pi-harness-runtime 1.1.326 → 1.1.328

package/packages/wiki/dist/storage.d.ts

@@ -34,10 +34,24 @@ export declare function combinePage(frontmatter: WikiPageFrontmatter, body: stri
 export declare class WikiStorage {
     private config;
     private index;
+    private indexMtime;
     private operations;
     private stagedChanges;
-    private dirty;
+    private initialized;
     constructor(config: WikiConfig);
+    /**
+     * Initialize storage (call before any read/write operations)
+     * This is called automatically by WikiManager when feature is enabled
+     */
+    /**
+     * Prepare storage for use (load indexes and operations)
+     * Called after directories are ensured by initialize()
+     */
+    private prepareStorage;
+    /**
+     * Check if storage is initialized
+     */
+    isInitialized(): boolean;
     /**
      * Get wiki configuration
      */
@@ -47,17 +61,17 @@ export declare class WikiStorage {
      */
     initialize(): WikiInitResult;
     /**
-     * Ensure directory structure exists
-     */
-    private ensureStructure;
-    /**
-     * Load page index from disk
+     * Load page index from disk (if changed since last load)
      */
     private loadIndex;
     /**
-     * Save page index to disk (atomic)
+     * Save page index to disk (atomic, merges with existing entries)
      */
     private saveIndex;
+    /**
+     * Load index from disk only (no cache)
+     */
+    private loadIndexFromDisk;
     /**
      * Load operations from log
      */
@@ -90,6 +104,18 @@ export declare class WikiStorage {
      * Load a wiki page
      */
     loadPage(pageId: string): WikiPage | null;
+    /**
+     * Validate page ID to prevent path traversal attacks
+     */
+    private validatePageId;
+    /**
+     * Validate snapshot ID to prevent path traversal attacks
+     */
+    private validateSnapshotId;
+    /**
+     * Ensure a path is within the expected directory (defense in depth)
+     */
+    private ensureWithinDirectory;
     /**
      * Delete a wiki page
      */
@@ -122,6 +148,10 @@ export declare class WikiStorage {
      * Update operation status
      */
     completeOperation(opId: string, status: WikiOperation["status"], error?: string): void;
+    /**
+     * Update operation details (before completion)
+     */
+    updateOperationDetails(opId: string, details: Record<string, unknown>): void;
     /**
      * Get recent operations
      */

package/packages/wiki/dist/storage.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"storage.d.ts","sourceRoot":"","sources":["../src/storage.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAcH,OAAO,KAAK,EACV,UAAU,EACV,QAAQ,EACR,mBAAmB,EACnB,cAAc,EACd,aAAa,EACb,cAAc,EACd,cAAc,EACd,iBAAiB,EACjB,iBAAiB,EACjB,gBAAgB,EAEhB,YAAY,EAEb,MAAM,YAAY,CAAC;AAMpB;;GAEG;AACH,wBAAgB,WAAW,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAEnD;AAED;;GAEG;AACH,wBAAgB,GAAG,IAAI,MAAM,CAE5B;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAC9B,OAAO,EAAE,MAAM,GACd;IAAE,WAAW,EAAE,mBAAmB,GAAG,IAAI,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,CAiBxE;AAoHD;;GAEG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,mBAAmB,GAC/B,MAAM,CA0CR;AAED;;GAEG;AACH,wBAAgB,WAAW,CACzB,WAAW,EAAE,mBAAmB,EAChC,IAAI,EAAE,MAAM,GACX,MAAM,CAER;AAMD;;GAEG;AACH,qBAAa,WAAW;IACtB,OAAO,CAAC,MAAM,CAAa;IAC3B,OAAO,CAAC,KAAK,CAA0C;IACvD,OAAO,CAAC,UAAU,CAAK;IACvB,OAAO,CAAC,UAAU,CAAuB;IACzC,OAAO,CAAC,aAAa,CAAwC;IAC7D,OAAO,CAAC,WAAW,CAAS;IAE5B,YAAY,MAAM,EAAE,UAAU,EAI7B;IAED;;;OAGG;IACH;;;OAGG;IACH,OAAO,CAAC,cAAc;IAQtB;;OAEG;IACH,aAAa,IAAI,OAAO,CAEvB;IAED;;OAEG;IACH,SAAS,IAAI,UAAU,CAEtB;IAED;;OAEG;IACH,UAAU,IAAI,cAAc,CAkF3B;IAED;;OAEG;IACH,OAAO,CAAC,SAAS;IAiCjB;;OAEG;IACH,OAAO,CAAC,SAAS;IAiBjB;;OAEG;IACH,OAAO,CAAC,iBAAiB;IAgBzB;;OAEG;IACH,OAAO,CAAC,cAAc;IAmBtB;;OAEG;IACH,OAAO,CAAC,eAAe;IAMvB;;OAEG;IACH,OAAO,CAAC,UAAU;IAgBlB;;OAEG;IACH,OAAO,CAAC,UAAU;IAalB;;OAEG;IACH,cAAc,CACZ,YAAY,EAAE,MAAM,EACpB,OAAO,EAAE,MAAM,EACf,WAAW,EAAE,MAAM,GAClB,cAAc,CAiBhB;IAED;;OAEG;IACH,WAAW,CAAC,UAAU,EAAE,MAAM,GAAG,cAAc,GAAG,IAAI,CAYrD;IAMD;;OAEG;IACH,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,CAsB7B;IAED;;OAEG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAYxC;IAED;;OAEG;IACH,OAAO,CAAC,cAAc;IAOtB;;OAEG;IACH,OAAO,CAAC,kBAAkB;IAO1B;;OAEG;IACH,OAAO,CAAC,qBAAqB;