        await closeStore(reopenedStore);
+        return false;
+      }
+      store = reopenedStore;
       storeDisabled = false;
       markContextDirty(); // rebuild context now that store works
       return true;
@@ -218,35 +227,73 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
   // -- session_start ---------------------------------------------------------
 
   pi.on("session_start", async (_event, ctx) => {
+    // Interactive sessions must NEVER wait on wiki initialization: store
+    // opens, git init, scope detection, and model-service setup have all
+    // intermittently stalled behind cross-process contention (locks, slow
+    // IO, network), blocking the whole TUI at "wiki: indexing...". Keep the
+    // work in the background, but retain its promise: session_shutdown MUST
+    // await it before Node tears down native better-sqlite3 resources.
+    // Print/RPC one-shot runs still await because they may query then exit.
+    sessionClosing = false;
+    const pending = initializeSession(ctx);
+    initializationPromise = pending;
+    void pending.finally(() => {
+      if (initializationPromise === pending) initializationPromise = null;
+    }).catch(() => { /* the owning path reports initialization failures */ });
+
+    if (ctx.hasUI) {
+      void pending.catch(() => {
+        if (!sessionClosing) {
+          try { ctx.ui.setStatus("pi-para", "wiki: init failed"); } catch { /* ui gone */ }
+        }
+      });
+      return;
+    }
+    await pending;
+  });
+
+  async function initializeSession(ctx: ExtensionContext): Promise<void> {
     ctx.ui.setStatus("pi-para", "wiki: loading...");
 
     try {
       await initWiki(wikiDir);
     } catch (err) {
-      ctx.ui.notify(
-        `Wiki init failed: ${err instanceof Error ? err.message : String(err)}`,
-        "error",
-      );
+      if (!sessionClosing) {
+        ctx.ui.notify(
+          `Wiki init failed: ${err instanceof Error ? err.message : String(err)}`,
+          "error",
+        );
+      }
     }
+    if (sessionClosing) return;
 
     ctx.ui.setStatus("pi-para", "wiki: indexing...");
     storeDisabled = false;
     try {
-      store = await openStore(wikiDir, {
+      const openedStore = await openStore(wikiDir, {
         paraConfig: loadedConfig.userConfig ?? undefined,
         secretsPath: loadedConfig.secretsPath ?? undefined,
         backgroundEmbed: false,
       });
+      if (sessionClosing) {
+        await closeStore(openedStore);
+        return;
+      }
+      store = openedStore;
     } catch (err) {
       store = null;
       storeDisabled = true;
-      ctx.ui.notify(
-        `Wiki search disabled: ${err instanceof Error ? err.message : String(err)}`,
-        "warning",
-      );
+      if (!sessionClosing) {
+        ctx.ui.notify(
+          `Wiki search disabled: ${err instanceof Error ? err.message : String(err)}`,
+          "warning",
+        );
+      }
     }
+    if (sessionClosing) return;
 
     currentScope = await detectScope(ctx.cwd);
+    if (sessionClosing) return;
 
     const savedState = reconstructState(ctx);
     if (savedState?.lastScope.source === "config") {
@@ -287,6 +334,7 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
     } catch {
       // Capture handler registration is best-effort; manual capture remains available.
     }
+    if (sessionClosing) return;
 
     const embedEnabled = loadedConfig.userConfig?.qmd.embedEnabled !== false;
     const schedulerEnabled = !printMode && schedulerConfig?.enabled !== false;
@@ -314,8 +362,9 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
       const startupDelayMs = Number.isFinite(envDelay) && envDelay >= 0 ? envDelay : 30_000;
       startupMaintenanceTimer = setTimeout(() => {
         startupMaintenanceTimer = null;
-        void (async () => {
-          if (embedEnabled && store) {
+        if (sessionClosing) return;
+        const maintenance = (async () => {
+          if (embedEnabled && store && !sessionClosing) {
             try {
               scheduler.embedEnabled = true;
               scheduler.enqueue("qmd-embed", {}, { dedupeKey: "qmd-embed", priority: 5 });
@@ -338,6 +387,10 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
             // Tick failures are recorded in scheduler history.
           }
         })();
+        startupMaintenancePromise = maintenance;
+        void maintenance.finally(() => {
+          if (startupMaintenancePromise === maintenance) startupMaintenancePromise = null;
+        }).catch(() => { /* maintenance is best-effort */ });
       }, startupDelayMs);
       startupMaintenanceTimer.unref?.();
     }
@@ -345,9 +398,15 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
     if (loadedConfig.userConfig?.webWiki.enabled && !printMode) {
       ctx.ui.notify("webWiki configuration is ignored because Web Wiki was removed in 0.7.", "warning");
     }
+    if (sessionClosing) return;
     ctx.ui.setStatus("pi-para", "wiki: ready");
-    if (!printMode) setTimeout(() => ctx.ui.setStatus("pi-para", undefined), 3000);
-  });
+    if (!printMode) {
+      readyStatusTimer = setTimeout(() => {
+        readyStatusTimer = null;
+        if (!sessionClosing) ctx.ui.setStatus("pi-para", undefined);
+      }, 3000);
+    }
+  }
 
