pi-harness-runtime 1.1.330 → 1.1.331

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (113) hide show
  1. package/harness/wiki-integration.ts +216 -25
  2. package/package.json +1 -1
  3. package/packages/a2a-adapter/package.json +1 -1
  4. package/packages/agent-policy/package.json +1 -1
  5. package/packages/architecture-generator/package.json +1 -1
  6. package/packages/auth/package.json +1 -1
  7. package/packages/autonomous-refactor/package.json +1 -1
  8. package/packages/autonomous-runtime/package.json +1 -1
  9. package/packages/cache-strategy/package.json +1 -1
  10. package/packages/capability-registry/package.json +1 -1
  11. package/packages/checkpoint/package.json +1 -1
  12. package/packages/cli-plugin-sdk/package.json +1 -1
  13. package/packages/clipboard/package.json +1 -1
  14. package/packages/clipboard-plugin/package.json +1 -1
  15. package/packages/code-generation/package.json +1 -1
  16. package/packages/code-review/package.json +1 -1
  17. package/packages/codex-adapter/package.json +1 -1
  18. package/packages/codex-watcher/package.json +1 -1
  19. package/packages/config-capture/package.json +1 -1
  20. package/packages/context-compiler/package.json +1 -1
  21. package/packages/context-discovery/package.json +1 -1
  22. package/packages/context-manager/package.json +1 -1
  23. package/packages/cookie-sanitizer/package.json +1 -1
  24. package/packages/cost-optimizer/package.json +1 -1
  25. package/packages/dependency-analyzer/package.json +1 -1
  26. package/packages/django-plugin/package.json +1 -1
  27. package/packages/doc-generator/package.json +1 -1
  28. package/packages/durable-review/package.json +1 -1
  29. package/packages/e2e-tester/package.json +1 -1
  30. package/packages/evaluation-engine/package.json +1 -1
  31. package/packages/evaluation-runner/package.json +1 -1
  32. package/packages/event-bus/package.json +1 -1
  33. package/packages/event-store/package.json +1 -1
  34. package/packages/experience-replay/package.json +1 -1
  35. package/packages/feedback-collector/package.json +1 -1
  36. package/packages/file-copy-helper/package.json +1 -1
  37. package/packages/framework-detector/package.json +1 -1
  38. package/packages/framework-plugin-sdk/package.json +1 -1
  39. package/packages/frappe-plugin/package.json +1 -1
  40. package/packages/generic-web-plugin/package.json +1 -1
  41. package/packages/health-monitor/package.json +1 -1
  42. package/packages/intent-analyzer/package.json +1 -1
  43. package/packages/jev-judge/package.json +1 -1
  44. package/packages/knowledge-graph/package.json +1 -1
  45. package/packages/knowledge-retrieval/package.json +1 -1
  46. package/packages/laravel-plugin/package.json +1 -1
  47. package/packages/learning-engine/package.json +1 -1
  48. package/packages/mcp-adapter/package.json +1 -1
  49. package/packages/memory-engine/package.json +1 -1
  50. package/packages/milestone-manager/package.json +1 -1
  51. package/packages/model-registry/package.json +1 -1
  52. package/packages/nextjs-plugin/package.json +1 -1
  53. package/packages/notification/package.json +1 -1
  54. package/packages/observability/package.json +1 -1
  55. package/packages/okf-indexer/package.json +1 -1
  56. package/packages/paperclip-integration/package.json +1 -1
  57. package/packages/performance-optimizer/package.json +1 -1
  58. package/packages/privilege-broker/package.json +1 -1
  59. package/packages/project-analyzer/package.json +1 -1
  60. package/packages/project-bootstrap/package.json +1 -1
  61. package/packages/projection-engine/package.json +1 -1
  62. package/packages/prompt-compiler/package.json +1 -1
  63. package/packages/prompt-versioning/package.json +1 -1
  64. package/packages/provider-adapter-sdk/package.json +1 -1
  65. package/packages/provider-router/package.json +1 -1
  66. package/packages/provider-selector/package.json +1 -1
  67. package/packages/providers/package.json +1 -1
