pi-maestro-flow 0.2.0

package/skills/scholar-rebuttal-pro/SKILL.md

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+---
+name: scholar-rebuttal-pro
+description: "Enhanced academic paper review response workflow with Agy/CLI collaborative analysis and multi-perspective discussion. Produces structured rebuttal documents with evidence-based strategies. Triggers on \"rebuttal\", \"respond to reviewers\", \"review response\", \"审稿回复\"."
+allowed-tools: Task AskUserQuestion TodoWrite Read Write Edit Bash Glob Grep Skill mcp__ace-tool__search_context mcp__ccw-tools__read_file mcp__ccw-tools__edit_file
+---
+
+# Scholar Rebuttal Pro
+
+Enhanced academic paper review response workflow combining Agy/CLI collaborative analysis with multi-perspective discussion. Produces structured, evidence-based rebuttal documents optimized for conference-specific requirements.
+
+## Pre-load (before execution)
+
+1. **Codebase docs**: If `.workflow/codebase/ARCHITECTURE.md` exists, read for project context
+2. **Specs**: `maestro load --type spec --category coding` — load coding conventions
+3. **Wiki knowledge**: `maestro search "academic writing research paper" --json` — top 5 entries as prior context
+4. All optional — proceed without if unavailable
+
+## Architecture Overview
+
+```
+┌─────────────────────────────────────────────────────────────────┐
+│  Scholar Rebuttal Pro Orchestrator (SKILL.md)                    │
+│  → Pure coordinator: Execute phases, parse outputs, pass context  │
+│  → Optional: --session <session-id> for WFS session integration   │
+└───────────────────────┬─────────────────────────────────────────┘
+                        │
+    ┌─────────┐ ┌─────────┐ ┌─────────┐ ┌─────────┐ ┌─────────┐ ┌─────────┐
+    │ Phase 1 │ │ Phase 2 │ │ Phase 3 │ │ Phase 4 │ │ Phase 5 │ │ Step 6  │
+    │ Review  │ │ Multi-  │ │Strategy │ │Rebuttal │ │ Quality │ │Session  │
+    │ Parsing │ │Perspect │ │Formula  │ │ Writing │ │Validat  │ │Finalize │
+    └─────────┘ └─────────┘ └─────────┘ └─────────┘ └─────────┘ └─────────┘
+      reviewA    discussion   strategy    rebuttal    quality     git commit
+      nalysis    Consensus    Matrix      Draft       Score      + register
+```
+
+## Key Design Principles
+
+1. **CLI-Assisted Analysis**: Leverage Agy CLI for semantic analysis, evidence gathering, and quality validation
+2. **Multi-Perspective Discussion**: Simulate author/reviewer/expert viewpoints to develop robust strategies
+3. **Evidence-Based Responses**: Link every response to paper content or experimental evidence
+4. **Conference-Agnostic Templates**: Support extensible template system for different venues
+5. **Progressive Disclosure**: Load phase documents on-demand to manage context window
+
+## Interactive Preference Collection
+
+Collect workflow preferences via AskUserQuestion before dispatching to phases:
+
+```javascript
+const prefResponse = AskUserQuestion({
+  questions: [
+    {
+      question: "是否跳过所有确认步骤（自动模式）？",
+      header: "Auto Mode",
+      multiSelect: false,
+      options: [
+        { label: "Interactive (Recommended)", description: "交互模式，每阶段后确认" },
+        { label: "Auto", description: "跳过所有确认，自动执行" }
+      ]
+    },
+    {
+      question: "论文内容来源？（用于策略制定时查找支撑证据）",
+      header: "Paper Source",
+      multiSelect: false,
+      options: [
+        { label: "Provide Path", description: "指定论文 PDF/LaTeX 路径" },
+        { label: "Current Directory", description: "自动搜索当前目录" },
+        { label: "Review Only", description: "仅基于审稿意见回复" }
+      ]
+    },
+    {
+      question: "目标会议类型？（影响模板和策略选择）",
+      header: "Conference",
+      multiSelect: false,
+      options: [
+        { label: "ML Conferences", description: "NeurIPS/ICML/ICLR" },
+        { label: "CV Conferences", description: "CVPR/ECCV/ICCV" },
+        { label: "NLP Conferences", description: "ACL/EMNLP" },
+        { label: "Generic", description: "通用模板" }
+      ]
+    }
+  ]
+})
+
+// Derive workflowPreferences from user selection
+workflowPreferences = {
+  autoYes: prefResponse["Auto Mode"] === "Auto",
+  paperSource: prefResponse["Paper Source"],
+  conferenceType: prefResponse["Conference"]
+}
+```
+
+**workflowPreferences** is passed to phase execution as context variable.