IAQ7B;;OAEG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAU/B;IAED;;OAEG;IACH,WAAW,IAAI,QAAQ,EAAE,CAgBxB;IAMD;;OAEG;IACH,WAAW,CAAC,MAAM,EAAE,YAAY,GAAG,IAAI,CAGtC;IAED;;OAEG;IACH,eAAe,CAAC,MAAM,EAAE,MAAM,GAAG,YAAY,GAAG,SAAS,CAExD;IAED;;OAEG;IACH,iBAAiB,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAGtC;IAED;;OAEG;IACH,mBAAmB,IAAI,YAAY,EAAE,CAIpC;IAMD;;OAEG;IACH,YAAY,CACV,IAAI,EAAE,iBAAiB,EACvB,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAChC,SAAS,CAAC,EAAE,MAAM,GACjB,aAAa,CAWf;IAED;;OAEG;IACH,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,aAAa,CAAC,QAAQ,CAAC,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAgBrF;IAED;;OAEG;IACH,sBAAsB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAI,CAQ3E;IAED;;OAEG;IACH,mBAAmB,CAAC,KAAK,SAAK,GAAG,aAAa,EAAE,CAE/C;IAMD;;OAEG;IACH,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,iBAAiB,EAAE,KAAK,SAAK,GAAG,gBAAgB,EAAE,CAyCjF;IAED;;OAEG;IACH,QAAQ,IAAI,cAAc,EAAE,CAE3B;CACF;AAMD;;GAEG;AACH,wBAAgB,iBAAiB,CAC/B,aAAa,EAAE,MAAM,EACrB,SAAS,EAAE,MAAM,GAChB,WAAW,CAeb"}

package/packages/wiki/dist/storage.js

@@ -3,8 +3,8 @@
  *
  * Handles atomic writes, transactions, and consistency.
  */
-import { existsSync, mkdirSync, readFileSync, writeFileSync, unlinkSync, renameSync, readdirSync, } from "node:fs";
-import { join } from "node:path";
+import { existsSync, mkdirSync, readFileSync, writeFileSync, unlinkSync, renameSync, readdirSync, statSync, } from "node:fs";
+import { join, resolve } from "node:path";
 import { createHash, randomUUID } from "node:crypto";
 // ============================================================================
 // Utilities
@@ -32,6 +32,8 @@ export function parseFrontmatter(content) {
     const [, yamlStr, body] = match;
     const frontmatter = parseYaml(yamlStr);
     return {
+        // SAFETY: parseYaml returns Record<string, unknown>, cast through unknown to satisfy TS
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
         frontmatter: frontmatter,
         body: body.trim(),
         raw: yamlStr,
@@ -39,59 +41,101 @@ export function parseFrontmatter(content) {
 }
 /**
  * Simple YAML parser for frontmatter
- * Handles: strings, booleans, numbers, arrays, nested objects
+ * Handles: strings, booleans, numbers, arrays, nested objects, YAML list items
  */
 function parseYaml(yamlStr) {
     const result = {};
     const lines = yamlStr.split("\n");
-    let currentKey = "";
-    let currentIndent = 0;
     const stack = [];
-    for (const line of lines) {
+    for (let i = 0; i < lines.length; i++) {
+        const line = lines[i];
         const trimmed = line.trim();
         if (!trimmed || trimmed.startsWith("#"))
             continue;
         const indent = line.search(/\S/);
+        // Handle YAML list items (lines starting with '-')
+        if (trimmed.startsWith("-")) {
+            const itemContent = trimmed.slice(1).trim();
+            const colonIdx = itemContent.indexOf(":");
+            if (colonIdx !== -1) {
+                // This is a list item with key-value pairs on same line or next lines
+                const key = itemContent.slice(0, colonIdx).trim();
+                const value = itemContent.slice(colonIdx + 1).trim();
+                // Pop stack while indent decreases
+                while (stack.length > 0 && indent < stack[stack.length - 1].indent) {
+                    stack.pop();
+                }
+                // Find or create the array
+                const parent = stack.length > 0 ? stack[stack.length - 1].obj : result;
+                const arrayKey = parent ? Object.keys(parent).slice(-1)[0] : undefined;
+                let array;
+                if (arrayKey && Array.isArray(parent[arrayKey])) {
+                    array = parent[arrayKey];
+                }
+                else {
+                    // Start a new array
+                    const newArray = [];
+                    if (parent) {
+                        parent[arrayKey || key] = newArray;
+                    }
+                    else {
+                        result[key] = newArray;
+                    }
+                    array = newArray;
+                }
+                // Create new object for this list item
+                const item = {};