  68. package/packages/qdrant-skills/package.json +1 -1
  69. package/packages/quota-manager/package.json +1 -1
  70. package/packages/rate-limiter/package.json +1 -1
  71. package/packages/react-vite-plugin/package.json +1 -1
  72. package/packages/release-manager/package.json +1 -1
  73. package/packages/requirement-compiler/package.json +1 -1
  74. package/packages/runtime/package.json +1 -1
  75. package/packages/scheduler/package.json +1 -1
  76. package/packages/scheduler-adapter/package.json +1 -1
  77. package/packages/session/package.json +1 -1
  78. package/packages/session-api/package.json +1 -1
  79. package/packages/session-export/package.json +1 -1
  80. package/packages/shared-context/package.json +1 -1
  81. package/packages/skill-mcp-client/package.json +1 -1
  82. package/packages/skill-registry/package.json +1 -1
  83. package/packages/skills/package.json +1 -1
  84. package/packages/sprint-planner/package.json +1 -1
  85. package/packages/subscription-engine/package.json +1 -1
  86. package/packages/task-compiler/package.json +1 -1
  87. package/packages/telegram/package.json +1 -1
  88. package/packages/tencentdb-memory/package.json +1 -1
  89. package/packages/tencentdb-sync/package.json +1 -1
  90. package/packages/test-data-generator/package.json +1 -1
  91. package/packages/test-generator/package.json +1 -1
  92. package/packages/todo-bd-sync/package.json +1 -1
  93. package/packages/token-estimation/package.json +1 -1
  94. package/packages/token-optimizer/package.json +1 -1
  95. package/packages/trajectory/package.json +1 -1
  96. package/packages/tui/package.json +1 -1
  97. package/packages/types/package.json +1 -1
  98. package/packages/webmcp-tester/package.json +1 -1
  99. package/packages/wiki/dist/index.d.ts +14 -0
  100. package/packages/wiki/dist/index.d.ts.map +1 -1
  101. package/packages/wiki/dist/index.js +55 -0
  102. package/packages/wiki/dist/index.js.map +1 -1
  103. package/packages/wiki/dist/storage.d.ts +5 -1
  104. package/packages/wiki/dist/storage.d.ts.map +1 -1
  105. package/packages/wiki/dist/storage.js +50 -15
  106. package/packages/wiki/dist/storage.js.map +1 -1
  107. package/packages/wiki/package.json +1 -1
  108. package/packages/wiki/src/index.ts +68 -0
  109. package/packages/wiki/src/storage.ts +49 -16
  110. package/packages/workflow-events/package.json +1 -1
  111. package/packages/workspace-scanner/package.json +1 -1
  112. package/packages/worktree/package.json +1 -1
  113. package/packages/write-review/package.json +1 -1
package/packages/wiki/dist/index.js CHANGED
@@ -121,6 +121,61 @@ export class WikiManager {
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  throw err;
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  }
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  }
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+ /**
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+ * Ingest a source and create a wiki page from it
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+ * Combines snapshot capture with page creation for searchable knowledge
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+ */
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+ ingestAndCreatePage(sourcePath, requestId) {
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+ const { snapshot, operation, existing } = this.ingestSource(sourcePath, requestId);
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+ // If page already existed for this source, return it
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+ if (existing) {
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+ // Try to find existing page that cites this snapshot
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+ const pages = this.getAllPages();
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+ const existingPage = pages.find(p => p.frontmatter.sources.some(s => s.sourceId === snapshot.id));