+Phases reference as `workflowPreferences.autoYes`, `workflowPreferences.paperSource`, etc.
+
+## Auto Mode Defaults
+
+When `workflowPreferences.autoYes === true`:
+- Skip confirmation after each phase
+- Use recommended strategies from multi-perspective discussion
+- Apply default conference template (Generic)
+- Auto-proceed to quality validation
+
+## Execution Flow
+
+> **⚠️ COMPACT DIRECTIVE**: Context compression MUST check TodoWrite phase status.
+> The phase currently marked `in_progress` is the active execution phase — preserve its FULL content.
+> Only compress phases marked `completed` or `pending`.
+
+```
+Input Parsing:
+   └─ Convert user input to structured format (reviewCommentsPath + paperPath + conferenceType)
+   └─ Parse --session flag → resolve output_base (session: {sessionDir}/rebuttal/ | default: .)
+
+Phase 1: Review Parsing & Classification
+   └─ Ref: phases/01-review-parsing.md
+      ├─ Tasks attached: Parse reviewer comments structure → Classify comments using Agy CLI → Extract sentiment and key concerns → Generate review-analysis.json
+      └─ Output: reviewAnalysis, commentCategories, ${output_base}/review-analysis.json, ${output_base}/comment-classification.md
+
+Phase 2: Multi-Perspective Discussion
+   └─ Ref: phases/02-multi-perspective-discussion.md
+      ├─ Tasks attached: Author perspective: effective response strategies → Reviewer perspective: persuasive arguments → Expert perspective: technical accuracy and academic norms → Synthesize consensus strategies
+      └─ Output: discussionConsensus, strategicRecommendations, ${output_base}/discussion-log.md, ${output_base}/consensus-strategies.json
+
+Phase 3: Strategy Formulation
+   └─ Ref: phases/03-strategy-formulation.md
+      ├─ Tasks attached: Map comments to response strategies → Search paper content for evidence using CLI → Identify gaps requiring new experiments → Generate strategy matrix
+      └─ Output: strategyMatrix, evidenceMap, ${output_base}/strategy-matrix.md, ${output_base}/evidence-references.json
+
+Phase 4: Rebuttal Writing
+   └─ Ref: phases/04-rebuttal-writing.md
+      ├─ Tasks attached: Apply conference-specific template → Write point-by-point responses → Integrate evidence and citations → Optimize professional tone
+      └─ Output: rebuttalDraft, rebuttal.md, ${output_base}/rebuttal-draft-v1.md
+
+Phase 5: Quality Validation
+   └─ Ref: phases/05-quality-validation.md
+      ├─ Tasks attached: Check completeness (all comments addressed) → Assess professionalism and tone → Evaluate persuasiveness and evidence strength → Generate improvement recommendations
+      └─ Output: qualityScore, improvements, ${output_base}/quality-report.md, ${output_base}/improvement-suggestions.json
+
+Step 6: Session Finalization (only when --session provided)
+   └─ Git commit artifacts → Register in context/index.json
+      ├─ Tasks: git add rebuttal/ → git commit → register artifacts in index.json
+      └─ Output: commit hash, updated index.json
+
+Return:
+   └─ Summary with recommended next steps
+```
+
+**Phase Reference Documents** (read on-demand when phase executes):
+
+| Phase | Document | Purpose | Compact |
+|-------|----------|---------|---------|
+| 1 | [phases/01-review-parsing.md](phases/01-review-parsing.md) | Parse reviewer comments, classify by type (Major/Minor/Typo/Misunderstanding), extract key concerns using Agy CLI semantic analysis | TodoWrite 驱动 |
+| 2 | [phases/02-multi-perspective-discussion.md](phases/02-multi-perspective-discussion.md) | Simulate discussion from author, reviewer, and domain expert perspectives to develop consensus strategies | TodoWrite 驱动 + 🔄 sentinel |