+                array.push(item);
+                // Parse the key-value on this line
+                const parsedValue = parseValue(value);
+                if (parsedValue !== undefined) {
+                    item[key] = parsedValue;
+                }
+                // Push this item to stack for nested properties
+                stack.push({ obj: item, indent });
+            }
+            continue;
+        }
+        // Regular key-value line
         const colonIdx = trimmed.indexOf(":");
         if (colonIdx === -1)
             continue;
         const key = trimmed.slice(0, colonIdx).trim();
-        let value = trimmed.slice(colonIdx + 1).trim();
+        const rawValue = trimmed.slice(colonIdx + 1).trim();
         // Pop stack while indent decreases
         while (stack.length > 0 && indent <= stack[stack.length - 1].indent) {
             stack.pop();
         }
         const parent = stack.length > 0 ? stack[stack.length - 1].obj : result;
-        // Parse value
-        if (value === "" || value === "null" || value === "~") {
-            value = null;
-        }
-        else if (value === "true") {
-            value = true;
-        }
-        else if (value === "false") {
-            value = false;
-        }
-        else if (/^-?\d+(\.\d+)?$/.test(value)) {
-            value = parseFloat(value);
-        }
-        else if (value.startsWith("[") && value.endsWith("]")) {
-            // Array
-            const arrContent = value.slice(1, -1);
-            value = arrContent
-                ? arrContent.split(",").map((s) => s.trim().replace(/^["']|["']$/g, ""))
-                : [];
-        }
-        else {
-            // String - remove quotes
-            value = value.replace(/^["']|["']$/g, "");
+        // Check if value is empty (nested content follows)
+        if (rawValue === "" || rawValue === "~" || rawValue === "null") {
+            // Nested content follows - create placeholder
+            const nested = {};
+            parent[key] = nested;
+            stack.push({ obj: nested, indent });
+            continue;
         }
-        parent[key] = value;
-        currentKey = key;
-        currentIndent = indent;
+        parent[key] = parseValue(rawValue);
     }
     return result;
 }
+function parseValue(value) {
+    if (value === "" || value === "null" || value === "~") {
+        return null;
+    }
+    if (value === "true")
+        return true;
+    if (value === "false")
+        return false;
+    if (/^-?\d+(\.\d+)?$/.test(value)) {
+        return parseFloat(value);
+    }
+    if (value.startsWith("[") && value.endsWith("]")) {
+        const content = value.slice(1, -1);
+        return content ? content.split(",").map((s) => s.trim().replace(/^["']|["']$/g, "")) : [];
+    }
+    return value.replace(/^["']|["']$/g, "");
+}
 /**
  * Serialize frontmatter to YAML string
  */
@@ -104,11 +148,15 @@ export function serializeFrontmatter(frontmatter) {
             if (value.length === 0) {
                 lines.push(`${key}: []`);
             }
-            else if (value.every((v) => typeof v === "object")) {
-                // Array of objects
+            else if (value.every((v) => typeof v === "object" && v !== null)) {
+                // Array of objects - serialize as proper YAML
                 lines.push(`${key}:`);
                 for (const item of value) {
-                    lines.push(`  - ${JSON.stringify(item)}`);
+                    lines.push(`  - sourceId: ${item.sourceId}`);
+                    lines.push(`    path: ${item.path}`);
+                    lines.push(`    contentHash: ${item.contentHash}`);
+                    lines.push(`    capturedAt: ${item.capturedAt}`);
+                    lines.push(`    redacted: ${item.redacted}`);
                 }
             }
             else {
@@ -153,15 +201,36 @@ export function combinePage(frontmatter, body) {
 export class WikiStorage {
     config;
     index = new Map();
+    indexMtime = 0; // Track when index was last loaded
     operations = [];
     stagedChanges = new Map();
-    dirty = false;
+    initialized = false;
     constructor(config) {
         this.config = config;
-        this.ensureStructure();
+        // Don't create directories until explicitly initialized