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+ if (existingPage) {
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+ return { page: existingPage, snapshot, operation, existing: true };
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+ }
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+ }
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+ // Create a page from the snapshot
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+ // Title derived from source filename
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+ const path = require("node:path");
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+ const title = path.basename(sourcePath, path.extname(sourcePath))
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+ .replace(/[-_]/g, " ")
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+ .replace(/([a-z])([A-Z])/g, "$1 $2");
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+ // Simple faux synthesis: summary from content
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+ const body = this.synthesizePageBody(snapshot);
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+ const page = this.createPage({
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+ title,
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+ kind: "reference",
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+ body,
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+ sources: [snapshot],
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+ });
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+ return { page, snapshot, operation, existing: false };
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+ }
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+ /**
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+ * Synthesize page body from source snapshot (faux synthesis for now)
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+ */
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+ synthesizePageBody(snapshot) {
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+ // Extract first meaningful lines as summary
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+ const lines = snapshot.content.split("\n").filter(l => {
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+ const trimmed = l.trim();
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+ return trimmed && !trimmed.startsWith("//") && !trimmed.startsWith("#") && trimmed.length > 20;
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+ });
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+ const summary = lines.slice(0, 5).join("\n");
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+ return `# ${snapshot.originalPath}
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+
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+ Source: ${snapshot.originalPath}
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+ Captured: ${snapshot.capturedAt}
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+
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+ ## Summary
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+
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+ ${summary || "(No extractable content)"}
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+
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+ ## Notes
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+
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+ This page was auto-generated from the ingested source. Edit to add analysis and context.
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+ `;
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+ }
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  /**
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  * Get source snapshot
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  */
package/packages/wiki/dist/index.js.map CHANGED
@@ -1 +1 @@