+| 3 | [phases/03-strategy-formulation.md](phases/03-strategy-formulation.md) | Select response strategies (Accept/Defend/Clarify/Experiment) based on discussion, analyze paper content for supporting evidence using CLI | TodoWrite 驱动 + 🔄 sentinel |
+| 4 | [phases/04-rebuttal-writing.md](phases/04-rebuttal-writing.md) | Generate structured rebuttal document using rebuttal-writer agent, apply conference-specific templates, optimize tone | TodoWrite 驱动 + 🔄 sentinel |
+| 5 | [phases/05-quality-validation.md](phases/05-quality-validation.md) | Validate rebuttal quality using Agy CLI: completeness, professionalism, persuasiveness, generate improvement suggestions | TodoWrite 驱动 |
+
+**Compact Rules**:
+1. **TodoWrite `in_progress`** → 保留完整内容，禁止压缩
+2. **TodoWrite `completed`** → 可压缩为摘要
+3. **🔄 sentinel fallback** → 带此标记的 phase 包含 compact sentinel；若 compact 后仅存 sentinel 而无完整 Step 协议，必须立即 `Read()` 恢复
+
+## Core Rules
+
+1. **Start Immediately**: First action is TodoWrite initialization, second action is Phase 1 execution
+2. **No Preliminary Analysis**: Do not read files or gather context before Phase 1
+3. **Parse Every Output**: Extract required data from each phase for next phase
+4. **Auto-Continue**: Check TodoList status to execute next pending phase automatically
+5. **Track Progress**: Update TodoWrite dynamically with task attachment/collapse pattern
+6. **Progressive Phase Loading**: Read phase docs ONLY when that phase is about to execute
+7. **DO NOT STOP**: Continuous multi-phase workflow until all phases complete
+8. **CLI Integration**: Use `ccw cli --tool agy --mode analysis` for semantic analysis tasks
+9. **Evidence Linking**: Every response strategy must link to paper content or experimental evidence
+
+## Input Processing
+
+User provides review comments in one of these formats:
+
+1. **File path**: `reviews.txt`, `reviewer-comments.md`, `reviews.pdf`
+2. **Inline text**: Paste reviewer comments directly
+3. **Structured JSON**: Pre-parsed review structure
+
+**Optional flag**: `--session <session-id>` to integrate with WFS session.
+
+### Session Resolution
+
+```javascript
+// Parse --session flag from $ARGUMENTS
+const sessionMatch = $ARGUMENTS.match(/--session\s+(\S+)/);
+
+if (sessionMatch) {
+  const sessionId = sessionMatch[1];
+  // Resolve session directory (follows paper:assemble pattern)
+  const sessionDir = `.workflow/${sessionId}`;
+
+  // Validate session exists
+  if (!fs.existsSync(`${sessionDir}/session.json`)) {
+    error(`Session not found: ${sessionDir}. Run /session:start first.`);
+  }
+
+  // Create rebuttal subdirectory if it doesn't exist
+  // mkdir -p ${sessionDir}/rebuttal/
+  const output_base = `${sessionDir}/rebuttal`;
+
+  // Remove --session flag from arguments before further parsing
+  const cleanArgs = $ARGUMENTS.replace(/--session\s+\S+/, '').trim();
+} else {
+  // No session: use current working directory (backward-compatible default)
+  const output_base = '.';
+  const sessionDir = null;
+  const cleanArgs = $ARGUMENTS;
+}
+```
+
+### Structured Input
+
+Convert to structured format:
+
+```javascript
+const structuredInput = {
+  reviewCommentsPath: <path or inline text>,
+  paperPath: workflowPreferences.paperSource === "Provide Path" ? <user-provided> : <auto-discovered>,
+  conferenceType: workflowPreferences.conferenceType,
+  autoMode: workflowPreferences.autoYes,
+  sessionId: sessionMatch ? sessionMatch[1] : null,
+  sessionDir: sessionDir,
+  output_base: output_base  // All phase outputs use this base path
+}
+```
+
+## Data Flow
+
+```
+User Input (review comments + paper path + conference type [+ --session <session-id>])
+    |
+[Session Resolution]
+    | sessionDir = --session provided ? .workflow/{session-id}/ : null
+    | output_base = sessionDir ? {sessionDir}/rebuttal/ : .