+        // This prevents writes when the feature is disabled
+    }
+    /**
+     * Initialize storage (call before any read/write operations)
+     * This is called automatically by WikiManager when feature is enabled
+     */
+    /**
+     * Prepare storage for use (load indexes and operations)
+     * Called after directories are ensured by initialize()
+     */
+    prepareStorage() {
+        if (this.initialized)
+            return;
         this.loadIndex();
         this.loadOperations();
         this.loadStaged();
+        this.initialized = true;
+    }
+    /**
+     * Check if storage is initialized
+     */
+    isInitialized() {
+        return this.initialized;
     }
     /**
      * Get wiki configuration
@@ -249,41 +318,75 @@ verification:
         };
     }
     /**
-     * Ensure directory structure exists
+     * Load page index from disk (if changed since last load)
      */
-    ensureStructure() {
-        if (!existsSync(this.config.wikiRoot)) {
-            mkdirSync(this.config.wikiRoot, { recursive: true });
+    loadIndex(force = false) {
+        if (!force) {
+            try {
+                const stat = statSync(this.config.indexFile);
+                // Only reload if file was modified since last load
+                if (stat.mtimeMs <= this.indexMtime) {
+                    return;
+                }
+            }
+            catch {
+                // File doesn't exist or can't be stat'd
+            }
         }
-    }
-    /**
-     * Load page index from disk
-     */
-    loadIndex() {
         this.index.clear();
-        if (!existsSync(this.config.indexFile))
+        if (!existsSync(this.config.indexFile)) {
+            this.indexMtime = 0;
             return;
+        }
         try {
             const content = readFileSync(this.config.indexFile, "utf8");
             const entries = JSON.parse(content);
             for (const entry of entries) {
                 this.index.set(entry.id, entry);
             }
+            const stat = statSync(this.config.indexFile);
+            this.indexMtime = stat.mtimeMs;
         }
         catch {
             // Invalid index, rebuild
+            this.indexMtime = 0;
         }
     }
     /**
-     * Save page index to disk (atomic)
+     * Save page index to disk (atomic, merges with existing entries)
      */
     saveIndex() {
-        const entries = Array.from(this.index.values());
+        // Reload from disk to merge (handles concurrent writes)
+        const diskEntries = this.loadIndexFromDisk();
+        const merged = new Map(diskEntries);
+        // Apply in-memory changes
+        for (const [id, entry] of this.index) {
+            merged.set(id, entry);
+        }
+        const entries = Array.from(merged.values());
         const content = JSON.stringify(entries, null, 2);
         const tmpFile = this.config.indexFile + ".tmp";
         writeFileSync(tmpFile, content, "utf8");
         renameSync(tmpFile, this.config.indexFile);
-        this.dirty = false;
+    }
+    /**
+     * Load index from disk only (no cache)
+     */
+    loadIndexFromDisk() {
+        const result = new Map();
+        if (!existsSync(this.config.indexFile))
+            return result;
+        try {
+            const content = readFileSync(this.config.indexFile, "utf8");
+            const entries = JSON.parse(content);
+            for (const entry of entries) {
+                result.set(entry.id, entry);
+            }
+        }
+        catch {
+            // Invalid index, return empty
+        }
+        return result;
     }
     /**
      * Load operations from log
@@ -372,7 +475,9 @@ verification:
      * Get source snapshot by ID
      */
     getSnapshot(snapshotId) {
+        this.validateSnapshotId(snapshotId);
         const snapFile = join(this.config.rawDir, `${snapshotId}.json`);
+        this.ensureWithinDirectory(snapFile, this.config.rawDir);
         if (!existsSync(snapFile))
             return null;
         try {
@@ -390,8 +495,10 @@ verification:
      * Save a wiki page
      */
     savePage(page) {
+        this.validatePageId(page.frontmatter.id);
         const content = combinePage(page.frontmatter, page.body);
         const pageFile = join(this.config.knowledgeDir, `${page.frontmatter.id}.md`);