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package/packages/wiki/dist/storage.d.ts CHANGED
@@ -38,6 +38,8 @@ export declare class WikiStorage {
38
38
  private operations;
39
39
  private stagedChanges;
40
40
  private initialized;
41
+ private modifiedIds;
42
+ private deletedIds;
41
43
  constructor(config: WikiConfig);
42
44
  /**
43
45
  * Initialize storage (call before any read/write operations)
@@ -61,7 +63,9 @@ export declare class WikiStorage {
61
63
  */
62
64
  private loadIndex;
63
65
  /**
64
- * Save page index to disk (atomic, merges with existing entries)
66
+ * Save page index to disk (atomic)
67
+ * Only applies changes from this manager instance (tracked via modifiedIds)
68
+ * Respects deletions tracked via deletedIds
65
69
  */
66
70
  private saveIndex;
67
71
  /**
package/packages/wiki/dist/storage.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"storage.d.ts","sourceRoot":"","sources":["../src/storage.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAeH,OAAO,KAAK,EACV,UAAU,EACV,QAAQ,EACR,mBAAmB,EACnB,cAAc,EACd,aAAa,EACb,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,iBAAiB,EACjB,gBAAgB,EAChB,YAAY,EAEb,MAAM,YAAY,CAAC;AAMpB;;GAEG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED;;GAEG;AACH,wBAAgB,GAAG,IAAI,MAAM,CAE5B;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,MAAM,GACd;IAAE,WAAW,EAAE,mBAAmB,GAAG,IAAI,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,CAiBxE;AA8HD;;GAEG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,mBAAmB,GAC/B,MAAM,CAoCR;AAED;;GAEG;AACH,wBAAgB,WAAW,CACzB,WAAW,EAAE,mBAAmB,EAChC,IAAI,EAAE,MAAM,GACX,MAAM,CAER;AAMD;;GAEG;AACH,qBAAa,WAAW;IACtB,OAAO,CAAC,MAAM,CAAa;IAC3B,OAAO,CAAC,KAAK,CAA0C;IACvD,OAAO,CAAC,UAAU,CAAK;IACvB,OAAO,CAAC,UAAU,CAAuB;IACzC,OAAO,CAAC,aAAa,CAAwC;IAC7D,OAAO,CAAC,WAAW,CAAS;IAE5B,OAAO,CAAC,WAAW,CAA0B;IAE7C,OAAO,CAAC,UAAU,CAA0B;IAE5C,YAAY,MAAM,EAAE,UAAU,EAI7B;IAED;;;OAGG;IACH,iBAAiB,IAAI,IAAI,CAMxB;IAED;;OAEG;IACH,aAAa,IAAI,OAAO,CAEvB;IAED;;OAEG;IACH,SAAS,IAAI,UAAU,CAEtB;IAED;;OAEG;IACH,UAAU,IAAI,cAAc,CAqF3B;IAED;;OAEG;IACH,OAAO,CAAC,SAAS;IAiCjB;;;;OAIG;IACH,OAAO,CAAC,SAAS;IAqCjB;;OAEG;IACH,OAAO,CAAC,iBAAiB;IAgBzB;;OAEG;IACH,OAAO,CAAC,cAAc;IAmBtB;;OAEG;IACH,OAAO,CAAC,eAAe;IAMvB;;OAEG;IACH,OAAO,CAAC,UAAU;IAgBlB;;OAEG;IACH,OAAO,CAAC,UAAU;IAalB;;OAEG;IACH,cAAc,CACZ,YAAY,EAAE,MAAM,EACpB,OAAO,EAAE,MAAM,EACf,WAAW,EAAE,MAAM,GAClB,cAAc,CAiBhB;IAED;;OAEG;IACH,WAAW,CAAC,UAAU,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI,CAYrD;IAMD;;OAEG;IACH,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,CA4B7B;IAED;;OAEG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAYxC;IAED;;OAEG;IACH,OAAO,CAAC,cAAc;IAOtB;;OAEG;IACH,OAAO,CAAC,kBAAkB;IAO1B;;OAEG;IACH,OAAO,CAAC,mBAAmB;IAkB3B;;OAEG;IACH,OAAO,CAAC,qBAAqB;IAiB7B;;OAEG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAa/B;IAED;;OAEG;IACH,WAAW,IAAI,QAAQ,EAAE,CAgBxB;IAMD;;OAEG;IACH,WAAW,CAAC,MAAM,EAAE,YAAY,GAAG,IAAI,CAGtC;IAED;;OAEG;IACH,eAAe,CAAC,MAAM,EAAE,MAAM,GAAG,YAAY,GAAG,SAAS,CAExD;IAED;;OAEG;IACH,iBAAiB,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAGtC;IAED;;OAEG;IACH,mBAAmB,IAAI,YAAY,EAAE,CAIpC;IAMD;;OAEG;IACH,YAAY,CACV,IAAI,EAAE,iBAAiB,EACvB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAChC,SAAS,CAAC,EAAE,MAAM,GACjB,aAAa,CAWf;IAED;;OAEG;IACH,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,aAAa,CAAC,QAAQ,CAAC,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAgBrF;IAED;;OAEG;IACH,sBAAsB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAI,CAQ3E;IAED;;OAEG;IACH,mBAAmB,CAAC,KAAK,SAAK,GAAG,aAAa,EAAE,CAE/C;IAMD;;OAEG;IACH,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,iBAAiB,EAAE,KAAK,SAAK,GAAG,gBAAgB,EAAE,CAyCjF;IAED;;OAEG;IACH,QAAQ,IAAI,cAAc,EAAE,CAE3B;CACF;AAMD;;GAEG;AACH,wBAAgB,iBAAiB,CAC/B,aAAa,EAAE,MAAM,EACrB,SAAS,EAAE,MAAM,GAChB,WAAW,CAeb"}
package/packages/wiki/dist/storage.js CHANGED
@@ -130,11 +130,22 @@ function parseValue(value) {
130
130
  if (/^-?\d+(\.\d+)?$/.test(value)) {
131
131