   // -- session_tree ----------------------------------------------------------
 
@@ -381,11 +440,32 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
   // -- session_shutdown: register session for scheduler, close store ---------
 
   pi.on("session_shutdown", async (_event, ctx) => {
-    // 0. Cancel any not-yet-fired deferred startup maintenance.
+    // 0. Own the complete initializer lifecycle. Returning while its native
+    // qmd/better-sqlite3 work is still in flight can destroy V8 first and
+    // crash in Statement::~Statement / RemoveEnvironmentCleanupHook.
+    sessionClosing = true;
     if (startupMaintenanceTimer) {
       clearTimeout(startupMaintenanceTimer);
       startupMaintenanceTimer = null;
     }
+    if (readyStatusTimer) {
+      clearTimeout(readyStatusTimer);
+      readyStatusTimer = null;
+    }
+    if (initializationPromise) {
+      try {
+        await initializationPromise;
+      } catch {
+        // Initialization errors were already surfaced by the owning path.
+      }
+    }
+    if (startupMaintenancePromise) {
+      try {
+        await startupMaintenancePromise;
+      } catch {
+        // Maintenance is best-effort, but must settle before native teardown.
+      }
+    }
 
     // 1. Register session as completed (scheduler catch-up processes later)
     const sessionFile = ctx.sessionManager.getSessionFile();
@@ -397,8 +477,8 @@ export default async function piPara(pi: ExtensionAPI): Promise<void> {
       }
     }
 
-    // 2. Stop scheduler and close the store (instant)
-    stopWikiScheduler(wikiDir);
+    // 2. Stop scheduler, await any in-flight SQLite work, then close the store.
+    await stopWikiScheduler(wikiDir);
 
     if (store) {
       try {

package/src/scheduler/index.ts

@@ -32,6 +32,7 @@ export class WikiScheduler {
   private running = false;
   private stopped = false;
   private closed = false;
+  private idleWaiters: Array<() => void> = [];
   private readonly intervalMs: number;
   private readonly enabled: boolean;
   private readonly storeProvider: () => QMDStore | null;
@@ -68,7 +69,21 @@ export class WikiScheduler {
     this.stopped = true;
     if (this.timer) clearInterval(this.timer);
     this.timer = null;
-    if (!this.running) this.closeState();
+    if (!this.running) {
+      this.closeState();
+      this.resolveIdleWaiters();
+    }
+  }
+
+  /** Wait until an in-flight task releases its native SQLite resources. */
+  async waitForIdle(): Promise<void> {
+    if (!this.running) return;
+    await new Promise<void>((resolve) => this.idleWaiters.push(resolve));
+  }
+
+  private resolveIdleWaiters(): void {
+    const waiters = this.idleWaiters.splice(0);
+    for (const resolve of waiters) resolve();
   }
 
   private closeState(): void {
@@ -101,6 +116,7 @@ export class WikiScheduler {
     } finally {
       this.running = false;
       if (this.stopped) this.closeState();
+      this.resolveIdleWaiters();
     }
     return processed;
   }
@@ -268,7 +284,7 @@ export function startWikiScheduler(opts: WikiSchedulerOptions): WikiScheduler {
   return scheduler;
 }
 
-export function stopWikiScheduler(wikiDir: string, dbPath?: string): void {
+export async function stopWikiScheduler(wikiDir: string, dbPath?: string): Promise<void> {
   const key = dbPath ?? getParaPaths({ wikiDir }).schedulerDbPath;
   const timer = debounceTimers.get(key);
   if (timer) {
@@ -279,6 +295,7 @@ export function stopWikiScheduler(wikiDir: string, dbPath?: string): void {
   if (!scheduler) return;
   scheduler.stop();
   schedulers.delete(key);
+  await scheduler.waitForIdle();
 }
 
 export function enqueueWikiMaintenance(