+    | mkdir -p ${output_base}
+    |
+[Convert to Structured Format]
+    |
+Phase 1: Review Parsing & Classification
+    | Input: reviewCommentsPath + conferenceType
+    | Output: reviewAnalysis + commentCategories
+    | Files: ${output_base}/review-analysis.json, ${output_base}/comment-classification.md
+    |
+Phase 2: Multi-Perspective Discussion
+    | Input: reviewAnalysis + commentCategories
+    | Output: discussionConsensus + strategicRecommendations
+    | Files: ${output_base}/discussion-log.md, ${output_base}/consensus-strategies.json
+    |
+Phase 3: Strategy Formulation
+    | Input: discussionConsensus + strategicRecommendations + paperPath
+    | Output: strategyMatrix + evidenceMap
+    | Files: ${output_base}/strategy-matrix.md, ${output_base}/evidence-references.json
+    |
+Phase 4: Rebuttal Writing
+    | Input: strategyMatrix + evidenceMap + conferenceType
+    | Output: rebuttalDraft
+    | Files: ${output_base}/rebuttal-draft-v1.md
+    |
+Phase 5: Quality Validation
+    | Input: rebuttalDraft
+    | Output: qualityScore + improvements
+    | Files: ${output_base}/quality-report.md, ${output_base}/improvement-suggestions.json
+    |
+Step 6: Session Finalization (only when --session provided)
+    | Git commit all artifacts in session repo
+    | Register artifacts in {sessionDir}/context/index.json
+    |
+Return summary to user
+```
+
+## TodoWrite Pattern
+
+**Core Concept**: Dynamic task attachment and collapse for real-time visibility.
+
+### Key Principles
+
+1. **Task Attachment** (when phase executed):
+   - Sub-tasks are **attached** to orchestrator's TodoWrite
+   - **Phase 1, 2, 3, 4, 5**: Multiple sub-tasks attached
+
+2. **Task Collapse** (after sub-tasks complete):
+   - **Applies to Phase 1, 2, 3, 4, 5**: Remove sub-tasks, collapse to summary
+   - Maintains clean orchestrator-level view
+
+3. **Continuous Execution**: After completion, automatically proceed to next phase
+
+### Phase 1 (Tasks Attached):
+```json
+[
+  {"content": "Phase 1: Review Parsing & Classification", "status": "in_progress"},
+  {"content": "  → Parse reviewer comments structure", "status": "in_progress"},
+  {"content": "  → Classify comments using Agy CLI", "status": "pending"},
+  {"content": "  → Extract sentiment and key concerns", "status": "pending"},
+  {"content": "  → Generate review-analysis.json", "status": "pending"},
+  {"content": "Phase 2: Multi-Perspective Discussion", "status": "pending"},
+  {"content": "Phase 3: Strategy Formulation", "status": "pending"},
+  {"content": "Phase 4: Rebuttal Writing", "status": "pending"},
+  {"content": "Phase 5: Quality Validation", "status": "pending"},
+  {"content": "Step 6: Session Finalization (if --session)", "status": "pending"}
+]
+```
+
+### Phase 1 (Collapsed):
+```json
+[
+  {"content": "Phase 1: Review Parsing & Classification", "status": "completed"},