+        this.ensureWithinDirectory(pageFile, this.config.knowledgeDir);
         const tmpFile = pageFile + ".tmp";
         writeFileSync(tmpFile, content, "utf8");
         renameSync(tmpFile, pageFile);
@@ -408,13 +515,14 @@ verification:
         };
         this.index.set(entry.id, entry);
         this.saveIndex();
-        this.dirty = true;
     }
     /**
      * Load a wiki page
      */
     loadPage(pageId) {
+        this.validatePageId(pageId);
         const pageFile = join(this.config.knowledgeDir, `${pageId}.md`);
+        this.ensureWithinDirectory(pageFile, this.config.knowledgeDir);
         if (!existsSync(pageFile))
             return null;
         const content = readFileSync(pageFile, "utf8");
@@ -423,10 +531,39 @@ verification:
             return null;
         return { frontmatter, body, rawFrontmatter: raw };
     }
+    /**
+     * Validate page ID to prevent path traversal attacks
+     */
+    validatePageId(pageId) {
+        // Reject paths with directory separators or parent references
+        if (pageId.includes("/") || pageId.includes("\\") || pageId.includes("..")) {
+            throw new Error(`Invalid page ID: ${pageId}`);
+        }
+    }
+    /**
+     * Validate snapshot ID to prevent path traversal attacks
+     */
+    validateSnapshotId(snapshotId) {
+        // Reject paths with directory separators or parent references
+        if (snapshotId.includes("/") || snapshotId.includes("\\") || snapshotId.includes("..")) {
+            throw new Error(`Invalid snapshot ID: ${snapshotId}`);
+        }
+    }
+    /**
+     * Ensure a path is within the expected directory (defense in depth)
+     */
+    ensureWithinDirectory(filePath, expectedDir) {
+        const resolved = resolve(filePath);
+        const expected = resolve(expectedDir);
+        if (!resolved.startsWith(expected + "/") && resolved !== expected) {
+            throw new Error(`Path ${filePath} is outside expected directory ${expectedDir}`);
+        }
+    }
     /**
      * Delete a wiki page
      */
     deletePage(pageId) {
+        this.validatePageId(pageId);
         const pageFile = join(this.config.knowledgeDir, `${pageId}.md`);
         if (existsSync(pageFile)) {
             unlinkSync(pageFile);
@@ -440,6 +577,8 @@ verification:
      * Get all pages
      */
     getAllPages() {
+        // Reload index to get latest changes from other processes
+        this.loadIndex();
         const pages = [];
         if (!existsSync(this.config.knowledgeDir))
             return pages;
@@ -481,6 +620,8 @@ verification:
      * Get all staged changes
      */
     getAllStagedChanges() {
+        // Reload staged changes to get latest from other processes
+        this.loadStaged();
         return Array.from(this.stagedChanges.values());
     }
     // ========================================================================
@@ -520,6 +661,18 @@ verification:
         writeFileSync(tmpFile, content, "utf8");
         renameSync(tmpFile, this.config.logFile);
     }
+    /**
+     * Update operation details (before completion)
+     */
+    updateOperationDetails(opId, details) {
+        const opIndex = this.operations.findIndex((o) => o.id === opId);
+        if (opIndex === -1)
+            return;
+        this.operations[opIndex] = {
+            ...this.operations[opIndex],
+            details: { ...this.operations[opIndex].details, ...details },
+        };
+    }
     /**
      * Get recent operations
      */
@@ -535,7 +688,7 @@ verification:
     search(query, filters, limit = 10) {
         const queryLower = query.toLowerCase();
         const results = [];
-        for (const [id, entry] of this.index) {
+        for (const [_id, entry] of this.index) {
             // Apply filters
             if (filters?.kinds?.length && !filters.kinds.includes(entry.kind))
                 continue;

package/packages/wiki/dist/storage.js.map

@@ -1 +1 @@
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package/packages/wiki/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@pi-harness/wiki",
-  "version": "1.1.326",
+  "version": "1.1.328",
   "description": "LLM Wiki integration for pi-harness-runtime",
   "type": "module",
   "main": "./dist/index.js",