  return parseFloat(value);
132
132
  }
133
- if (value.startsWith("[") && value.endsWith("]")) {
134
- const content = value.slice(1, -1);
133
+ // Handle JSON-serialized values (objects and arrays)
134
+ const trimmed = value.trim();
135
+ if ((trimmed.startsWith("{") && trimmed.endsWith("}")) ||
136
+ (trimmed.startsWith("[") && trimmed.endsWith("]"))) {
137
+ try {
138
+ return JSON.parse(trimmed);
139
+ }
140
+ catch {
141
+ // Fall through to string parsing
142
+ }
143
+ }
144
+ if (trimmed.startsWith("[") && trimmed.endsWith("]")) {
145
+ const content = trimmed.slice(1, -1);
135
146
  return content ? content.split(",").map((s) => s.trim().replace(/^["']|["']$/g, "")) : [];
136
147
  }
137
- return value.replace(/^["']|["']$/g, "");
148
+ return trimmed.replace(/^["']|["']$/g, "");
138
149
  }
139
150
  /**
140
151
  * Serialize frontmatter to YAML string
@@ -144,8 +155,8 @@ export function serializeFrontmatter(frontmatter) {
144
155
  for (const [key, value] of Object.entries(frontmatter)) {
145
156
  if (value === undefined || value === null)
146
157
  continue;
147
- // Special handling for sources array - use JSON for reliability
148
- if (key === "sources" && Array.isArray(value)) {
158
+ // Special handling for sources and verification - use JSON for reliability
159
+ if ((key === "sources" || key === "verification") && (Array.isArray(value) || typeof value === "object")) {
149
160
  lines.push(`${key}: ${JSON.stringify(value)}`);
150
161
  continue;
151
162
  }
@@ -196,6 +207,10 @@ export class WikiStorage {
196
207
  operations = [];
197
208
  stagedChanges = new Map();
198
209
  initialized = false;
210
+ // Track explicitly modified entries to prevent stale data overwrites
211
+ modifiedIds = new Set();
212
+ // Track explicitly deleted IDs to prevent resurrecting deletions
213
+ deletedIds = new Set();
199
214
  constructor(config) {
200
215
  this.config = config;
201
216
  // Don't create directories until explicitly initialized
@@ -342,25 +357,36 @@ verification:
342
357
  }
343
358
  }
344
359
  /**
345
- * Save page index to disk (atomic, merges with existing entries)
360
+ * Save page index to disk (atomic)
361
+ * Only applies changes from this manager instance (tracked via modifiedIds)
362
+ * Respects deletions tracked via deletedIds
346
363
  */
347
364
  saveIndex() {
348
- // Reload from disk to handle concurrent writes from other processes
365
+ // Load current disk state
349
366
  const diskEntries = this.loadIndexFromDisk();
350
- // Start with disk state, then apply current in-memory state
351
- // This ensures deletions are persisted (not in this.index) and additions are included
352
367
  const merged = new Map();
353
- // Add all disk entries first
368
+ // Start with disk entries, filtering out deleted ones
354
369
  for (const [id, entry] of diskEntries) {
355
- // Only keep if still exists on disk
370
+ // Skip if explicitly deleted by this manager
371
+ if (this.deletedIds.has(id)) {
372
+ continue;
373
+ }
374
+ // Skip if page file no longer exists
356
375
  const pageFile = join(this.config.knowledgeDir, `${id}.md`);
357
- if (existsSync(pageFile)) {
376
+ if (!existsSync(pageFile)) {
377
+ continue;
378
+ }
379
+ // Keep disk entry unless this manager modified it
380
+ if (!this.modifiedIds.has(id)) {
358
381
  merged.set(id, entry);
359
382
  }
360
383
  }
361
- // Apply in-memory changes (adds/updates)
362
- for (const [id, entry] of this.index) {
363
- merged.set(id, entry);
384
+ // Apply only this manager's modifications
385
+ for (const id of this.modifiedIds) {
386
+ const entry = this.index.get(id);
387
+ if (entry) {
388
+ merged.set(id, entry);
389
+ }
364
390
  }
365
391
  const entries = Array.from(merged.values());
366
392
  const content = JSON.stringify(entries, null, 2);
@@ -498,7 +524,9 @@ verification:
498
524
  const content = combinePage(page.frontmatter, page.body);
499
525