+  {"content": "Phase 2: Multi-Perspective Discussion", "status": "pending"},
+  {"content": "Phase 3: Strategy Formulation", "status": "pending"},
+  {"content": "Phase 4: Rebuttal Writing", "status": "pending"},
+  {"content": "Phase 5: Quality Validation", "status": "pending"},
+  {"content": "Step 6: Session Finalization (if --session)", "status": "pending"}
+]
+```
+
+## Post-Phase Updates
+
+After each phase completes:
+
+1. **Phase 1 → Phase 2**: Pass `reviewAnalysis` and `commentCategories` to discussion phase
+2. **Phase 2 → Phase 3**: Pass `discussionConsensus` and `strategicRecommendations` to strategy formulation
+3. **Phase 3 → Phase 4**: Pass `strategyMatrix` and `evidenceMap` to rebuttal writing
+4. **Phase 4 → Phase 5**: Pass `rebuttalDraft` to quality validation
+5. **Phase 5 → Return**: Present quality report and improvement suggestions to user
+
+## Error Handling
+
+- **Parsing Failure**: If output parsing fails, retry once, then report error
+- **Validation Failure**: Report which file/data is missing
+- **Command Failure**: Keep phase `in_progress`, report error, do not proceed
+- **CLI Failure**: If Agy CLI fails, fall back to direct analysis or report error
+- **Paper Not Found**: If paper path invalid, proceed with review-only mode
+
+## Coordinator Checklist
+
+**Before Phase 1**:
+- [ ] TodoWrite initialized with all 5 phases
+- [ ] User preferences collected (autoMode, paperSource, conferenceType)
+- [ ] Review comments path validated
+- [ ] Paper path validated (if provided)
+
+**Between Phases**:
+- [ ] Previous phase marked `completed`
+- [ ] Current phase marked `in_progress`
+- [ ] Output variables extracted and passed to next phase
+- [ ] Sub-tasks collapsed to summary
+
+**After Phase 5**:
+- [ ] All phases marked `completed`
+- [ ] Quality report generated
+- [ ] Improvement suggestions presented
+- [ ] Final rebuttal.md file written
+
+**Step 6 - Session Finalization** (only when `--session` was provided):
+- [ ] All artifacts committed to git within session repo
+- [ ] Artifacts registered in `{sessionDir}/context/index.json` with type `notes` and tag `rebuttal`
+- [ ] Session `session.json` updated with rebuttal progress
+
+## Step 6: Session Finalization
+
+> **Condition**: Only executes when `--session <session-id>` was provided. Skip entirely otherwise.
+
+After Phase 5 completes, finalize the session integration:
+
+### 6.1 Git Commit Artifacts
+
+```bash
+# Commit all rebuttal artifacts within the session
+cd "${sessionDir}"
+git add rebuttal/
+git commit -m "feat(rebuttal): add rebuttal artifacts (review analysis, strategy, draft, quality report)"
+```
+
+### 6.2 Register Artifacts in Context Index
+
+Register key rebuttal artifacts in `{sessionDir}/context/index.json` so other session commands can discover them.