  const pageFile = join(this.config.knowledgeDir, `${page.frontmatter.id}.md`);
500
526
  this.ensureWithinDirectory(pageFile, this.config.knowledgeDir);
527
+ // Validate temp path to prevent symlink bypass
501
528
  const tmpFile = pageFile + ".tmp";
529
+ this.ensureWithinDirectory(tmpFile, this.config.knowledgeDir);
502
530
  writeFileSync(tmpFile, content, "utf8");
503
531
  renameSync(tmpFile, pageFile);
504
532
  // Update index
@@ -513,6 +541,10 @@ verification:
513
541
  codeVersion: page.frontmatter.codeVersion,
514
542
  };
515
543
  this.index.set(entry.id, entry);
544
+ // Track this entry as modified so saveIndex applies it
545
+ this.modifiedIds.add(entry.id);
546
+ // Clear from deleted set if it was previously deleted
547
+ this.deletedIds.delete(entry.id);
516
548
  this.saveIndex();
517
549
  }
518
550
  /**
@@ -598,6 +630,9 @@ verification:
598
630
  unlinkSync(pageFile);
599
631
  }
600
632
  this.index.delete(pageId);
633
+ // Track this ID as deleted so saveIndex excludes it
634
+ this.deletedIds.add(pageId);
635
+ this.modifiedIds.delete(pageId);
601
636
  this.saveIndex();
602
637
  this.stagedChanges.delete(pageId);
603
638
  this.saveStaged();
package/packages/wiki/dist/storage.js.map CHANGED
@@ -1 +1 @@
1
- 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package/packages/wiki/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@pi-harness/wiki",
3
- "version": "1.1.330",
3
+ "version": "1.1.331",
4
4
  "description": "LLM Wiki integration for pi-harness-runtime",
5
5
  "type": "module",
6
6
  "main": "./dist/index.js",
package/packages/wiki/src/index.ts CHANGED
@@ -169,6 +169,74 @@ export class WikiManager {
169
169
  }
170
170
  }
171
171
 
172
+ /**
173
+ * Ingest a source and create a wiki page from it
174
+ * Combines snapshot capture with page creation for searchable knowledge
175
+ */
176
+ ingestAndCreatePage(
177
+ sourcePath: string,
178
+ requestId?: string
179
+ ): { page: WikiPage; snapshot: SourceSnapshot; operation: WikiOperation; existing: boolean } {
180
+ const { snapshot, operation, existing } = this.ingestSource(sourcePath, requestId);
181
+
182
+ // If page already existed for this source, return it
183
+ if (existing) {
184
+ // Try to find existing page that cites this snapshot
185
+ const pages = this.getAllPages();
186
+ const existingPage = pages.find(p =>
187
+ p.frontmatter.sources.some(s => s.sourceId === snapshot.id)
188
+ );
189
+ if (existingPage) {
190
+ return { page: existingPage, snapshot, operation, existing: true };
191
+ }
192
+ }
193
+
194
+ // Create a page from the snapshot
195
+ // Title derived from source filename
196
+ const path = require("node:path");
197
+ const title = path.basename(sourcePath, path.extname(sourcePath))
198
+ .replace(/[-_]/g, " ")
199
+ .replace(/([a-z])([A-Z])/g, "$1 $2");
200
+
201
+ // Simple faux synthesis: summary from content
202
+ const body = this.synthesizePageBody(snapshot);
203
+
204
+ const page = this.createPage({
205
+ title,
206
+ kind: "reference",
207
+ body,
208
+ sources: [snapshot],
209
+ });
210
+
211
+ return { page, snapshot, operation, existing: false };
212
+ }
213
+
214
+ /**
215
+ * Synthesize page body from source snapshot (faux synthesis for now)
216
+ */
217
+ private synthesizePageBody(snapshot: SourceSnapshot): string {
218
+ // Extract first meaningful lines as summary
219
+ const lines = snapshot.content.split("\n").filter(l => {
220
+ const trimmed = l.trim();
221
+ return trimmed && !trimmed.startsWith("//") && !trimmed.startsWith("#") && trimmed.length > 20;
222
+ });
223
+ const summary = lines.slice(0, 5).join("\n");
224
+
225
+ return `# ${snapshot.originalPath}
226
+
227
+ Source: ${snapshot.originalPath}
228
+ Captured: ${snapshot.capturedAt}
229
+
230
+ ## Summary
231
+
232
+ ${summary || "(No extractable content)"}
233
+
234
+ ## Notes
235
+
236
+ This page was auto-generated from the ingested source. Edit to add analysis and context.
237
+ `;
238
+ }
239
+
172
240
  /**
173
241
  * Get source snapshot
174
242
  */
package/packages/wiki/src/storage.ts CHANGED
@@ -181,11 +181,21 @@ function parseValue(value: string): YamlValue {
181
181
  if (/^-?\d+(\.\d+)?$/.test(value)) {
182
182
  return parseFloat(value);
183
183
  }
184
- if (value.startsWith("[") && value.endsWith("]")) {
185
- const content = value.slice(1, -1);
184
+ // Handle JSON-serialized values (objects and arrays)
185
+ const trimmed = value.trim();
186
+ if ((trimmed.startsWith("{") && trimmed.endsWith("}")) ||
187
+ (trimmed.startsWith("[") && trimmed.endsWith("]"))) {
188
+ try {
189
+ return JSON.parse(trimmed);
190
+ } catch {
191
+ // Fall through to string parsing
192
+ }
193
+ }
194
+ if (trimmed.startsWith("[") && trimmed.endsWith("]")) {
195
+ const content = trimmed.slice(1, -1);
186
196
  return content ? content.split(",").map((s) => s.trim().replace(/^["']|["']$/g, "")) : [];
187
197
  }
188
- return value.replace(/^["']|["']$/g, "");
198
+ return trimmed.replace(/^["']|["']$/g, "");
189
199
  }
190
200
 
191
201
  /**
@@ -200,8 +210,8 @@ export function serializeFrontmatter(
200
210
  if (value === undefined || value === null) continue;
201
211
 
202
212
 
203
- // Special handling for sources array - use JSON for reliability
204
- if (key === "sources" && Array.isArray(value)) {
213
+ // Special handling for sources and verification - use JSON for reliability
214
+ if ((key === "sources" || key === "verification") && (Array.isArray(value) || typeof value === "object")) {
205
215
  lines.push(`${key}: ${JSON.stringify(value)}`);
206
216
  continue;
207
217
  }
@@ -255,6 +265,10 @@ export class WikiStorage {
255
265
  private operations: WikiOperation[] = [];
256
266
  private stagedChanges: Map<string, StagedChange> = new Map();
257
267
  private initialized = false;
268
+ // Track explicitly modified entries to prevent stale data overwrites
269
+ private modifiedIds: Set<string> = new Set();
270
+ // Track explicitly deleted IDs to prevent resurrecting deletions
271
+ private deletedIds: Set<string> = new Set();
258
272
 
259
273
  constructor(config: WikiConfig) {
260
274
  this.config = config;
@@ -415,28 +429,38 @@ verification:
415
429
  }
416
430
 
417
431
  /**
418
- * Save page index to disk (atomic, merges with existing entries)
432
+ * Save page index to disk (atomic)
433
+ * Only applies changes from this manager instance (tracked via modifiedIds)
434
+ * Respects deletions tracked via deletedIds
419
435
  */
420
436
  private saveIndex(): void {
421
- // Reload from disk to handle concurrent writes from other processes
437
+ // Load current disk state
422
438
  const diskEntries = this.loadIndexFromDisk();
423
-
424
- // Start with disk state, then apply current in-memory state
425
- // This ensures deletions are persisted (not in this.index) and additions are included
426
439
  const merged = new Map<string, PageIndexEntry>();
427
440
 
428
- // Add all disk entries first
441
+ // Start with disk entries, filtering out deleted ones
429
442
  for (const [id, entry] of diskEntries) {
430
- // Only keep if still exists on disk
443