+
+```javascript
+// Read existing index
+const indexPath = `${sessionDir}/context/index.json`;
+const index = JSON.parse(Read(indexPath));
+
+// Artifacts to register
+const rebuttalArtifacts = [
+  {
+    id: `rebuttal_analysis_${Date.now()}`,
+    type: "notes",
+    description: "Review analysis and comment classification",
+    path: "rebuttal/review-analysis.json",
+    tags: ["rebuttal", "review-analysis"],
+    added_at: new Date().toISOString()
+  },
+  {
+    id: `rebuttal_strategy_${Date.now()}`,
+    type: "notes",
+    description: "Response strategy matrix with evidence mapping",
+    path: "rebuttal/strategy-matrix.md",
+    tags: ["rebuttal", "strategy"],
+    added_at: new Date().toISOString()
+  },
+  {
+    id: `rebuttal_draft_${Date.now()}`,
+    type: "notes",
+    description: "Rebuttal draft document",
+    path: "rebuttal/rebuttal-draft-v1.md",
+    tags: ["rebuttal", "draft"],
+    added_at: new Date().toISOString()
+  },
+  {
+    id: `rebuttal_quality_${Date.now()}`,
+    type: "notes",
+    description: "Rebuttal quality validation report",
+    path: "rebuttal/quality-report.md",
+    tags: ["rebuttal", "quality"],
+    added_at: new Date().toISOString()
+  }
+];
+
+// Append to materials array and update statistics
+index.materials.push(...rebuttalArtifacts);
+index.statistics.total_materials = index.materials.length;
+index.updated_at = new Date().toISOString();
+
+// Update tag_index
+for (const artifact of rebuttalArtifacts) {
+  for (const tag of artifact.tags) {
+    if (!index.tag_index[tag]) index.tag_index[tag] = [];
+    index.tag_index[tag].push(artifact.id);
+  }
+}
+
+Write(indexPath, JSON.stringify(index, null, 2));
+```
+
+### 6.3 Update Session Status
+
+```bash
+jq --arg ts "$(date -u +%Y-%m-%dT%H:%M:%SZ)" '
+  .progress.rebuttal = {
+    "status": "completed",
+    "artifacts_path": "rebuttal/",
+    "completed_at": $ts
+  }
+' "${sessionDir}/session.json" > temp.json
+mv temp.json "${sessionDir}/session.json"
+
+# Final commit with session metadata update
+cd "${sessionDir}"
+git add context/index.json session.json
+git commit -m "chore(rebuttal): register artifacts in session index"
+```
+
+## Related Commands
+
+**Prerequisites**:
+- `/research-init` - Initialize research project structure
+- `/zotero-review` - Import and review literature
+
+**Follow-ups**:
+- `/commit` - Commit rebuttal document to version control
+- `/presentation` - Prepare conference presentation after acceptance
+- `/poster` - Generate academic poster
+
+## CLI Integration Details
+
+This skill uses `ccw cli` for enhanced analysis:
+
+**Phase 1 - Review Parsing**:
+```bash
+ccw cli -p "PURPOSE: Parse and classify reviewer comments by type (Major/Minor/Typo/Misunderstanding)
+TASK: • Extract comment structure • Classify by severity • Identify sentiment
+MODE: analysis
+CONTEXT: @<review-file>
+EXPECTED: JSON with classification results" --tool agy --mode analysis
+```
+
+**Phase 2 - Multi-Perspective Discussion**:
+Uses `team-ultra-analyze` skill or custom discussion agent to simulate multiple perspectives.
+
+**Phase 3 - Strategy Formulation**:
+```bash
+ccw cli -p "PURPOSE: Search paper content for evidence supporting response strategies
+TASK: • Locate relevant sections • Extract supporting data • Identify evidence gaps
+MODE: analysis
+CONTEXT: @<paper-file>
+EXPECTED: Evidence map with file:line references" --tool agy --mode analysis
+```
+
+**Phase 5 - Quality Validation**:
+```bash
+ccw cli -p "PURPOSE: Validate rebuttal quality (completeness, professionalism, persuasiveness)
+TASK: • Check all comments addressed • Assess tone • Evaluate evidence strength
+MODE: analysis
+CONTEXT: @<rebuttal-file>
+EXPECTED: Quality report with improvement suggestions" --tool agy --mode analysis
+```
+
+## Conference Template System
+
+Templates are loaded from:
+- **Built-in**: `G:\github_lib\claude-scholar\skills\review-response\references\`
+- **Custom**: `d:\ccws\.workflow\参考文档1\` (user-provided)
+
+Template selection based on `workflowPreferences.conferenceType`:
+- **ML Conferences**: NeurIPS/ICML/ICLR strategies (novelty, theory, experiments)
+- **CV Conferences**: CVPR/ECCV/ICCV strategies (visual results, one-page limit)
+- **NLP Conferences**: ACL/EMNLP strategies (linguistic appropriateness, ethics)
+- **Generic**: Universal template for all venues