+ // Skip if explicitly deleted by this manager
444
+ if (this.deletedIds.has(id)) {
445
+ continue;
446
+ }
447
+ // Skip if page file no longer exists
431
448
  const pageFile = join(this.config.knowledgeDir, `${id}.md`);
432
- if (existsSync(pageFile)) {
449
+ if (!existsSync(pageFile)) {
450
+ continue;
451
+ }
452
+ // Keep disk entry unless this manager modified it
453
+ if (!this.modifiedIds.has(id)) {
433
454
  merged.set(id, entry);
434
455
  }
435
456
  }
436
457
 
437
- // Apply in-memory changes (adds/updates)
438
- for (const [id, entry] of this.index) {
439
- merged.set(id, entry);
458
+ // Apply only this manager's modifications
459
+ for (const id of this.modifiedIds) {
460
+ const entry = this.index.get(id);
461
+ if (entry) {
462
+ merged.set(id, entry);
463
+ }
440
464
  }
441
465
 
442
466
  const entries = Array.from(merged.values());
@@ -586,7 +610,9 @@ verification:
586
610
  const content = combinePage(page.frontmatter, page.body);
587
611
  const pageFile = join(this.config.knowledgeDir, `${page.frontmatter.id}.md`);
588
612
  this.ensureWithinDirectory(pageFile, this.config.knowledgeDir);
613
+ // Validate temp path to prevent symlink bypass
589
614
  const tmpFile = pageFile + ".tmp";
615
+ this.ensureWithinDirectory(tmpFile, this.config.knowledgeDir);
590
616
  writeFileSync(tmpFile, content, "utf8");
591
617
  renameSync(tmpFile, pageFile);
592
618
 
@@ -602,6 +628,10 @@ verification:
602
628
  codeVersion: page.frontmatter.codeVersion,
603
629
  };
604
630
  this.index.set(entry.id, entry);
631
+ // Track this entry as modified so saveIndex applies it
632
+ this.modifiedIds.add(entry.id);
633
+ // Clear from deleted set if it was previously deleted
634
+ this.deletedIds.delete(entry.id);
605
635
  this.saveIndex();
606
636
  }
607
637
 
@@ -693,6 +723,9 @@ verification:
693
723
  unlinkSync(pageFile);
694
724
  }
695
725
  this.index.delete(pageId);
726
+ // Track this ID as deleted so saveIndex excludes it
727
+ this.deletedIds.add(pageId);
728
+ this.modifiedIds.delete(pageId);
696
729
  this.saveIndex();
697
730
  this.stagedChanges.delete(pageId);
698
731
  this.saveStaged();
package/packages/workflow-events/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@pi/workflow-events",
3
- "version": "1.1.330",
3
+ "version": "1.1.331",
4
4
  "type": "module",
5
5
  "main": "src/index.ts",
6
6
  "exports": {
package/packages/workspace-scanner/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@pi/workspace-scanner",
3
- "version": "1.1.330",
3
+ "version": "1.1.331",
4
4
  "type": "module",
5
5
  "main": "src/index.ts",
6
6
  "exports": {
package/packages/worktree/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@pi-harness/worktree",
3
- "version": "1.1.330",
3
+ "version": "1.1.331",
4
4
  "description": "pi-harness-runtime — worktree",
5
5
  "type": "module",
6
6
  "main": "./dist/index.js",
package/packages/write-review/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@moocoding/write-review",
3
- "version": "1.1.330",
3
+ "version": "1.1.331",
4
4
  "description": "Two-agent write-review loop with blackboard coordination",
5
5
  "type": "module",
6
6
  "main": "src/index.ts",